Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu02g2147 ATGTCTTCTCGTCCTTCCGCGTTCGATGCTCTCATGTCTGGTGCTCGGGCCGCTGCCAAGAAAAAGCCTGTTAATTCTTCTCCCAAGAAGCGTAAAGCCCTTGATTCTTTAGACCCTCCTCCGAAACCTAGCTCTTCCCTTGCTCTGGAGTCAACGCCGGCCGTTGAATCGCAGTGCGGCAGTTCAATTGCAAATTTGGACAATCATGGAGGTACTCATCTGGTAAAGTCCGAGGACGCTGCTGATTTGGAGGAAACCAAGTTGCGTCAGGATAATGGTGGCAGTGTTGGACCCAAGAATGGGCCGTTTGCGAACAAGACGTGTGCGTCTAGTGTTCAAGAAAGAACTGCGAAATTGAAGAGCTCTATTCCAGAGTTGAAAAAGAAGGCCAAGGATTTCAACTCGAAGAATGTTGCATGTTGGAAAGAGGGCGAACGGGTTCCATTTTTGTTTCTGTGTTTGGGTTTCGATATGATTTCGGAGGAGTCTAGTAGGATTACTATCACCGATATAGTCTGCAACATGCTGAGGACCGTCATGGATACTACACCCGACGACTTGGTAGCCACTGTGTATCTTTTGGCGAATAAGATTGCTCCAGCACACGAAGGGCTTGAGTTGGGGATTGGGGATGCTTCTATTATCAAAGCTCTTTCTGAGGCATTTGGGAGGACAGAGGCACAGGTCAAAAAACAGTACAAGGAATTGGGAGATTTAGGTCTTGTTGCTAAAGCGAGCCGTTCATCTCAGTCTATGATGCGAAAGCCCGATGCTTTAACTATTACCAAAGTATTTGACATATTTCGGCTGATTGCTAAGGAATCTGGCAAGGATAGTCAGGAGAAGAAAAAGAACCATATCAAGTCACTGCTTGTTGCTGCCACTGACTGTGAACCTTTATATCTGATTAGATTGCTGCAGACAAAATTGCGAATTGGACTTGCTGAGCAGACTCTTTTAGCTGCATTAGGACAAGCAGCTGTATATGCTGAAAAACACTCAACTCCACCACCAAATATTCAATCTCCTCTAGAAGAGGCTTCTAAGATTGTAAAGCAGGTGTATTCTATACTCCCAGTTTATGATAAACTTGTCCCTGCTCTTCTTAGTGGTGGTGTGTGGAATCTTTCAAAAACATGCAACTTTACACCAGGAATTCCAATTGGACCTATGCTGGCAAAACCAACGAAAGGAGTGTCTGAAATCTTAAATAAATTCCAGGGTATGGAATTTACTTGTGAATACAAATATGATGGGGAACGTGCCCAGATACATTACATGGAAGATGGTTCAGTTGAGATATACAGTCGAAATGCTGAACGGAACACTGGAAAGTTCCCTGACGTTGTTCTCACGGTAGCAAGGATAAAGAAACCATCTGTAAGATCATTTATTTTGGATTGTGAACTTGTTGCTTACGATCGTGGAAAACAAAAGATTCTGCCTTTTCAGATTCTAAGTACTCGAGCTCGTAAGAATGTGGCCCTGAGTGATATTAAGGTTGAAGTGTGTGTCTTTGCTTTTGATTTACTGTATCTTGATGGCCAACCACTTATCCAGAGAGAACTGAATGTTCGCCGAGAGCTTCTCTACGATTCATTTATTGAAGAACCTGGATATTTTCAATTTGCCACAGCAATAATAACAAATGATCTTGAGGAAATACAAAAGTTCCTTGATGCATCGGTTGATCAAAGCTGTGAGGGTTTAATCATCAAAACACTGAACCGCGATGCTACTTATGAGCCTTCCAAGAGGTCCCTTAACTGGCTAAAACTGAAGAAGGATTACATAGACAACATAGGGGATTCACTTGATCTGGTACCAATTGCTGCTTTCCATGGTCGTGGGAAACGTACAGGTGTCTATGGTGCATTTCTCCTTGCCTGTTATGATAATGACAATGAAGAATTTCAAAGCATTTGTAAGATAGGAACTGGGTTTTCTGAAGCAATGCTTGAGGAACGTTCTGCTAGTCTCCGTTCTAAAGTCATTCCTGAACCAAAGTCATATTATCGGTATGGAGATACAATCAATCCAGATGTTTGGTTTGAGCCTACTGAGGTTTGGGAGGTTAAAGCAGCAGATTTGACTATTAGCCCAGTTCATCGTGCAGGAGTTGGCATTGTGGATTCAGTCAAGGGAATTTCTCTCCGATTTCCACGTCTTGTTCGTGTGAGGAAAGACAAAAATCCTGAGGAAGCCTCATCATCTGAGCAGTCTCCTCTGTTGACTGGGGCAGAAACAGCCCGTGCTATCACATGGGGTTGTGCTGAAAATGGCCTGTTTGCTTCTTGTATATTTGTGGTCAACTGGCGAGATTTCGGAGTAACTTTTTGTCTTTCTTGCCCTCGTTTGGAAATGAATGAAACTCCCCGGATACACAAGCAATCAGACAGGAGAAATCTCAGAATTGGAATTGCATCTTATATGGCTAAAACAATTCTGGAAAAATTTGACCCCGTCTGTTTCTCTCGGACGGAGTACGAAAAAGAAAAAGTTGAGTGTGAAGTAAAAAGGGTGGCCATAAAAACTTCACTCTAG 2544 43.04 MSSRPSAFDALMSGARAAAKKKPVNSSPKKRKALDSLDPPPKPSSSLALESTPAVESQCGSSIANLDNHGGTHLVKSEDAADLEETKLRQDNGGSVGPKNGPFANKTCASSVQERTAKLKSSIPELKKKAKDFNSKNVACWKEGERVPFLFLCLGFDMISEESSRITITDIVCNMLRTVMDTTPDDLVATVYLLANKIAPAHEGLELGIGDASIIKALSEAFGRTEAQVKKQYKELGDLGLVAKASRSSQSMMRKPDALTITKVFDIFRLIAKESGKDSQEKKKNHIKSLLVAATDCEPLYLIRLLQTKLRIGLAEQTLLAALGQAAVYAEKHSTPPPNIQSPLEEASKIVKQVYSILPVYDKLVPALLSGGVWNLSKTCNFTPGIPIGPMLAKPTKGVSEILNKFQGMEFTCEYKYDGERAQIHYMEDGSVEIYSRNAERNTGKFPDVVLTVARIKKPSVRSFILDCELVAYDRGKQKILPFQILSTRARKNVALSDIKVEVCVFAFDLLYLDGQPLIQRELNVRRELLYDSFIEEPGYFQFATAIITNDLEEIQKFLDASVDQSCEGLIIKTLNRDATYEPSKRSLNWLKLKKDYIDNIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDNDNEEFQSICKIGTGFSEAMLEERSASLRSKVIPEPKSYYRYGDTINPDVWFEPTEVWEVKAADLTISPVHRAGVGIVDSVKGISLRFPRLVRVRKDKNPEEASSSEQSPLLTGAETARAITWGCAENGLFASCIFVVNWRDFGVTFCLSCPRLEMNETPRIHKQSDRRNLRIGIASYMAKTILEKFDPVCFSRTEYEKEKVECEVKRVAIKTSL 847
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 35078703 35089978 - CmPI595203_02g021470.1 Cmu02g2147 410196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu02g2147 847 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 130 381 IPR036599 GO:0003677(InterPro)|GO:0003910(InterPro)|GO:0006281(InterPro)|GO:0006310(InterPro)
Cmu02g2147 847 Pfam DNA ligase N terminus 148 323 IPR012308 GO:0003677(InterPro)|GO:0003910(InterPro)|GO:0006281(InterPro)|GO:0006310(InterPro)
Cmu02g2147 847 Gene3D - 125 392 IPR036599 GO:0003677(InterPro)|GO:0003910(InterPro)|GO:0006281(InterPro)|GO:0006310(InterPro)
Cmu02g2147 847 FunFam DNA ligase 599 749 - -
Cmu02g2147 847 ProSitePatterns ATP-dependent DNA ligase signature 2. 568 594 IPR016059 GO:0003909(InterPro)
Cmu02g2147 847 NCBIfam ATP-dependent DNA ligase 206 740 IPR000977 GO:0003910(InterPro)|GO:0005524(InterPro)|GO:0071897(InterPro)
Cmu02g2147 847 CDD Adenylation_DNA_ligase_I_Euk 379 597 - -
Cmu02g2147 847 MobiDBLite consensus disorder prediction 45 68 - -
Cmu02g2147 847 CDD OBF_DNA_ligase_I 602 740 - -
Cmu02g2147 847 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 382 600 - -
Cmu02g2147 847 MobiDBLite consensus disorder prediction 1 73 - -
Cmu02g2147 847 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 120 741 IPR050191 GO:0003910(PANTHER)|GO:0005634(PANTHER)|GO:0005739(PANTHER)|GO:0006266(PANTHER)|GO:0006273(PANTHER)
Cmu02g2147 847 Gene3D - 603 744 IPR012340 -
Cmu02g2147 847 FunFam DNA ligase 390 596 - -
Cmu02g2147 847 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 414 422 IPR016059 GO:0003909(InterPro)
Cmu02g2147 847 Pfam ATP dependent DNA ligase domain 390 594 IPR012310 GO:0003910(InterPro)|GO:0005524(InterPro)|GO:0006281(InterPro)|GO:0006310(InterPro)
Cmu02g2147 847 ProSiteProfiles ATP-dependent DNA ligase family profile. 496 632 IPR012310 GO:0003910(InterPro)|GO:0005524(InterPro)|GO:0006281(InterPro)|GO:0006310(InterPro)
Cmu02g2147 847 SUPERFAMILY Nucleic acid-binding proteins 602 741 IPR012340 -
Cmu02g2147 847 Gene3D DNA ligase/mRNA capping enzyme 419 544 - -
Cmu02g2147 847 FunFam DNA ligase 125 392 - -
Cmu02g2147 847 Gene3D - 400 599 - -
Cmu02g2147 847 Pfam ATP dependent DNA ligase C terminal region 619 730 IPR012309 GO:0003910(InterPro)|GO:0006281(InterPro)|GO:0006310(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g2147 Cmu-Chr2:35078703 Cmu07g1619 Cmu-Chr7:31376246 1.00E-134 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu02g2147 K10747 - csv:101213447 1373.22