Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu02g2147 ATGTCTTCTCGTCCTTCCGCGTTCGATGCTCTCATGTCTGGTGCTCGGGCCGCTGCCAAGAAAAAGCCTGTTAATTCTTCTCCCAAGAAGCGTAAAGCCCTTGATTCTTTAGACCCTCCTCCGAAACCTAGCTCTTCCCTTGCTCTGGAGTCAACGCCGGCCGTTGAATCGCAGTGCGGCAGTTCAATTGCAAATTTGGACAATCATGGAGGTACTCATCTGGTAAAGTCCGAGGACGCTGCTGATTTGGAGGAAACCAAGTTGCGTCAGGATAATGGTGGCAGTGTTGGACCCAAGAATGGGCCGTTTGCGAACAAGACGTGTGCGTCTAGTGTTCAAGAAAGAACTGCGAAATTGAAGAGCTCTATTCCAGAGTTGAAAAAGAAGGCCAAGGATTTCAACTCGAAGAATGTTGCATGTTGGAAAGAGGGCGAACGGGTTCCATTTTTGTTTCTGTGTTTGGGTTTCGATATGATTTCGGAGGAGTCTAGTAGGATTACTATCACCGATATAGTCTGCAACATGCTGAGGACCGTCATGGATACTACACCCGACGACTTGGTAGCCACTGTGTATCTTTTGGCGAATAAGATTGCTCCAGCACACGAAGGGCTTGAGTTGGGGATTGGGGATGCTTCTATTATCAAAGCTCTTTCTGAGGCATTTGGGAGGACAGAGGCACAGGTCAAAAAACAGTACAAGGAATTGGGAGATTTAGGTCTTGTTGCTAAAGCGAGCCGTTCATCTCAGTCTATGATGCGAAAGCCCGATGCTTTAACTATTACCAAAGTATTTGACATATTTCGGCTGATTGCTAAGGAATCTGGCAAGGATAGTCAGGAGAAGAAAAAGAACCATATCAAGTCACTGCTTGTTGCTGCCACTGACTGTGAACCTTTATATCTGATTAGATTGCTGCAGACAAAATTGCGAATTGGACTTGCTGAGCAGACTCTTTTAGCTGCATTAGGACAAGCAGCTGTATATGCTGAAAAACACTCAACTCCACCACCAAATATTCAATCTCCTCTAGAAGAGGCTTCTAAGATTGTAAAGCAGGTGTATTCTATACTCCCAGTTTATGATAAACTTGTCCCTGCTCTTCTTAGTGGTGGTGTGTGGAATCTTTCAAAAACATGCAACTTTACACCAGGAATTCCAATTGGACCTATGCTGGCAAAACCAACGAAAGGAGTGTCTGAAATCTTAAATAAATTCCAGGGTATGGAATTTACTTGTGAATACAAATATGATGGGGAACGTGCCCAGATACATTACATGGAAGATGGTTCAGTTGAGATATACAGTCGAAATGCTGAACGGAACACTGGAAAGTTCCCTGACGTTGTTCTCACGGTAGCAAGGATAAAGAAACCATCTGTAAGATCATTTATTTTGGATTGTGAACTTGTTGCTTACGATCGTGGAAAACAAAAGATTCTGCCTTTTCAGATTCTAAGTACTCGAGCTCGTAAGAATGTGGCCCTGAGTGATATTAAGGTTGAAGTGTGTGTCTTTGCTTTTGATTTACTGTATCTTGATGGCCAACCACTTATCCAGAGAGAACTGAATGTTCGCCGAGAGCTTCTCTACGATTCATTTATTGAAGAACCTGGATATTTTCAATTTGCCACAGCAATAATAACAAATGATCTTGAGGAAATACAAAAGTTCCTTGATGCATCGGTTGATCAAAGCTGTGAGGGTTTAATCATCAAAACACTGAACCGCGATGCTACTTATGAGCCTTCCAAGAGGTCCCTTAACTGGCTAAAACTGAAGAAGGATTACATAGACAACATAGGGGATTCACTTGATCTGGTACCAATTGCTGCTTTCCATGGTCGTGGGAAACGTACAGGTGTCTATGGTGCATTTCTCCTTGCCTGTTATGATAATGACAATGAAGAATTTCAAAGCATTTGTAAGATAGGAACTGGGTTTTCTGAAGCAATGCTTGAGGAACGTTCTGCTAGTCTCCGTTCTAAAGTCATTCCTGAACCAAAGTCATATTATCGGTATGGAGATACAATCAATCCAGATGTTTGGTTTGAGCCTACTGAGGTTTGGGAGGTTAAAGCAGCAGATTTGACTATTAGCCCAGTTCATCGTGCAGGAGTTGGCATTGTGGATTCAGTCAAGGGAATTTCTCTCCGATTTCCACGTCTTGTTCGTGTGAGGAAAGACAAAAATCCTGAGGAAGCCTCATCATCTGAGCAGTCTCCTCTGTTGACTGGGGCAGAAACAGCCCGTGCTATCACATGGGGTTGTGCTGAAAATGGCCTGTTTGCTTCTTGTATATTTGTGGTCAACTGGCGAGATTTCGGAGTAACTTTTTGTCTTTCTTGCCCTCGTTTGGAAATGAATGAAACTCCCCGGATACACAAGCAATCAGACAGGAGAAATCTCAGAATTGGAATTGCATCTTATATGGCTAAAACAATTCTGGAAAAATTTGACCCCGTCTGTTTCTCTCGGACGGAGTACGAAAAAGAAAAAGTTGAGTGTGAAGTAAAAAGGGTGGCCATAAAAACTTCACTCTAG 2544 43.04 MSSRPSAFDALMSGARAAAKKKPVNSSPKKRKALDSLDPPPKPSSSLALESTPAVESQCGSSIANLDNHGGTHLVKSEDAADLEETKLRQDNGGSVGPKNGPFANKTCASSVQERTAKLKSSIPELKKKAKDFNSKNVACWKEGERVPFLFLCLGFDMISEESSRITITDIVCNMLRTVMDTTPDDLVATVYLLANKIAPAHEGLELGIGDASIIKALSEAFGRTEAQVKKQYKELGDLGLVAKASRSSQSMMRKPDALTITKVFDIFRLIAKESGKDSQEKKKNHIKSLLVAATDCEPLYLIRLLQTKLRIGLAEQTLLAALGQAAVYAEKHSTPPPNIQSPLEEASKIVKQVYSILPVYDKLVPALLSGGVWNLSKTCNFTPGIPIGPMLAKPTKGVSEILNKFQGMEFTCEYKYDGERAQIHYMEDGSVEIYSRNAERNTGKFPDVVLTVARIKKPSVRSFILDCELVAYDRGKQKILPFQILSTRARKNVALSDIKVEVCVFAFDLLYLDGQPLIQRELNVRRELLYDSFIEEPGYFQFATAIITNDLEEIQKFLDASVDQSCEGLIIKTLNRDATYEPSKRSLNWLKLKKDYIDNIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDNDNEEFQSICKIGTGFSEAMLEERSASLRSKVIPEPKSYYRYGDTINPDVWFEPTEVWEVKAADLTISPVHRAGVGIVDSVKGISLRFPRLVRVRKDKNPEEASSSEQSPLLTGAETARAITWGCAENGLFASCIFVVNWRDFGVTFCLSCPRLEMNETPRIHKQSDRRNLRIGIASYMAKTILEKFDPVCFSRTEYEKEKVECEVKRVAIKTSL 847
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 35078703 35089978 - CmPI595203_02g021470.1 Cmu02g2147 410196

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu02g2147 847 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 130 381 IPR036599 GO:0003677(InterPro)|GO:0003910(InterPro)|GO:0006281(InterPro)|GO:0006310(InterPro)
Cmu02g2147 847 Pfam DNA ligase N terminus 148 323 IPR012308 GO:0003677(InterPro)|GO:0003910(InterPro)|GO:0006281(InterPro)|GO:0006310(InterPro)
Cmu02g2147 847 Gene3D - 125 392 IPR036599 GO:0003677(InterPro)|GO:0003910(InterPro)|GO:0006281(InterPro)|GO:0006310(InterPro)
Cmu02g2147 847 FunFam DNA ligase 599 749 - -
Cmu02g2147 847 ProSitePatterns ATP-dependent DNA ligase signature 2. 568 594 IPR016059 GO:0003909(InterPro)
Cmu02g2147 847 NCBIfam ATP-dependent DNA ligase 206 740 IPR000977 GO:0003910(InterPro)|GO:0005524(InterPro)|GO:0071897(InterPro)
Cmu02g2147 847 CDD Adenylation_DNA_ligase_I_Euk 379 597 - -
Cmu02g2147 847 MobiDBLite consensus disorder prediction 45 68 - -
Cmu02g2147 847 CDD OBF_DNA_ligase_I 602 740 - -
Cmu02g2147 847 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 382 600 - -
Cmu02g2147 847 MobiDBLite consensus disorder prediction 1 73 - -
Cmu02g2147 847 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 120 741 IPR050191 GO:0003910(PANTHER)|GO:0005634(PANTHER)|GO:0005739(PANTHER)|GO:0006266(PANTHER)|GO:0006273(PANTHER)
Cmu02g2147 847 Gene3D - 603 744 IPR012340 -
Cmu02g2147 847 FunFam DNA ligase 390 596 - -
Cmu02g2147 847 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 414 422 IPR016059 GO:0003909(InterPro)
Cmu02g2147 847 Pfam ATP dependent DNA ligase domain 390 594 IPR012310 GO:0003910(InterPro)|GO:0005524(InterPro)|GO:0006281(InterPro)|GO:0006310(InterPro)
Cmu02g2147 847 ProSiteProfiles ATP-dependent DNA ligase family profile. 496 632 IPR012310 GO:0003910(InterPro)|GO:0005524(InterPro)|GO:0006281(InterPro)|GO:0006310(InterPro)
Cmu02g2147 847 SUPERFAMILY Nucleic acid-binding proteins 602 741 IPR012340 -
Cmu02g2147 847 Gene3D DNA ligase/mRNA capping enzyme 419 544 - -
Cmu02g2147 847 FunFam DNA ligase 125 392 - -
Cmu02g2147 847 Gene3D - 400 599 - -
Cmu02g2147 847 Pfam ATP dependent DNA ligase C terminal region 619 730 IPR012309 GO:0003910(InterPro)|GO:0006281(InterPro)|GO:0006310(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu02g2147 K10747 - - csv:101213447 1373.22
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g2147 Cmu-Chr2:35078703 Cmu07g1619 Cmu-Chr7:31376246 1.00E-134 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g1100 . . . Bda09g01436 . . . . . . . . . . . . . . . . . . . . Cla02g02101 Cam02g2230 Cec02g2268 Cco02g2308 Clacu02g2212 Cmu02g2147 Cre02g2464 . . . . . Csa06g01233 Chy11g00843 . Blo08g00019 . . . Bpe08g00178 . Bma07g00168 . Sed05g2803 . Cmo20g00553 . Cma20g00522 . Car20g00461 Cpe16g00505 . Bhi10g00144 Tan05g0202 Cmetu11g1276 . Hepe08g0926 . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmu08g0021 . 106 689 Core DNA Replication Machinery Family AT4G14700 65.5 5.8e-220 761.1
Cmu08g0021 . 106 689 Core DNA Replication Machinery Family AT4G12620 67.8 2.0e-228 789.3
Cmu08g1512 . 55 408 Core DNA Replication Machinery Family AT2G37560 65.0 3.4e-137 485.0
Cmu07g0520 . 9 410 Core DNA Replication Machinery Family AT2G01120 64.8 3.6e-152 535.0
Cmu06g0359 . 2 453 Core DNA Replication Machinery Family AT4G29910 60.4 1.2e-152 537.0
Cmu11g0788 . 1 254 Core DNA Replication Machinery Family AT1G26840 68.9 2.8e-92 335.5
Cmu09g2159 . 68 861 Core DNA Replication Machinery Family AT1G79150 59.4 4.9e-246 847.8
Cmu10g2068 . 8 940 Core DNA Replication Machinery Family AT1G44900 75.6 0.0e+00 1354.0
Cmu01g2390 . 120 694 Core DNA Replication Machinery Family AT5G46280 80.9 1.4e-268 922.2
Cmu02g0504 . 1 845 Core DNA Replication Machinery Family AT2G16440 76.2 0.0e+00 1153.7
Cmu11g0351 . 1 735 Core DNA Replication Machinery Family AT2G07690 78.4 0.0e+00 1112.4
Cmu01g2539 . 7 801 Core DNA Replication Machinery Family AT5G44635 73.3 0.0e+00 1152.9
Cmu09g0496 . 4 722 Core DNA Replication Machinery Family AT4G02060 85.3 0.0e+00 1219.9
Cmu02g1962 . 55 521 Core DNA Replication Machinery Family AT2G29680 61.9 5.4e-163 571.2
Cmu02g1962 . 37 482 Core DNA Replication Machinery Family AT1G07270 58.8 2.6e-143 505.8
Cmu09g0850 . 1 593 Core DNA Replication Machinery Family AT3G25100 76.2 1.2e-257 885.9
Cmu10g2776 . 12 783 Core DNA Replication Machinery Family AT3G09660 72.6 0.0e+00 1081.2
Cmu09g1547 . 9 629 Core DNA Replication Machinery Family AT2G14050 79.0 8.3e-286 979.5
Cmu02g1192 . 1908 2312 Core DNA Replication Machinery Family AT2G20980 56.5 1.3e-116 416.8
Cmu09g0256 . 1 192 Core DNA Replication Machinery Family AT1G80190 67.5 1.0e-72 270.0
Cmu11g0623 . 602 769 Core DNA Replication Machinery Family AT1G19080 68.5 1.4e-63 239.6
Cmu11g0623 . 602 769 Core DNA Replication Machinery Family AT3G55490 68.5 1.4e-63 239.6
Cmu05g0160 . 15 164 Core DNA Replication Machinery Family AT5G49010 65.3 1.5e-49 193.0
Cmu02g1237 . 1 1538 Core DNA Replication Machinery Family AT5G67100 60.4 0.0e+00 1750.3
Cmu04g1203 . 151 768 Core DNA Replication Machinery Family AT1G67630 60.1 2.5e-207 718.8
Cmu06g0203 . 1 446 Core DNA Replication Machinery Family AT1G67320 64.3 1.1e-181 633.3
Cmu08g0150 . 26 452 Core DNA Replication Machinery Family AT5G41880 62.8 1.3e-165 579.7
Cmu01g1468 . 1 1086 Core DNA Replication Machinery Family AT5G63960 80.7 0.0e+00 1797.3
Cmu10g2486 . 1 419 Core DNA Replication Machinery Family AT2G42120 75.9 3.2e-196 681.4
Cmu06g0203 . 1 446 Core DNA Replication Machinery Family AT1G67320 64.3 1.1e-181 633.3
Cmu01g0526 . 1 127 Core DNA Replication Machinery Family AT1G09815 60.8 3.3e-37 151.4
Cmu02g2187 . 1 2095 Core DNA Replication Machinery Family AT1G08260 71.5 0.0e+00 2981.8
Cmu09g1964 . 85 1107 Core DNA Replication Machinery Family AT1G08260 76.7 0.0e+00 1671.0
Cmu02g2187 . 25 2202 Core DNA Replication Machinery Family AT2G27120 68.1 0.0e+00 2948.3
Cmu09g1964 . 107 1107 Core DNA Replication Machinery Family AT2G27120 74.7 0.0e+00 1599.3
Cmu04g1310 . 1 258 Core DNA Replication Machinery Family AT5G22110 77.5 2.9e-121 432.6
Cmu04g1309 . 638 804 Core DNA Replication Machinery Family AT5G22110 60.5 1.2e-47 188.0
Cmu02g2237 . 50 974 Core DNA Replication Machinery Family AT5G22010 63.0 1.1e-304 1042.7
Cmu10g1183 . 1 331 Core DNA Replication Machinery Family AT1G63160 91.0 3.8e-173 604.4
Cmu04g0515 . 1 354 Core DNA Replication Machinery Family AT5G27740 85.3 1.1e-178 622.9
Cmu11g1591 . 119 437 Core DNA Replication Machinery Family AT1G21690 81.6 2.1e-144 508.8
Cmu08g0537 . 1 363 Core DNA Replication Machinery Family AT1G77470 75.5 2.5e-154 542.0
Cmu11g0152 . 26 607 Core DNA Replication Machinery Family AT2G06510 67.9 6.8e-245 843.6
Cmu10g0955 . 32 703 Core DNA Replication Machinery Family AT2G06510 50.4 1.0e-195 680.2
Cmu06g1609 . 1 623 Core DNA Replication Machinery Family AT5G08020 68.3 9.9e-249 856.3
Cmu10g0955 . 10 811 Core DNA Replication Machinery Family AT5G45400 50.3 1.8e-227 786.2
Cmu06g1609 . 1 618 Core DNA Replication Machinery Family AT5G61000 66.1 7.9e-241 830.1
Cmu10g0955 . 5 797 Core DNA Replication Machinery Family AT4G19130 53.7 2.9e-224 775.4
Cmu03g2373 . 1 401 Core DNA Replication Machinery Family AT5G26680 82.8 2.3e-188 655.2
Cmu05g0297 . 1 1110 Core DNA Replication Machinery Family AT1G08840 52.3 1.2e-297 1019.6
Cmu07g1546 . 1 297 Core DNA Replication Machinery Family AT2G25100 67.0 1.3e-115 412.9
Cmu02g2147 . 2 740 Core DNA Replication Machinery Family AT1G08130 69.4 8.3e-288 986.5
Cmu02g2147 . 162 740 Core DNA Replication Machinery Family AT1G49250 69.3 2.9e-233 805.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009502 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 32