Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu02g2185 ATGTCTACTGAACCCGGTCCAACATGGCACCCAAATTTTAGGCAAATCGAGCCCTTCCAAAATGGGCCCCCACTGGGCCCAATTAGCCCCCATGACCCGGCCCAATATTTCCTCCTTCAAAAATCACTCCCTTGCCCCTGCCTCGGCTCCTCAAACGCCTTCCCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCCTCTCTCCAATGGAGTCATCTCCCGACGACATCGCCGACGACCTACAAAGCCTCAGCTTCAACTCTACCAACACCAACCGCAGCACAAGCTCCGGCTCCGAGACCACTCTCACCGCCTCCTCCTCCTCCTTTAACATCCCTTCCATTCTCAGCAAGCCCCACGCGCCTTCCTCCGACCCTTGCTGGTCCGCTGTTAACCGGATCCGATCCGAATCTTCGTCTCGTCAACTCGTCTTCTCCGACCTTAAGTTCTTCCACCGTCTTGGCTCTGGCGACATTGGCTCCGTCTACCTCTCCGGCCTCAAGTCCGCTGGAACCGACGGATGTTTGTTTGCAGCGAAGGTAATGGATAAGAAGGAACTAGCGAGTAGGAGTAAAGAAGGCAGAGCAAGGACTGAGAGAGAGATTTTGGAGTCTTTGGACCATCCGTTTCTACCGACGCTCTATGCTAGTATCGACTCGCCGAAGTGGCTCTGTCTCTTGACGGAGTTCTGTCCCGGCGGCGACCTACACGTTCTCCGGCAACGGCAACCTAACAAACGCTTCGATGAACTCGCCGTGAGATTCTATGCATCGGAGATAGTGGTTGCTATCGAGTACCTTCACATGATGGGGATTGTTTACCGTGATCTGAAGCCGGAAAATGTACTGGTACGATCGGACGGCCATATCATGCTCACTGATTTTGATCTCTCCTTGAAGTGTGAGGATTCGACGGCGACCCCACAGGTTATCAATGCTAAATATCTGACAAACGGCACCGCCCCGCTAAAGGACTACCAAATTGATGCCCCTCCTTTCACATCATCCTCCTGCATTCTTCCAAACTGTATAGTCCCGGCCGTGTCATGTTTCAACCCAAAACGCAAGCGCAAGAAGAAGTCTGGTCACCGTAACGGACCCGAGTTTGTCGCTGAACCGGTTGACGTCCGGTCAATGTCATTTGTTGGCACCCACGAGTACTTGGCCCCGGAGATCGTCTCTGGTGAGGGCCATGGAAGCGCGGTGGACTGGTGGACTCTAGGGGTGTTTGTGTTTGAGTTGTTTTATGGAGTGACACCTTTTAGAGGCATGGACAATGAGCTCACCTTGGCCAACATAGTGGCTAGAGCTCTTGAGTTCCCTAAAGAACCAGCGGTGCCAACGGCAGCGAAGGACCTCATCTCTCAGTTATTGATCAAAGACCCGGCGAGACGGTTGGGATCGACGACAGGGTCGTCGGCAATCAAGCACCATTCATTTTTTCAAGGAGTAAATTGGGCATTATTGAGATGTACGTCGCCACCATTTATTCCACCACCTTTTAGTAGAGAAAAAATTGCATCGGATGAAAGCTGCACAGAGGCTCCAAAGCCGCCTCTTTCCTGTACTTCCCATGGTACACTGTCATCCGTTCCCTGCCTTGGTGTCATCAGAGATGTCATGGATGAATTAGCCTCTCATTTTCATGTCTAG 1653 51.91 MSTEPGPTWHPNFRQIEPFQNGPPLGPISPHDPAQYFLLQKSLPCPCLGSSNAFPSSSSSSSSSSSLSPMESSPDDIADDLQSLSFNSTNTNRSTSSGSETTLTASSSSFNIPSILSKPHAPSSDPCWSAVNRIRSESSSRQLVFSDLKFFHRLGSGDIGSVYLSGLKSAGTDGCLFAAKVMDKKELASRSKEGRARTEREILESLDHPFLPTLYASIDSPKWLCLLTEFCPGGDLHVLRQRQPNKRFDELAVRFYASEIVVAIEYLHMMGIVYRDLKPENVLVRSDGHIMLTDFDLSLKCEDSTATPQVINAKYLTNGTAPLKDYQIDAPPFTSSSCILPNCIVPAVSCFNPKRKRKKKSGHRNGPEFVAEPVDVRSMSFVGTHEYLAPEIVSGEGHGSAVDWWTLGVFVFELFYGVTPFRGMDNELTLANIVARALEFPKEPAVPTAAKDLISQLLIKDPARRLGSTTGSSAIKHHSFFQGVNWALLRCTSPPFIPPPFSREKIASDESCTEAPKPPLSCTSHGTLSSVPCLGVIRDVMDELASHFHV 550
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 35495495 35500962 + CmPI595203_02g021850.1 Cmu02g2185 410234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu02g2185 550 Gene3D Transferase(Phosphotransferase) domain 1 235 306 - -
Cmu02g2185 550 Gene3D Transferase(Phosphotransferase) domain 1 377 499 - -
Cmu02g2185 550 Pfam Protein kinase domain 151 316 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu02g2185 550 Pfam Protein kinase domain 378 481 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu02g2185 550 PANTHER FLIPPASE KINASE 1-RELATED 72 502 - GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Cmu02g2185 550 ProSitePatterns Serine/Threonine protein kinases active-site signature. 272 284 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu02g2185 550 FunFam serine/threonine-protein kinase D6PK-like 235 302 - -
Cmu02g2185 550 FunFam serine/threonine-protein kinase D6PKL2 147 234 - -
Cmu02g2185 550 MobiDBLite consensus disorder prediction 57 103 - -
Cmu02g2185 550 SMART serkin_6 148 481 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu02g2185 550 ProSiteProfiles Protein kinase domain profile. 148 481 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu02g2185 550 MobiDBLite consensus disorder prediction 1 33 - -
Cmu02g2185 550 Gene3D Phosphorylase Kinase; domain 1 146 234 - -
Cmu02g2185 550 FunFam serine/threonine-protein kinase D6PK-like 376 499 - -
Cmu02g2185 550 SUPERFAMILY Protein kinase-like (PK-like) 126 512 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g2185 Cmu-Chr2:35495495 Cmu05g0012 Cmu-Chr5:161930 2.90E-114 dispersed
Cmu02g2184 Cmu-Chr2:35479174 Cmu02g2185 Cmu-Chr2:35495495 1.30E-114 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75344 PF00069 Pkinase 1.20E-34 CL0016 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu02g2185 K08286 - csv:101207262 866.685