Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmu02g2147 | ATGTCTTCTCGTCCTTCCGCGTTCGATGCTCTCATGTCTGGTGCTCGGGCCGCTGCCAAGAAAAAGCCTGTTAATTCTTCTCCCAAGAAGCGTAAAGCCCTTGATTCTTTAGACCCTCCTCCGAAACCTAGCTCTTCCCTTGCTCTGGAGTCAACGCCGGCCGTTGAATCGCAGTGCGGCAGTTCAATTGCAAATTTGGACAATCATGGAGGTACTCATCTGGTAAAGTCCGAGGACGCTGCTGATTTGGAGGAAACCAAGTTGCGTCAGGATAATGGTGGCAGTGTTGGACCCAAGAATGGGCCGTTTGCGAACAAGACGTGTGCGTCTAGTGTTCAAGAAAGAACTGCGAAATTGAAGAGCTCTATTCCAGAGTTGAAAAAGAAGGCCAAGGATTTCAACTCGAAGAATGTTGCATGTTGGAAAGAGGGCGAACGGGTTCCATTTTTGTTTCTGTGTTTGGGTTTCGATATGATTTCGGAGGAGTCTAGTAGGATTACTATCACCGATATAGTCTGCAACATGCTGAGGACCGTCATGGATACTACACCCGACGACTTGGTAGCCACTGTGTATCTTTTGGCGAATAAGATTGCTCCAGCACACGAAGGGCTTGAGTTGGGGATTGGGGATGCTTCTATTATCAAAGCTCTTTCTGAGGCATTTGGGAGGACAGAGGCACAGGTCAAAAAACAGTACAAGGAATTGGGAGATTTAGGTCTTGTTGCTAAAGCGAGCCGTTCATCTCAGTCTATGATGCGAAAGCCCGATGCTTTAACTATTACCAAAGTATTTGACATATTTCGGCTGATTGCTAAGGAATCTGGCAAGGATAGTCAGGAGAAGAAAAAGAACCATATCAAGTCACTGCTTGTTGCTGCCACTGACTGTGAACCTTTATATCTGATTAGATTGCTGCAGACAAAATTGCGAATTGGACTTGCTGAGCAGACTCTTTTAGCTGCATTAGGACAAGCAGCTGTATATGCTGAAAAACACTCAACTCCACCACCAAATATTCAATCTCCTCTAGAAGAGGCTTCTAAGATTGTAAAGCAGGTGTATTCTATACTCCCAGTTTATGATAAACTTGTCCCTGCTCTTCTTAGTGGTGGTGTGTGGAATCTTTCAAAAACATGCAACTTTACACCAGGAATTCCAATTGGACCTATGCTGGCAAAACCAACGAAAGGAGTGTCTGAAATCTTAAATAAATTCCAGGGTATGGAATTTACTTGTGAATACAAATATGATGGGGAACGTGCCCAGATACATTACATGGAAGATGGTTCAGTTGAGATATACAGTCGAAATGCTGAACGGAACACTGGAAAGTTCCCTGACGTTGTTCTCACGGTAGCAAGGATAAAGAAACCATCTGTAAGATCATTTATTTTGGATTGTGAACTTGTTGCTTACGATCGTGGAAAACAAAAGATTCTGCCTTTTCAGATTCTAAGTACTCGAGCTCGTAAGAATGTGGCCCTGAGTGATATTAAGGTTGAAGTGTGTGTCTTTGCTTTTGATTTACTGTATCTTGATGGCCAACCACTTATCCAGAGAGAACTGAATGTTCGCCGAGAGCTTCTCTACGATTCATTTATTGAAGAACCTGGATATTTTCAATTTGCCACAGCAATAATAACAAATGATCTTGAGGAAATACAAAAGTTCCTTGATGCATCGGTTGATCAAAGCTGTGAGGGTTTAATCATCAAAACACTGAACCGCGATGCTACTTATGAGCCTTCCAAGAGGTCCCTTAACTGGCTAAAACTGAAGAAGGATTACATAGACAACATAGGGGATTCACTTGATCTGGTACCAATTGCTGCTTTCCATGGTCGTGGGAAACGTACAGGTGTCTATGGTGCATTTCTCCTTGCCTGTTATGATAATGACAATGAAGAATTTCAAAGCATTTGTAAGATAGGAACTGGGTTTTCTGAAGCAATGCTTGAGGAACGTTCTGCTAGTCTCCGTTCTAAAGTCATTCCTGAACCAAAGTCATATTATCGGTATGGAGATACAATCAATCCAGATGTTTGGTTTGAGCCTACTGAGGTTTGGGAGGTTAAAGCAGCAGATTTGACTATTAGCCCAGTTCATCGTGCAGGAGTTGGCATTGTGGATTCAGTCAAGGGAATTTCTCTCCGATTTCCACGTCTTGTTCGTGTGAGGAAAGACAAAAATCCTGAGGAAGCCTCATCATCTGAGCAGTCTCCTCTGTTGACTGGGGCAGAAACAGCCCGTGCTATCACATGGGGTTGTGCTGAAAATGGCCTGTTTGCTTCTTGTATATTTGTGGTCAACTGGCGAGATTTCGGAGTAACTTTTTGTCTTTCTTGCCCTCGTTTGGAAATGAATGAAACTCCCCGGATACACAAGCAATCAGACAGGAGAAATCTCAGAATTGGAATTGCATCTTATATGGCTAAAACAATTCTGGAAAAATTTGACCCCGTCTGTTTCTCTCGGACGGAGTACGAAAAAGAAAAAGTTGAGTGTGAAGTAAAAAGGGTGGCCATAAAAACTTCACTCTAG | 2544 | 43.04 | MSSRPSAFDALMSGARAAAKKKPVNSSPKKRKALDSLDPPPKPSSSLALESTPAVESQCGSSIANLDNHGGTHLVKSEDAADLEETKLRQDNGGSVGPKNGPFANKTCASSVQERTAKLKSSIPELKKKAKDFNSKNVACWKEGERVPFLFLCLGFDMISEESSRITITDIVCNMLRTVMDTTPDDLVATVYLLANKIAPAHEGLELGIGDASIIKALSEAFGRTEAQVKKQYKELGDLGLVAKASRSSQSMMRKPDALTITKVFDIFRLIAKESGKDSQEKKKNHIKSLLVAATDCEPLYLIRLLQTKLRIGLAEQTLLAALGQAAVYAEKHSTPPPNIQSPLEEASKIVKQVYSILPVYDKLVPALLSGGVWNLSKTCNFTPGIPIGPMLAKPTKGVSEILNKFQGMEFTCEYKYDGERAQIHYMEDGSVEIYSRNAERNTGKFPDVVLTVARIKKPSVRSFILDCELVAYDRGKQKILPFQILSTRARKNVALSDIKVEVCVFAFDLLYLDGQPLIQRELNVRRELLYDSFIEEPGYFQFATAIITNDLEEIQKFLDASVDQSCEGLIIKTLNRDATYEPSKRSLNWLKLKKDYIDNIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDNDNEEFQSICKIGTGFSEAMLEERSASLRSKVIPEPKSYYRYGDTINPDVWFEPTEVWEVKAADLTISPVHRAGVGIVDSVKGISLRFPRLVRVRKDKNPEEASSSEQSPLLTGAETARAITWGCAENGLFASCIFVVNWRDFGVTFCLSCPRLEMNETPRIHKQSDRRNLRIGIASYMAKTILEKFDPVCFSRTEYEKEKVECEVKRVAIKTSL | 847 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 35078703 | 35089978 | - | CmPI595203_02g021470.1 | Cmu02g2147 | 410196 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmu02g2147 | 847 | SUPERFAMILY | ATP-dependent DNA ligase DNA-binding domain | 130 | 381 | IPR036599 | GO:0003677(InterPro)|GO:0003910(InterPro)|GO:0006281(InterPro)|GO:0006310(InterPro) | |
Cmu02g2147 | 847 | Pfam | DNA ligase N terminus | 148 | 323 | IPR012308 | GO:0003677(InterPro)|GO:0003910(InterPro)|GO:0006281(InterPro)|GO:0006310(InterPro) | |
Cmu02g2147 | 847 | Gene3D | - | 125 | 392 | IPR036599 | GO:0003677(InterPro)|GO:0003910(InterPro)|GO:0006281(InterPro)|GO:0006310(InterPro) | |
Cmu02g2147 | 847 | FunFam | DNA ligase | 599 | 749 | - | - | |
Cmu02g2147 | 847 | ProSitePatterns | ATP-dependent DNA ligase signature 2. | 568 | 594 | IPR016059 | GO:0003909(InterPro) | |
Cmu02g2147 | 847 | NCBIfam | ATP-dependent DNA ligase | 206 | 740 | IPR000977 | GO:0003910(InterPro)|GO:0005524(InterPro)|GO:0071897(InterPro) | |
Cmu02g2147 | 847 | CDD | Adenylation_DNA_ligase_I_Euk | 379 | 597 | - | - | |
Cmu02g2147 | 847 | MobiDBLite | consensus disorder prediction | 45 | 68 | - | - | |
Cmu02g2147 | 847 | CDD | OBF_DNA_ligase_I | 602 | 740 | - | - | |
Cmu02g2147 | 847 | SUPERFAMILY | DNA ligase/mRNA capping enzyme, catalytic domain | 382 | 600 | - | - | |
Cmu02g2147 | 847 | MobiDBLite | consensus disorder prediction | 1 | 73 | - | - | |
Cmu02g2147 | 847 | PANTHER | DNA LIGASE 1/3 FAMILY MEMBER | 120 | 741 | IPR050191 | GO:0003910(PANTHER)|GO:0005634(PANTHER)|GO:0005739(PANTHER)|GO:0006266(PANTHER)|GO:0006273(PANTHER) | |
Cmu02g2147 | 847 | Gene3D | - | 603 | 744 | IPR012340 | - | |
Cmu02g2147 | 847 | FunFam | DNA ligase | 390 | 596 | - | - | |
Cmu02g2147 | 847 | ProSitePatterns | ATP-dependent DNA ligase AMP-binding site. | 414 | 422 | IPR016059 | GO:0003909(InterPro) | |
Cmu02g2147 | 847 | Pfam | ATP dependent DNA ligase domain | 390 | 594 | IPR012310 | GO:0003910(InterPro)|GO:0005524(InterPro)|GO:0006281(InterPro)|GO:0006310(InterPro) | |
Cmu02g2147 | 847 | ProSiteProfiles | ATP-dependent DNA ligase family profile. | 496 | 632 | IPR012310 | GO:0003910(InterPro)|GO:0005524(InterPro)|GO:0006281(InterPro)|GO:0006310(InterPro) | |
Cmu02g2147 | 847 | SUPERFAMILY | Nucleic acid-binding proteins | 602 | 741 | IPR012340 | - | |
Cmu02g2147 | 847 | Gene3D | DNA ligase/mRNA capping enzyme | 419 | 544 | - | - | |
Cmu02g2147 | 847 | FunFam | DNA ligase | 125 | 392 | - | - | |
Cmu02g2147 | 847 | Gene3D | - | 400 | 599 | - | - | |
Cmu02g2147 | 847 | Pfam | ATP dependent DNA ligase C terminal region | 619 | 730 | IPR012309 | GO:0003910(InterPro)|GO:0006281(InterPro)|GO:0006310(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmu02g2147 | Cmu-Chr2:35078703 | Cmu07g1619 | Cmu-Chr7:31376246 | 1.00E-134 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmu02g2147 | K10747 | - | csv:101213447 | 1373.22 |