Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu02g2113 ATGAAAGAACGAAAAAGAGTTGGTGGTTTTTCTTTTCAATCAAGGAAGCTGTGTATTATTGGCGACAAAGAAAAACTGGGTTTGAGAGGTGAGACTGATCTTAAGGGTTTACATTTGGGGGAAAACGCAATCATTCGAATGAAAGAAGCAGAGAAAAATTTAGATCCCCAACTATGGCATGCCTGTGCAGGAGGCATGGTCCAGATGCCTGCGATTAACTCCAAGGTTTTCTACTTCCCTCAGGGTCACGCCGAGCACGCTCAGGCCACCGTCGATTTTACCTCTTCACTCAGAATCCCGCCGCTTATTCCTTGTCGAGTGCTCGCCGTTAAGTTCTTGGCTGACCATGAAACGGATGAGGTTTTTGCGAATATAAGAATGGTTCCACTGGCGAATAACGACCTCAATTTCGAAGAAGAGGGGGGTTTTGGGAGTAATGGGTCTGAGAATAATATGGAGAAACCGGCTTCTTTTGCCAAGACGTTGACTCAATCCGATGCCAACAACGGCGGTGGATTCTCGGTTCCGAGGTACTGTGCGGAGACGATATTTCCGCGGCTGGATTACACGGCGGATCCACCGGTTCAGACGGTGATTGCCAAGGACGTTCACGGCGAGGTTTGGAAGTTCCGCCATATTTACAGGGGGACGCCTCGCCGGCATTTGTTGACTACTGGGTGGAGTACTTTTGTGAATCAGAAGAAGCTCGTCGCCGGCGACTCGATTGTTTTTCTGAGATCCAAAAATGGCGACCTCTGTGTCGGAATCCGGCGAGCCAAAAGGGCAATTGGGTGTGCCGCCGATCACCCGTACGGATGGAATCCCGGCGGTGGAAATTGCATCCCACCTTATGGTGGATTGACGATGTTTTTAAGAGACGAGGACAACAAGTTGAGTAGAAAAGGGTCTTTGAGTTCCAGTGGTGGTAGTGGGAATTTGAGGGGAAAAGGTAAAGTGAGGCCGGAATCAGTGATGGAAGCGGCGGCGCTTGCGGCGAGTGGACAGCCGTTTGAGGTGGTTTATTACCCACGTGCCAGCACGCCGGAGTTCTGTGTGAAAGCCTCATCGGTTCGAGCCGCCATGAGGATCCAATGGTGCTCTGGTATGAGGTTCAAGATGCCATTTGAGACTGAGGATTCTTCTCGGATTAGTTGGTTTATGGGCACCATTTCTTCTGTTCAAGTTGCTGATCCTATCCGTTGGCCTAATTCTCCATGGCGGCTTCTTCAGGTGACATGGGATGAACCAGATTTGCTACAGAATGTGAAGCGTGTTAGCCCGTGGTTAGTTGAACTGGTATCGAACATGCCCGTCATTCAACTATCACCGTTTTCTCCACCGAGAAAGAAGTTTCGACTACCACAACACCCAGACTTTCCCCTCGACACTCAATTCCCACTGTCGTCATTTTCGAGCAATACCCTTAGGCCAAGCAGTCCCATGTGTTGTTTATCTGATAACACTTCTGTAGGCATACAGGGAGCCAGGCATACTCAATTTGGAATATCTTTATCAGATTTCCATCTCAACAAACTGCAATTAGGGCTGGTTCCATCCAGTTTTCAGCAGCTTGATTTTCACTCTAGGATTTCCAATAGATCAGTTACAGACCACAGAGACAGCAGCAGTCAGAACTCATCGGCGTTGCTAAACGGGGAAAAGACTGGTCCAAAGTTGGAAAGATCTGATTCGGTGAAGAAGCATCAGTTTTTACTCTTTGGTCAACCTATACTCACTGAACAGCAAATCACTTGCAGCTCGTCTGGTGACATTCGTTCACCTCAAACAGACAAAGGCTCCTTGGATGTGAATCTGGAGAGAGTGAAGTTTCTTTCCGATGGCGCAGGATCCACTTTCAAGCAGCAAATTTCTCCAAACAAGTCACCAGGAGTAGGATTTCCATGGTACCAAGGTTATCAAGCCACTGAACTCGGCCTAGACATCGGTCACTGCAAGGTATTTATGGAGTCAGAAGATGTGGGCCGGACACTCAACCTTTCAGTAATCGGCTCATATGAAGAACTATACAGGAGGCTCGCGAATATGTTCGGAATGGAAAAACCAGACATTCTTAGCCATGTACTGTACCAAGATGCAACAGGTGCTGTAAAACAAGCTGGAGATAAACCATTCAGTGATTTCATCAAAACAGCTAGAAGACTGACGATACTAACGGACTCGGGTTCGGACAAGCTGGGAAGGACAATGATGGATGGAATGAGAAGTGGTGAAAATGGATTAGATGCTTCAAACAAGACTGGCCCCTTGAGCATATTTGCCTAG 2283 47.79 MKERKRVGGFSFQSRKLCIIGDKEKLGLRGETDLKGLHLGENAIIRMKEAEKNLDPQLWHACAGGMVQMPAINSKVFYFPQGHAEHAQATVDFTSSLRIPPLIPCRVLAVKFLADHETDEVFANIRMVPLANNDLNFEEEGGFGSNGSENNMEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYTADPPVQTVIAKDVHGEVWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFLRSKNGDLCVGIRRAKRAIGCAADHPYGWNPGGGNCIPPYGGLTMFLRDEDNKLSRKGSLSSSGGSGNLRGKGKVRPESVMEAAALAASGQPFEVVYYPRASTPEFCVKASSVRAAMRIQWCSGMRFKMPFETEDSSRISWFMGTISSVQVADPIRWPNSPWRLLQVTWDEPDLLQNVKRVSPWLVELVSNMPVIQLSPFSPPRKKFRLPQHPDFPLDTQFPLSSFSSNTLRPSSPMCCLSDNTSVGIQGARHTQFGISLSDFHLNKLQLGLVPSSFQQLDFHSRISNRSVTDHRDSSSQNSSALLNGEKTGPKLERSDSVKKHQFLLFGQPILTEQQITCSSSGDIRSPQTDKGSLDVNLERVKFLSDGAGSTFKQQISPNKSPGVGFPWYQGYQATELGLDIGHCKVFMESEDVGRTLNLSVIGSYEELYRRLANMFGMEKPDILSHVLYQDATGAVKQAGDKPFSDFIKTARRLTILTDSGSDKLGRTMMDGMRSGENGLDASNKTGPLSIFA 760
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 34766490 34771116 - CmPI595203_02g021130.1 Cmu02g2113 410162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu02g2113 760 MobiDBLite consensus disorder prediction 533 561 - -
Cmu02g2113 760 Gene3D - 648 733 - -
Cmu02g2113 760 CDD B3_DNA 157 258 IPR003340 GO:0003677(InterPro)
Cmu02g2113 760 Gene3D - 156 260 IPR015300 -
Cmu02g2113 760 SMART B3_2 158 260 IPR003340 GO:0003677(InterPro)
Cmu02g2113 760 MobiDBLite consensus disorder prediction 298 318 - -
Cmu02g2113 760 MobiDBLite consensus disorder prediction 537 552 - -
Cmu02g2113 760 ProSiteProfiles PB1 domain profile. 648 728 IPR053793 -
Cmu02g2113 760 FunFam Auxin response factor 365 438 - -
Cmu02g2113 760 SUPERFAMILY DNA-binding pseudobarrel domain 153 262 IPR015300 -
Cmu02g2113 760 ProSiteProfiles B3 DNA-binding domain profile. 158 260 IPR003340 GO:0003677(InterPro)
Cmu02g2113 760 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 53 732 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cmu02g2113 760 FunFam Auxin response factor 156 260 - -
Cmu02g2113 760 Gene3D - 365 438 - -
Cmu02g2113 760 Pfam B3 DNA binding domain 158 259 IPR003340 GO:0003677(InterPro)
Cmu02g2113 760 Pfam Auxin response factor 327 410 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g2113 Cmu-Chr2:34766490 Cmu04g0940 Cmu-Chr4:23861307 2.50E-265 dispersed
Cmu08g1028 Cmu-Chr8:22575057 Cmu02g2113 Cmu-Chr2:34766490 1.00E-98 transposed
Cmu02g2113 Cmu-Chr2:34766490 Cmu08g0698 Cmu-Chr8:19268658 3.60E-211 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5829 PF02362 B3 1.50E-21 CL0405 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu02g2113 K14486 - csv:101216500 1365.52