Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu02g2110 ATGGCCATGGCTATAGCTCATCATAGAGAGAGCAGTAGTGGGAGTATAACCAGGCATCTTGATAGTTCTGGGAAGTACGTTCGATACACTGCAGAGCAGGTGGAGGCTCTTGAGCGAGTCTATGCTGAGTGCCCCAAGCCAAGTTCTCTTCGACGCCAGCAGCTTGTTCGGGAGTGCCCAATTCTTTCCAACATAGAACCCAAGCAGATCAAAGTTTGGTTTCAGAATCGCAGATGTAGGGAGAAGCAAAGGAAGGAGGCTTCTCGGCTGCAAACAGTGAACAGAAAATTGAATGCTATGAACAAGTTGTTAATGGAGGAGAATGATCGACTGCAGAAGCAAGTTTCGCAATTGGTGTGTGAAAATGGGTTTATGAGGCAGCAATTGCAAACAGTGCCAGCAGCAGCAACTACTGATGCAAGCTGTGATTCTGTGGTCACCACTCCTCAACCCTCTCGACGTGATGCTAATAACCCAGCTGGACTCCTCTCCATTGCAGAGGAGACCTTAGCAGAGTTCCTTTCAAAGGCTACAGGAACTGCTGTTGATTGGGTCCAGATGCCTGGGATGAAGCCTGGTCCGGATTCTGTTGGGATCTTTGCCATTTCACAAAGTTGTGGTGGAGTGGCAGCAAGAGCCTGTGGTCTTGTAAGTTTGGAGCCTTCGAAGATTGCAGAGATCCTTAAAGATCGTCCATCGTGGTTTCGTGATTGTCGAAGCCTTGAGGTTTTTACCATGTTTCCAGCTGGAAATGGTGGGACAATTGAACTTGTTTACACACAGGTATATGCTCCAACTACCCTTGCTCCTGCACGTGATTTTTGGACGCTAAGATATACGATAACCTTAGAAAATGGCAGCCTTGTGGTTTGCGAGAGATCGCTCTCTGGTTCTGGTGCCGGTCCTAGTGCAGCTGCTGCTGCTCAGTTTGTGAGAGCTGAGATGCTCCCAAGTGGATATCTGATTCGACCATGTGAGGGTGGTGGGTCCATTATACATATTGTTGATCACCTAAATCTTGAGGCATGGAATGTTCCTGAGGTGTTGCGACCACTTTATGAATCATCAAAAGTAGTGGCTCAGAAGATGACAATAGCAGCACTGCGGTACGTTAGGCAAATAGCCCAGGAGACAAGTGGTGAAGTGGTTTATGGTCTTGGCCGGCAACCTGCTGTTTTGCGGACCTTTAGCCAAAGATTGAGCAGGGGTTTTAATGATGCAGTGAATGGATTTAATGACAATGGATGGTCGTTGATTAATTGTGAAGGTGCTGAGGATGTGGTACTCACTGTGAATTCTACGAAAAATTTTGGCACAACATCGAACCCTGCTAACTCCTTGACATATCCTGGGGGAGTTCTTTGTGCAAAGGCATCCATGCTACTCCAAAATGTTCCTCCTGCTGTGTTAGTTCGTTTCTTGAGAGAACACCGCTCAGAGTGGGCTGATTTCAACATTGATGCATACTCTGCAGCAACCCTTAAGGCCAATTCATATGCATATCCAGGGATGAGACCCACAAGGTTTACTGGTAGCCAAATCATCATGCCACTCGGTCACACAATCGAGCACGAAGAGTTGCTTGAAGTAATTAGACTTGAAGGACATCCTATGGTACAAGAAGATGCTTTTGTTTCGAGAGACATTCATCTTCTTCAGATATGTAGTGGAATTGACGAGAATGCTGTAGGGGCCTGTTCAGAACTCATTTTTGCTCCTATTGATGAGATGTTTCCAGACGATGCTCCATTGCTGCCTTCTGGCTTTCGAATCATCCCATTGGATTCCAGAACAAGTGATGCAAAAGGTAGTCAACGGACTCTGGATCTAACATCGAGTCTTGAAGTGGGTTCTGGAACAAGCAATACTGCTGGAGATGCATCATCAAGTCAGAGTGCTAGATCGGTGTTAACCATAGCATTTCAGTTTCCTTTTGAAAGCAGCATGCAGGATAATGTTGCGAACATGGCACACCAGTACGTACGTAGCGTCATTTCCTCGGTACAGAGAGTTGCGATGGCCATATCTCCATCTGGAGGCAGTCCAGCGCTTGGTCCAAAGCTGTCTCCTGGTTCTCCAGAAGCTCTTACTCTAGCACATTGGATATGCAAGAGCTATAGTTTACAATTGGGAACGGAGTTGATCAAATCAGATTCCTTGGAAAGTGATTCCCTTTTGAAAAATCTCTGGAATCATCAGGATGCAATATTGTGCTGTTCGCTGAAGCAGTCACTGCCTGTTTTTCTGTTTGCAAACCAAGCTGGGCTTGACATGTTGGAGACAACTCTAGTGGCCTTACAAGACATCACGTTGGATAAGATATTTGACGAGTCGGGTCGCAAAGCCTTGTGTGCTGATTTCCCAAAGTTAATGCAGCAGGGATTCGCGTACTTGCCAGGAGGAATCTGTGCATCAACAATGGGACGACACGTTTCATACGAACAAGCCGTTGCATGGAAACCTTCTTCATTGGCTGTCCTCGTCCTCATCCATTGGAGCAGGAGCAGGAGGAATGAAGATGAAGATAAAGATGTTTGTTCTTCAATGTCTAATGCAATGCCTCCTTCTCCAAACTGTGGCCACCGAAAGTTACTAACGTTCGGCTACCAACTAAGATTTGTGCATTGCTTTGGTGGGAAGGGAATGAGTAAGCTTTATCTTTTGTTGGGTTTGACTTTTCTTTTTGAAGTGTTCAATCATTCTCTTTTTACCATAATTGGAAGAGCATTCATTGAGATATGTTCTGAAGTAATCAATAACATATTCGTAGTATTGTAA 2778 45.54 MAMAIAHHRESSSGSITRHLDSSGKYVRYTAEQVEALERVYAECPKPSSLRRQQLVRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLNAMNKLLMEENDRLQKQVSQLVCENGFMRQQLQTVPAAATTDASCDSVVTTPQPSRRDANNPAGLLSIAEETLAEFLSKATGTAVDWVQMPGMKPGPDSVGIFAISQSCGGVAARACGLVSLEPSKIAEILKDRPSWFRDCRSLEVFTMFPAGNGGTIELVYTQVYAPTTLAPARDFWTLRYTITLENGSLVVCERSLSGSGAGPSAAAAAQFVRAEMLPSGYLIRPCEGGGSIIHIVDHLNLEAWNVPEVLRPLYESSKVVAQKMTIAALRYVRQIAQETSGEVVYGLGRQPAVLRTFSQRLSRGFNDAVNGFNDNGWSLINCEGAEDVVLTVNSTKNFGTTSNPANSLTYPGGVLCAKASMLLQNVPPAVLVRFLREHRSEWADFNIDAYSAATLKANSYAYPGMRPTRFTGSQIIMPLGHTIEHEELLEVIRLEGHPMVQEDAFVSRDIHLLQICSGIDENAVGACSELIFAPIDEMFPDDAPLLPSGFRIIPLDSRTSDAKGSQRTLDLTSSLEVGSGTSNTAGDASSSQSARSVLTIAFQFPFESSMQDNVANMAHQYVRSVISSVQRVAMAISPSGGSPALGPKLSPGSPEALTLAHWICKSYSLQLGTELIKSDSLESDSLLKNLWNHQDAILCCSLKQSLPVFLFANQAGLDMLETTLVALQDITLDKIFDESGRKALCADFPKLMQQGFAYLPGGICASTMGRHVSYEQAVAWKPSSLAVLVLIHWSRSRRNEDEDKDVCSSMSNAMPPSPNCGHRKLLTFGYQLRFVHCFGGKGMSKLYLLLGLTFLFEVFNHSLFTIIGRAFIEICSEVINNIFVVL 925
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 34730168 34736492 + CmPI595203_02g021100.1 Cmu02g2110 410159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu02g2110 925 ProSiteProfiles 'Homeobox' domain profile. 20 84 IPR001356 GO:0003677(InterPro)
Cmu02g2110 925 Coils Coil 80 121 - -
Cmu02g2110 925 SMART START_1 164 374 IPR002913 GO:0008289(InterPro)
Cmu02g2110 925 CDD homeodomain 25 85 IPR001356 GO:0003677(InterPro)
Cmu02g2110 925 SUPERFAMILY Bet v1-like 164 376 - -
Cmu02g2110 925 FunFam Homeobox-leucine zipper protein REVOLUTA 25 80 - -
Cmu02g2110 925 Pfam Homeodomain 25 83 IPR001356 GO:0003677(InterPro)
Cmu02g2110 925 CDD bZIP 77 116 - -
Cmu02g2110 925 CDD START_ArGLABRA2_like 159 375 - -
Cmu02g2110 925 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 19 820 IPR044830 GO:0003700(InterPro)
Cmu02g2110 925 Gene3D - 19 91 - -
Cmu02g2110 925 Pfam MEKHLA domain 697 820 IPR013978 -
Cmu02g2110 925 SUPERFAMILY Homeodomain-like 22 87 IPR009057 -
Cmu02g2110 925 Gene3D - 201 379 IPR023393 -
Cmu02g2110 925 Pfam START domain 165 373 IPR002913 GO:0008289(InterPro)
Cmu02g2110 925 ProSiteProfiles START domain profile. 155 383 IPR002913 GO:0008289(InterPro)
Cmu02g2110 925 MobiDBLite consensus disorder prediction 599 629 - -
Cmu02g2110 925 SMART HOX_1 22 88 IPR001356 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g1323 Cmu-Chr1:26050812 Cmu02g2110 Cmu-Chr2:34730168 0.00E+00 dispersed
Cmu02g2110 Cmu-Chr2:34730168 Cmu03g1227 Cmu-Chr3:6868393 0.00E+00 dispersed
Cmu02g2110 Cmu-Chr2:34730168 Cmu01g2457 Cmu-Chr1:36523388 0.00E+00 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5828 PF01852 START 4.90E-46 CL0209 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu02g2110 K09338 - csv:101215773 1587.78