Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu02g2197 ATGGAAAAGCTCAAACAAGAAGGAGAGAACAGACCCCATCAAAGATTAAAAGTTGCAGTCCCCAAAGACAGAAGATTATTTGTTGAAGTCATAATACAAATTCAGAACAACAACAACAACAATGGTTTAAAGAAGGTTTTTTTTTTTTTAATGGGGAGCCAAAGAGTTGAAGAAACTGGTCCTTCATCCCACTATCATCATCACCTTCCATATAATTCACTTCTTTATGGAATCAACAACAATAATCTTTCCTCCACTTTGATCAATCACGATGGACAATCTTTTGATTTTGGAGAATTGGAACAAGCAATTGTGCTACAAGGACTCGGAACCAAGAACAAACTCGATCATCACGAACCTAAACAAAGCTTTTTCTCAGGCAAGCCTGCAGCAACTCTGGAAATGTTTCCTTCTTGGCCAATCAAACACCAACAAACTTCAAGAGGAATTAGTTTGAGAAGAAGAGAAGAGAGCAGTGATGAGTCAGGAGCAGCTGTGAACACTCATACAATAAACAAATCTAATAATCAAGAAGGGCATTTGGAATTGGAAATAGAAAAAGAAGAATCTGAGATGAGTAAAAAGGGTTGTTGTTCATCTTCTTCTTCAGGTCAAGATCAGAGCTTTATTCAAAAGCATCTACAGCAGATTCAACCTGAAATGATACTCAGTGATATTTCAACAACTGCACTTTCATCTCAACATCAATCCCTTCAACAAAAGAGAAAAGGATGTGGTTCCATTTCAACATCACAGAAACAACTTGACGCTAAGACATTGAGACGTTTAGCTCAGAACAGAGAGGCTGCGAGGAAGAGTCGACTAAGGAAAAAGGCTTACGTACAGCAACTCGAGAGCAGTAGAATCAAGCTTACGCAGCTTGAGCAGGACCTTCAACGGGCACGATCTCAGGGTTTGTTTTTAGGTGCCGGCGGTACTGGCGGCGGCATTGTCAGCCCCGCTAGTGCAATTTTTGATATGGAATATGTAAGGTGGTTGGAAGAGGACCATCGACATACAGTGGAGCTGCGTGGGGGACTAGAGGCACATCTGCCTGACGTGGATTTGAGAGTGAGAGTAGATGCATGCATTTGCCATTACAACGAAATTTTTCGACTCAAAGGAGAGGCTGCTAAGTCCGACATCTTCCATCTCATCACCGGAATCTGGATGTCTCCGGCGGAGCGTTGTTTCCTCTGGATCGGTGGATTTCGACCCTCCGATCTCATCAAGATGTTAATGTCACAATTGGATCCAATAACAGAACAACAAGTGATGGAGATTTACAAGCTACAACATTCGTCACAACAAGCTGAAGATGCTTTATCTCAAGGACTTGATCAGCTCCATCGGTCTTTGACCGACATCATCGCCGGCGGTCCGATCATCGACGGCATCAACCACATGGTTTTGGCCATGGACAAGCTCTCTAGTCTCCAAGGCTTTCTCCATCAGGCAGATATTTTAAGACAACAAACGCTTCATCGACTATGTAGGATACTCACGGTTCGACAAGCGGCCAAATGTTTTCTAATCATTGGTGAATATTACAGTAGATTACGAGCTCTAAGCTCCCTATGGTCCTCTCGTCCAAAGGAGGATGAAGATAATTCAAGCCAAACAACTCGTTACGAAGATCTTGACTACACTCCCCCCTTGGCGGAAATTCTTGCTATTCAGGAGAGCATTAGATTTGCGCGTGCTCAGAATGTACCAAATTTAATTGTGGAATCTGACTACTTACAAGCAATCAATCTAATCAATTCTGAAGAAGATGAGTTTAGAGGGGCGGACTGTTGGCTGGAAGAGATCAGAAGCTTGAGAGATTTCTTCTCATCCATCGTTTTCAAATTTTGTAATCGAAGTTATAATGGCTTGACTGATAGAATAGCAAAAAATGCTAGGAACTGTAGTCTCAATATGGATTGGTTTTCTGACTTTCCATCCTGGATTGTTAGCCAACTCAGAAAAGATGATCATATCGGTTTTGCCCAAGTGGCGGATAAATAA 2010 41.99 MEKLKQEGENRPHQRLKVAVPKDRRLFVEVIIQIQNNNNNNGLKKVFFFLMGSQRVEETGPSSHYHHHLPYNSLLYGINNNNLSSTLINHDGQSFDFGELEQAIVLQGLGTKNKLDHHEPKQSFFSGKPAATLEMFPSWPIKHQQTSRGISLRRREESSDESGAAVNTHTINKSNNQEGHLELEIEKEESEMSKKGCCSSSSSGQDQSFIQKHLQQIQPEMILSDISTTALSSQHQSLQQKRKGCGSISTSQKQLDAKTLRRLAQNREAARKSRLRKKAYVQQLESSRIKLTQLEQDLQRARSQGLFLGAGGTGGGIVSPASAIFDMEYVRWLEEDHRHTVELRGGLEAHLPDVDLRVRVDACICHYNEIFRLKGEAAKSDIFHLITGIWMSPAERCFLWIGGFRPSDLIKMLMSQLDPITEQQVMEIYKLQHSSQQAEDALSQGLDQLHRSLTDIIAGGPIIDGINHMVLAMDKLSSLQGFLHQADILRQQTLHRLCRILTVRQAAKCFLIIGEYYSRLRALSSLWSSRPKEDEDNSSQTTRYEDLDYTPPLAEILAIQESIRFARAQNVPNLIVESDYLQAINLINSEEDEFRGADCWLEEIRSLRDFFSSIVFKFCNRSYNGLTDRIAKNARNCSLNMDWFSDFPSWIVSQLRKDDHIGFAQVADK 669
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 35617709 35627089 + CmPI595203_02g021970.1 Cmu02g2197 410246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu02g2197 669 Pfam Seed dormancy control 341 415 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Cmu02g2197 669 Coils Coil 171 191 - -
Cmu02g2197 669 CDD bZIP_HBP1b-like 258 304 - -
Cmu02g2197 669 Pfam bZIP transcription factor 257 299 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu02g2197 669 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 261 276 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu02g2197 669 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 256 300 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu02g2197 669 ProSiteProfiles DOG1 domain profile. 322 530 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Cmu02g2197 669 MobiDBLite consensus disorder prediction 144 209 - -
Cmu02g2197 669 Coils Coil 277 304 - -
Cmu02g2197 669 CDD RNase_H_like 549 632 IPR044730 -
Cmu02g2197 669 PANTHER TRANSCRIPTION FACTOR TGA9 198 533 - -
Cmu02g2197 669 SMART brlzneu 254 331 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu02g2197 669 MobiDBLite consensus disorder prediction 163 178 - -
Cmu02g2197 669 MobiDBLite consensus disorder prediction 179 194 - -
Cmu02g2197 669 Gene3D - 257 306 - -
Cmu02g2197 669 Pfam Reverse transcriptase-like 550 634 IPR002156 GO:0003676(InterPro)|GO:0004523(InterPro)
Cmu02g2197 669 SUPERFAMILY Ribonuclease H-like 549 643 IPR012337 -
Cmu02g2197 669 MobiDBLite consensus disorder prediction 195 209 - -
Cmu02g2197 669 Gene3D - 526 636 IPR036397 GO:0003676(InterPro)
Cmu02g2197 669 FunFam BZIP family transcription factor 257 306 - -
Cmu02g2197 669 SUPERFAMILY Leucine zipper domain 258 301 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g0827 Cmu-Chr1:9712964 Cmu02g2197 Cmu-Chr2:35617709 1.40E-26 dispersed
Cmu01g1177 Cmu-Chr1:21551763 Cmu02g2197 Cmu-Chr2:35617709 2.20E-142 dispersed
Cmu02g2197 Cmu-Chr2:35617709 Cmu10g2471 Cmu-Chr10:31315563 6.10E-90 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5837 PF13456 RVT_3 1.70E-10 CL0219 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu02g2197 K14431 - csv:101223216 635.95