Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu02g2187 ATGAGCGGCGAAAGCCGACGGCGAGGCCGTGCAGACAAGAGTAGTAGGTCGAAGAAGCAGAGGATAATCCGGTCAGCCGAGGAGGAGATCGAATCAAAGCTTGGATTTGATCTCTTCTCTGAAGGCGATAAGAGGCTTGGATGGCTGCTCACTTTCGCTCCTTCATCTTTGGAGGATCAGGATACTGGAAAGGTCAATAGTTGTATTGATCTTTATTTTGTGACACAGGATGGAAGCAGCTTCAAGTCAAAATATAAGTTTCGTCCTTATTTCTATGCAGCCACAAAGGATAAAATGGAAATTGATGTGGAGGCGTATTTGAGACGACGTTATGAAGGTCGAATAGCTGATATTGAGATTTTAGAAAAAGAAGACCTTGATCTTAAGAATCATCTGTCAGGATTGCGCAAGGCATATTTGAAACTATCATTTGAAACTGTTCAAGAATTGATGAATGTGAAGAGTGAACTATTGCATGTTGTTGAAAGCAACTGGGCAAAGTCTGATGCTGCAGAAGCATATGATTCTATTTTATTTGGTAAAAGGGAACAAAAGCCTCAAGATTTTCTAGAATGCATTGTTGATCTTCGAGAGTATGATGTTCCGTACCATGTTCGCTTTGCTATTGATCATGATTTACGCTGTGGACAATGGTACGATGTTAGTGTATCAAGCACTGGTGTTACACTTGAGAAGAGAAAAGATCTTCTGCAACGTGCTGAAGTTCACATATGTGCATTTGATATTGAAACCACAAAGCTACCATTGAAATTCCCAGATGCTGAATATGACATGATAATGATGATTTCCTATATGGTTGATGGACAAGGGTACTTGATTATCAACAGAGAGTGTGTTGGAGAAGATATTGAGAATTTGGAGTACACACCAAAACCAGAATATGAAGGGTTCTTTAAAGTGACCAATGTGAAAAATGAGCTAGAGCTTCTCAAACTGTGGTTTTCCCATATGCGAGAGGTCAAACCTGGTATCTATGTCACCTACAATGGTGATTTTTTTGACTGGCCATTCATTGAAAGCAGAGCAGCCTATCATGGCATTAAAATGAGTGATGAAGTAGGATTTCAATGCGACAAGAATCAGGGGGAATGCCGTTCAAAATTTGCTTGTCATTTGGATTGCTTTGCCTGGGTGAAGCGTGATAGTTATCTTCCTCAAGGTAGCCATGGTTTGAAGGCTGTCACAAAAGCTAAATTGGGTTATGATCCTCTTGAAGTGAATCCCGAGGATATGGTGCGGTTTGCAAGGGAAAAGCCTCAGATGATGGCTTCCTATTCTGTTTCAGATGCTGTTGCTACATACTACTTGTACATGACCTATGTTCATCCGTTCATTTTTTCTCTAGCAACTATTATTCCAATGTCACCAGATGAGGTGTTGCGCAAGGGAAGTGGGACACTTTGTGAAATGCTTCTAATGGTTCAGGCTTACAAGGCTAATGTTGTGTGTCCTAACAAACATCAATCAGATCCAGAGAAGTTCTACAGCAACCGGCTTCTTGAAAGTGAGACATACATTGGTGGTCACGTAGAATGCCTAGAGAGTGGTGTATTTAGATCCGATCTTCCTACCAGTTTTAGGCTTGATCCATCTGCTTATGATCAATTGATATACAATTTGGATAGAGATCTGCAATATGCCATACAAGTAGAAGGAAAGATGGACTTGGAGTCAGTGTCAAATTATAGCGATGTGAAGAATGCTATCATGGAAAAGCTTATTAGATTGCGGGACGAGCCTGTACGTGAAGAGGGCCCTCTGATATATCACCTTGATGTAGCTGCGATGTATCCTAATATTATTTTAACAAATAGACTTCAGCCATCATCAATAGTTACGGACGAGGTTTGTACTGCTTGTGATTTCAATCGTCCTGGGAAAACTTGCCTACGAAAACTTGAATGGGTTTGGCGAGGAGAGGTATTCATGGCTAAAAAAAGTGACTATTATCATCTGAAGAAGCAAATTGAGTCTGAGTTTGTTGATAGCGGTAATGTTCGGTTGTCAAAATCATTTCTTGAACTTCCAAAGTTGGAGCAGCAAGCAAAGCTCAAAGAGCGCTTAAAGAAATACTGTCAGAAGGCTTATAAACGAGTACTTGATAAGCCAGTCACTGAAGTTCGAGAAGCAGGGATCTGCATGAGAGAAAACTCCTTCTATATTGACACTGTTCGTAGTTTTCGAGATAGAAGATACGAATACAAAGGGCTCAATAAAGTATGGAAGGGAAAATTATCAGAAGCTAAAGCGAGCGGAAATTCAATCAAGATCCAGGAAGCCCAAGACATGGTAGTTCTTTATGATTCTCTACAACTTGCTCATAAATGTATCCTCAACTCCTTTTATGGATATGTGATGCGAAAGGGTGCTCGATGGTATTCAATGGAAATGGCTGGGGTAGTTACATATACAGGAGCAAAAATCATTCAGAATGCTCGTCTGTTAATTGAGAAAATTGGAAAACCGCTGGAGTTAGACACCGATGGTATTTGGTGTGCTCTACCTGGATCGTTCCCAGAGAACTTTACCTTCAAAACAAGAGATTCGAAGAAGTTGACAATTTCATATCCATGCGTTATGCTTAATGTTGATGTGGCAAGGAACAACACGAATGACCAATACCAGACGCTTATAGATCCTGTGAAGAAAACATATAAAACACACAGTGAATGCTCAATTGAATTTGAAGTAGATGGACCATATAAGGCAATGATCCTTCCTGCTTCCAAGGAAGAAGGCATTTTGATCAAAAAGAGATATGCCGTCTTCAATGATGATGGAACACTTGCTGAGCTAAAAGGCTTTGAGATCAAGCGTAGGGGGGAGTTAAAGCTCATCAAAGTTTTCCAGGCAGAACTTTTTGACAAGTTTCTTCATGGTTCCACCTTAGAAGAATGCTATTCAGTTGTTGCATCTGTTGCAAATCGATGGCTAGATCTTCTGGATAATCAAGGAAAAGATATTGCAGATAGCGAGTTGCTTGATTATATATCTGAATCAAGTACCATGAGCAAGTCTTTGGTAGACTATGGGGAGCAAAAGTCTTGTGCTGTTACCACTGCTAGACGTCTTGCAGATTTTCTTGGTGATACAATGGTCAGGGATAAAGGCCTACGTTGCCAATATATAGTTGCGTGTGAACCTAAGGGTACTCCTGTAAGTGAGCGTGCTGTTCCAGTTGCAATCTTTGAGACTGATGCAGAGATTATGAAATTTTATGTACGTAAATGGTGCAAGATTTCATCTGAAGTTGGCATCCGATCCATCATTGACTGGTCCTACTACAAGCAACGCTTAAGCTCAGCCATTCAAAAAATTATAACAATTCCAGCAGCCATGCAAAAGGTTGCAAATCCTGTTCCTAGGGTGGTCCATCCTGATTGGTTACATAAGAAAGTTCGTGAAAAGGATGATAAATTTCGCCAACAGAAAGTAGCTGATATGTTTGCATCCTCAAACAGAGTTAAATATTCAAAGAAGAATAGTGATGTTAGCTGCAGCAAACATGCTATGAATGAAGATAATTCTGAAGATTTAGAAGATTTTCAGAAGAAAACAAGTTCTACATATGGCCCCAAACCAGTTGTCCGATGTTATGATGTCAGAGGCATGAAACATTCACTTATGAGCGATAGTGAAATGAATTCCAAGATGCATGAAAATTTTAATGATGGAGGTGAGCCTTCTTCACCCTTGCATGTTGAAAACATAGACAAAAATGTAGATTACAGTGGATGGCTTGAAATGAAGAAGCGGAAATGGAAGGATACTTTGGACAAGAGGAAGAAGCAAAGGTTAGTGAGTTTAAGGACTCCACTTGCTGCTAATAATGTTACACGGGAGTTAAATGGTGCTATGAATAATAAAGAGTCTCCTAGAACAGGTGTTGGTTCATATTTTAAGAGGCATGAAGGATCTTTAACACGCTGCCATTGGCAGATTTTACAGCTTGTTCATAGTTCACTGAGTGGCCAATATTTTGCTTGGGCTGTTGTTGAAGGAGTTATGCTAAAGATCCCTATTAATGTTCCTAGAGTTTTTTACCTTAATTCTAAAGTACCTATTACAGATGAATTTGTGGGGAGGCGTGTTAATAAAATTCTTCCCCATGGAAGGCACAGTTATAACCTGTATGAGGTTGTGACTGATGAGGGTCAATATAGGACACAGAGGAATAAACTTGCAGCCCTACTTGCAGATCCAGAAGTAGAGGGAATCTATGAAAGCAAGGTACCATTGGAGTTCAAGTCCATCTTTCAAATTGGCTGTGTCTGTAAAGTTGATAAAACTGCTAAAAAGCGAAACATTCAAGACGGATGGAGTCTGGACGAACTGCAAATGAAGACTACAACAGAATGCAGTTATCTGGAAAAGTCAATCTCTTTCTTTTATGTGTATCATAGCATTTCTGAAGGAAGAGCTATCTACATTACCTTTTTTCCCTCCACAAGATCAATATCTGTGGTGGTGGTTAATCCTTACCAAAACAAAGACTTGTCATCAACTTTTCTTGAAAGGCAATATCGTGAAGCTTGTCAAATGCTGTCTGGTGAATCACAACCTCCTAAGAGTGGTATAACTTACAAGGTTGACTATGTTGTTAATGTTAAAGAAGCTGAAGTGATTTTGCAAAGATCGATAACAGAACACAGGAGCATAAACCATGGACCTATTCTAGCTGTAATTCAATGCCCAAACGTACTACGGCTAAAGTCAGATGTGAGAGTATTAGATGATTTTCCATGCGTGACCATTCCTTCTAATGCCCGTGATAACCAATATCAGGTTCTTGGTTGGCAACAAACAGCTGCAAAGATTGGAATGCAACGTTGTGCTGCATCATCCCAATGGTTGAATGAAAGAATCTCTCTTGCAAGATATGCCCATGTACCATTAGGAAATTTTGAACTTGATTGGCTAATTTTTACAGCAGATATATTTTTTTCAAGAGCATTACACGATCAACAGCAGGTACTTTGGATATCGGATGATGGTGTTCCAGATATAGGAGGCATTAACATAGAAGATGTGTGTTTCGCTGATGAGGTCCAACAACCTATTCTGACATATCCTGGAGCATATAGAAAAGTTTCTGTGGAGCTTAAGATCCATCATTTGGCTGTCAATGCTCTGCTGAAGAGCAACCAAGTGAATGAAATGGAAGGAGGTAGTTTGTTTGGCTTTGAACGTGATATGCAATGTGGGGCCCAACTTTCTAATGAAGAAGGTGGCTTCGATGAGGCTGCTTCATGTGCTCCGGCATTTCGTGTCCTGAAACAATTGATACAAAGGTGCCTTGCTGATGCAGTTACATCTGGAAATGTATATGCTGATGGAATTTTGCGGCATCTGTACAGATGGATTTGCAGCCCCCAGTCAAGACTTCACGATCCAGCTCTTCATCGTTTGCTCCACAAGGTTATGCAAAAGGTGTTTGCTCTTTTGTTGGCTGAGCTACGCAAATTAGGCGCCATCATTATATTTGCAAACTTCTCAAGAATTATTATAGACACGGGAAGGTTTGATCTCTCTTCTGCTAAAGCATACTGTGATAGCTTGCTGAAAACAGTGCAAACAAGGGATCTATTCGAGTGGATTGAGCTGGAACCATTACAGTTCTGGCACTCCCTGTTGTTTATGGATCAGTATAACTATGGTGGAATTCCGGCAAAAGATGATGAGAGCTCAGATATTGAATCTCAAGTTGATATAGTGGCCAACTGGAACATTGCTGAGTATCTACCCAAGAAGATTCAGGATCACTTTGTTTTTATCATCTCCCAGTTTTTGTATATTCCATGGAATTATGCAACCAAACAAGCTGCAGCAAGAGCATCCTTGCATCGTGAAGACACATGTACCCCATCCATTACTGTTGTAGCTGCTGAATCGTTTGAATCGCTGGTGACAGAAAATCTGAAAGAACAGCTAAGCTCTTACTTCAGTGACAAAATGTTGGGAATTGTTCGTGATATTGTTCTTCATATGAAAGGGAAGGACAAGAACACCAAGGATATTTTACCAGAACAACCTTCTGGTAATATCCAAAAAGGAGATGCTGCATTGGGATTCATTAAGCTCGTCTGCTCTGTTTTGGCTCTTGATCAAAATGTCCAACATGATGTTCTGGTAATGAGGAAAAATTTACTGAAGTTTGTGCGTGTTAGAGAGTTTGCACCAGAAGCTGAGTTTTCTAATTCCAGCCCGTCCATAATCTTACCCAACGTTATTTGCAGCTATTGTGACGATTGTCGAGATTTGGACTTGTGCCGCGACTCGGCTTTACTAGCACAGGAATGGCGCTGTGCTGTGCCACAATGTGGACAACCCTACGACCAAGAAGTGATGGAAAATGCTCTACTTCAAATCGTGCGGCAGAGGGAGCGCCTCTATCATGTGCAGGATCTGGTATGTGTACGCTGCAACCAAGTCAAAGCAGCTCATTTATCGGAACAGTGTGCTTGTGCTGGTACATATAAATGCAAAGAAGAAGCGACAGAATTCTTCAGCAAGATGCAGATTATTCTTAATGTAGCCACTCGTCAAAAGTTCCAACTATTGCAAGAGTTCACCTCGTGGATCTTGAAAGACTCATGA 6618 40.5 MSGESRRRGRADKSSRSKKQRIIRSAEEEIESKLGFDLFSEGDKRLGWLLTFAPSSLEDQDTGKVNSCIDLYFVTQDGSSFKSKYKFRPYFYAATKDKMEIDVEAYLRRRYEGRIADIEILEKEDLDLKNHLSGLRKAYLKLSFETVQELMNVKSELLHVVESNWAKSDAAEAYDSILFGKREQKPQDFLECIVDLREYDVPYHVRFAIDHDLRCGQWYDVSVSSTGVTLEKRKDLLQRAEVHICAFDIETTKLPLKFPDAEYDMIMMISYMVDGQGYLIINRECVGEDIENLEYTPKPEYEGFFKVTNVKNELELLKLWFSHMREVKPGIYVTYNGDFFDWPFIESRAAYHGIKMSDEVGFQCDKNQGECRSKFACHLDCFAWVKRDSYLPQGSHGLKAVTKAKLGYDPLEVNPEDMVRFAREKPQMMASYSVSDAVATYYLYMTYVHPFIFSLATIIPMSPDEVLRKGSGTLCEMLLMVQAYKANVVCPNKHQSDPEKFYSNRLLESETYIGGHVECLESGVFRSDLPTSFRLDPSAYDQLIYNLDRDLQYAIQVEGKMDLESVSNYSDVKNAIMEKLIRLRDEPVREEGPLIYHLDVAAMYPNIILTNRLQPSSIVTDEVCTACDFNRPGKTCLRKLEWVWRGEVFMAKKSDYYHLKKQIESEFVDSGNVRLSKSFLELPKLEQQAKLKERLKKYCQKAYKRVLDKPVTEVREAGICMRENSFYIDTVRSFRDRRYEYKGLNKVWKGKLSEAKASGNSIKIQEAQDMVVLYDSLQLAHKCILNSFYGYVMRKGARWYSMEMAGVVTYTGAKIIQNARLLIEKIGKPLELDTDGIWCALPGSFPENFTFKTRDSKKLTISYPCVMLNVDVARNNTNDQYQTLIDPVKKTYKTHSECSIEFEVDGPYKAMILPASKEEGILIKKRYAVFNDDGTLAELKGFEIKRRGELKLIKVFQAELFDKFLHGSTLEECYSVVASVANRWLDLLDNQGKDIADSELLDYISESSTMSKSLVDYGEQKSCAVTTARRLADFLGDTMVRDKGLRCQYIVACEPKGTPVSERAVPVAIFETDAEIMKFYVRKWCKISSEVGIRSIIDWSYYKQRLSSAIQKIITIPAAMQKVANPVPRVVHPDWLHKKVREKDDKFRQQKVADMFASSNRVKYSKKNSDVSCSKHAMNEDNSEDLEDFQKKTSSTYGPKPVVRCYDVRGMKHSLMSDSEMNSKMHENFNDGGEPSSPLHVENIDKNVDYSGWLEMKKRKWKDTLDKRKKQRLVSLRTPLAANNVTRELNGAMNNKESPRTGVGSYFKRHEGSLTRCHWQILQLVHSSLSGQYFAWAVVEGVMLKIPINVPRVFYLNSKVPITDEFVGRRVNKILPHGRHSYNLYEVVTDEGQYRTQRNKLAALLADPEVEGIYESKVPLEFKSIFQIGCVCKVDKTAKKRNIQDGWSLDELQMKTTTECSYLEKSISFFYVYHSISEGRAIYITFFPSTRSISVVVVNPYQNKDLSSTFLERQYREACQMLSGESQPPKSGITYKVDYVVNVKEAEVILQRSITEHRSINHGPILAVIQCPNVLRLKSDVRVLDDFPCVTIPSNARDNQYQVLGWQQTAAKIGMQRCAASSQWLNERISLARYAHVPLGNFELDWLIFTADIFFSRALHDQQQVLWISDDGVPDIGGINIEDVCFADEVQQPILTYPGAYRKVSVELKIHHLAVNALLKSNQVNEMEGGSLFGFERDMQCGAQLSNEEGGFDEAASCAPAFRVLKQLIQRCLADAVTSGNVYADGILRHLYRWICSPQSRLHDPALHRLLHKVMQKVFALLLAELRKLGAIIIFANFSRIIIDTGRFDLSSAKAYCDSLLKTVQTRDLFEWIELEPLQFWHSLLFMDQYNYGGIPAKDDESSDIESQVDIVANWNIAEYLPKKIQDHFVFIISQFLYIPWNYATKQAAARASLHREDTCTPSITVVAAESFESLVTENLKEQLSSYFSDKMLGIVRDIVLHMKGKDKNTKDILPEQPSGNIQKGDAALGFIKLVCSVLALDQNVQHDVLVMRKNLLKFVRVREFAPEAEFSNSSPSIILPNVICSYCDDCRDLDLCRDSALLAQEWRCAVPQCGQPYDQEVMENALLQIVRQRERLYHVQDLVCVRCNQVKAAHLSEQCACAGTYKCKEEATEFFSKMQIILNVATRQKFQLLQEFTSWILKDS 2205
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 35504225 35533311 + CmPI595203_02g021870.1 Cmu02g2187 410236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu02g2187 2205 FunFam DNA polymerase epsilon catalytic subunit 757 937 - -
Cmu02g2187 2205 Gene3D Palm domain of DNA polymerase 753 937 IPR023211 -
Cmu02g2187 2205 Pfam Domain of unknown function (DUF1744) 1523 1895 IPR013697 GO:0003887(InterPro)|GO:0005634(InterPro)|GO:0006260(InterPro)|GO:0008270(InterPro)
Cmu02g2187 2205 Gene3D DNA Polymerase, chain B, domain 1 57 234 - -
Cmu02g2187 2205 FunFam DNA polymerase epsilon catalytic subunit 241 469 - -
Cmu02g2187 2205 SMART polmehr3 240 843 IPR006172 GO:0000166(InterPro)|GO:0003676(InterPro)|GO:0003887(InterPro)
Cmu02g2187 2205 CDD POLBc_epsilon 504 1122 - -
Cmu02g2187 2205 Pfam DNA polymerase epsilon catalytic subunit A, thumb domain 946 1121 - -
Cmu02g2187 2205 Gene3D - 941 1125 IPR042087 -
Cmu02g2187 2205 CDD DNA_polB_epsilon_exo 241 445 - -
Cmu02g2187 2205 SMART DUF1744_2 1510 1895 IPR013697 GO:0003887(InterPro)|GO:0005634(InterPro)|GO:0006260(InterPro)|GO:0008270(InterPro)
Cmu02g2187 2205 SUPERFAMILY DNA/RNA polymerases 487 1115 IPR043502 -
Cmu02g2187 2205 FunFam DNA polymerase epsilon catalytic subunit 57 228 - -
Cmu02g2187 2205 Pfam DNA polymerase family B, exonuclease domain 195 401 IPR006133 -
Cmu02g2187 2205 Gene3D - 239 469 IPR036397 GO:0003676(InterPro)
Cmu02g2187 2205 FunFam DNA polymerase epsilon catalytic subunit 941 1125 - -
Cmu02g2187 2205 PANTHER DNA POLYMERASE EPSILON CATALYTIC SUBUNIT A 6 2174 IPR029703 GO:0000278(PANTHER)|GO:0003677(InterPro)|GO:0003677(PANTHER)|GO:0003887(PANTHER)|GO:0003887(InterPro)|GO:0006260(InterPro)|GO:0006272(PANTHER)|GO:0006281(InterPro)|GO:0006287(PANTHER)|GO:0006297(PANTHER)|GO:0008310(PANTHER)|GO:0008622(PANTHER)|GO:0008622(InterPro)|GO:0045004(PANTHER)
Cmu02g2187 2205 Pfam Zinc finger domain of DNA polymerase-epsilon 2140 2202 IPR054475 -
Cmu02g2187 2205 MobiDBLite consensus disorder prediction 1 23 - -
Cmu02g2187 2205 SUPERFAMILY Ribonuclease H-like 60 468 IPR012337 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g2187 Cmu-Chr2:35504225 Cmu09g1964 Cmu-Chr9:35704017 0.00E+00 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu02g2187 K02324 - csv:101208568 4226.78