Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu02g2107 ATGGGGAAAGACGTTGAAGTTGCAGAGCAAGGCGAATTCCAAAGCAAAGACTACCAAGACCCACCTCCCGCTCCTCTCATCGACCCTGAAGAACTAACCAAATGGTCTCTTTACAGAGCCGCCATCGCCGAGTTCATCGCCACTCTCCTCTTCCTCTATGTCACCGTTTTGACCGTCATCGGTTACTCCCACCAAAGCGACCCTTCCGTTTCCACCGACCCCTGTAACGGCGTTGGCATCCTCGGTATCGCTTGGGCCTTCGGCGGTATGATTTTCATCCTTGTTTACTGCACCGCTGGTATCTCCGGTGGCCACATTAACCCCGCCGTCACTTTCGGCCTCTTCTTAGCTCGCAAAGTCTCTCTGGTTCGTGCTCTGTTGTACATCATTGCTCAGTGCGCCGGTGCTATTTGCGGCTGTGGCTTGGTTAGAGCCTTCCAATCTGCTTATTATGTTAGATACAACGGCGGTGCTAATATGCTCAGTAATGGGTATAACAAAGGAACTGGATTAGGCGCTGAAATCATCGGTACTTTTGTTCTTGTTTACACTGTTTTCTCTGCTACTGATCCCAAGAGAAACGCCAGAGATTCTCATGTTCCTGTTTTGGCTCCACTCCCAATTGGGTTTGCTGTGTTCATGGTTCATTTGGCTACAATCCCCATCACTGGAACTGGAATTAACCCTGCAAGAAGTTTTGGAGCTGCTGTCATCTTCAACAAAGAGAAAGCCTGGGATGACCAATGGATTTTCTGGGTTGGACCATTTATTGGAGCTGCAATTGCTGCAATTTACCATCAGTATGTGCTCAGAGCTGGAGCTATTAAAGCTCTTGGATCTTTCAGGAGCAATGCTTGA 858 48.72 MGKDVEVAEQGEFQSKDYQDPPPAPLIDPEELTKWSLYRAAIAEFIATLLFLYVTVLTVIGYSHQSDPSVSTDPCNGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLVRALLYIIAQCAGAICGCGLVRAFQSAYYVRYNGGANMLSNGYNKGTGLGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIFNKEKAWDDQWIFWVGPFIGAAIAAIYHQYVLRAGAIKALGSFRSNA 285
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 34686464 34687506 - CmPI595203_02g021070.1 Cmu02g2107 410156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu02g2107 285 FunFam Probable aquaporin PIP1-2 24 285 - -
Cmu02g2107 285 Pfam Major intrinsic protein 31 266 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cmu02g2107 285 PRINTS Major intrinsic protein family signature 87 111 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cmu02g2107 285 PRINTS Major intrinsic protein family signature 209 231 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cmu02g2107 285 PRINTS Major intrinsic protein family signature 173 191 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cmu02g2107 285 PRINTS Major intrinsic protein family signature 39 58 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cmu02g2107 285 PRINTS Major intrinsic protein family signature 124 143 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cmu02g2107 285 PRINTS Major intrinsic protein family signature 249 269 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cmu02g2107 285 NCBIfam MIP family channel protein 43 265 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cmu02g2107 285 CDD MIP 39 269 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cmu02g2107 285 Gene3D Glycerol uptake facilitator protein. 24 285 IPR023271 -
Cmu02g2107 285 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 2 283 IPR034294 GO:0005886(PANTHER)|GO:0015250(PANTHER)
Cmu02g2107 285 SUPERFAMILY Aquaporin-like 30 271 IPR023271 -
Cmu02g2107 285 ProSitePatterns MIP family signature. 105 113 IPR022357 -
Cmu02g2107 285 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g1201 Cmu-Chr2:24784472 Cmu02g2107 Cmu-Chr2:34686464 2.90E-105 dispersed
Cmu02g2107 Cmu-Chr2:34686464 Cmu04g0933 Cmu-Chr4:23782880 5.40E-136 dispersed
Cmu04g0566 Cmu-Chr4:19089136 Cmu02g2107 Cmu-Chr2:34686464 2.10E-10 transposed
Cmu10g2754 Cmu-Chr10:34169189 Cmu02g2107 Cmu-Chr2:34686464 1.40E-120 wgd
Cmu02g2107 Cmu-Chr2:34686464 Cmu08g0692 Cmu-Chr8:19228752 5.00E-126 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu02g2107 K09872 - csv:101215300 547.74