Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmu02g2197 | ATGGAAAAGCTCAAACAAGAAGGAGAGAACAGACCCCATCAAAGATTAAAAGTTGCAGTCCCCAAAGACAGAAGATTATTTGTTGAAGTCATAATACAAATTCAGAACAACAACAACAACAATGGTTTAAAGAAGGTTTTTTTTTTTTTAATGGGGAGCCAAAGAGTTGAAGAAACTGGTCCTTCATCCCACTATCATCATCACCTTCCATATAATTCACTTCTTTATGGAATCAACAACAATAATCTTTCCTCCACTTTGATCAATCACGATGGACAATCTTTTGATTTTGGAGAATTGGAACAAGCAATTGTGCTACAAGGACTCGGAACCAAGAACAAACTCGATCATCACGAACCTAAACAAAGCTTTTTCTCAGGCAAGCCTGCAGCAACTCTGGAAATGTTTCCTTCTTGGCCAATCAAACACCAACAAACTTCAAGAGGAATTAGTTTGAGAAGAAGAGAAGAGAGCAGTGATGAGTCAGGAGCAGCTGTGAACACTCATACAATAAACAAATCTAATAATCAAGAAGGGCATTTGGAATTGGAAATAGAAAAAGAAGAATCTGAGATGAGTAAAAAGGGTTGTTGTTCATCTTCTTCTTCAGGTCAAGATCAGAGCTTTATTCAAAAGCATCTACAGCAGATTCAACCTGAAATGATACTCAGTGATATTTCAACAACTGCACTTTCATCTCAACATCAATCCCTTCAACAAAAGAGAAAAGGATGTGGTTCCATTTCAACATCACAGAAACAACTTGACGCTAAGACATTGAGACGTTTAGCTCAGAACAGAGAGGCTGCGAGGAAGAGTCGACTAAGGAAAAAGGCTTACGTACAGCAACTCGAGAGCAGTAGAATCAAGCTTACGCAGCTTGAGCAGGACCTTCAACGGGCACGATCTCAGGGTTTGTTTTTAGGTGCCGGCGGTACTGGCGGCGGCATTGTCAGCCCCGCTAGTGCAATTTTTGATATGGAATATGTAAGGTGGTTGGAAGAGGACCATCGACATACAGTGGAGCTGCGTGGGGGACTAGAGGCACATCTGCCTGACGTGGATTTGAGAGTGAGAGTAGATGCATGCATTTGCCATTACAACGAAATTTTTCGACTCAAAGGAGAGGCTGCTAAGTCCGACATCTTCCATCTCATCACCGGAATCTGGATGTCTCCGGCGGAGCGTTGTTTCCTCTGGATCGGTGGATTTCGACCCTCCGATCTCATCAAGATGTTAATGTCACAATTGGATCCAATAACAGAACAACAAGTGATGGAGATTTACAAGCTACAACATTCGTCACAACAAGCTGAAGATGCTTTATCTCAAGGACTTGATCAGCTCCATCGGTCTTTGACCGACATCATCGCCGGCGGTCCGATCATCGACGGCATCAACCACATGGTTTTGGCCATGGACAAGCTCTCTAGTCTCCAAGGCTTTCTCCATCAGGCAGATATTTTAAGACAACAAACGCTTCATCGACTATGTAGGATACTCACGGTTCGACAAGCGGCCAAATGTTTTCTAATCATTGGTGAATATTACAGTAGATTACGAGCTCTAAGCTCCCTATGGTCCTCTCGTCCAAAGGAGGATGAAGATAATTCAAGCCAAACAACTCGTTACGAAGATCTTGACTACACTCCCCCCTTGGCGGAAATTCTTGCTATTCAGGAGAGCATTAGATTTGCGCGTGCTCAGAATGTACCAAATTTAATTGTGGAATCTGACTACTTACAAGCAATCAATCTAATCAATTCTGAAGAAGATGAGTTTAGAGGGGCGGACTGTTGGCTGGAAGAGATCAGAAGCTTGAGAGATTTCTTCTCATCCATCGTTTTCAAATTTTGTAATCGAAGTTATAATGGCTTGACTGATAGAATAGCAAAAAATGCTAGGAACTGTAGTCTCAATATGGATTGGTTTTCTGACTTTCCATCCTGGATTGTTAGCCAACTCAGAAAAGATGATCATATCGGTTTTGCCCAAGTGGCGGATAAATAA | 2010 | 41.99 | MEKLKQEGENRPHQRLKVAVPKDRRLFVEVIIQIQNNNNNNGLKKVFFFLMGSQRVEETGPSSHYHHHLPYNSLLYGINNNNLSSTLINHDGQSFDFGELEQAIVLQGLGTKNKLDHHEPKQSFFSGKPAATLEMFPSWPIKHQQTSRGISLRRREESSDESGAAVNTHTINKSNNQEGHLELEIEKEESEMSKKGCCSSSSSGQDQSFIQKHLQQIQPEMILSDISTTALSSQHQSLQQKRKGCGSISTSQKQLDAKTLRRLAQNREAARKSRLRKKAYVQQLESSRIKLTQLEQDLQRARSQGLFLGAGGTGGGIVSPASAIFDMEYVRWLEEDHRHTVELRGGLEAHLPDVDLRVRVDACICHYNEIFRLKGEAAKSDIFHLITGIWMSPAERCFLWIGGFRPSDLIKMLMSQLDPITEQQVMEIYKLQHSSQQAEDALSQGLDQLHRSLTDIIAGGPIIDGINHMVLAMDKLSSLQGFLHQADILRQQTLHRLCRILTVRQAAKCFLIIGEYYSRLRALSSLWSSRPKEDEDNSSQTTRYEDLDYTPPLAEILAIQESIRFARAQNVPNLIVESDYLQAINLINSEEDEFRGADCWLEEIRSLRDFFSSIVFKFCNRSYNGLTDRIAKNARNCSLNMDWFSDFPSWIVSQLRKDDHIGFAQVADK | 669 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 35617709 | 35627089 | + | CmPI595203_02g021970.1 | Cmu02g2197 | 410246 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmu02g2197 | 669 | Pfam | Seed dormancy control | 341 | 415 | IPR025422 | GO:0006351(InterPro)|GO:0043565(InterPro) | |
Cmu02g2197 | 669 | Coils | Coil | 171 | 191 | - | - | |
Cmu02g2197 | 669 | CDD | bZIP_HBP1b-like | 258 | 304 | - | - | |
Cmu02g2197 | 669 | Pfam | bZIP transcription factor | 257 | 299 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cmu02g2197 | 669 | ProSitePatterns | Basic-leucine zipper (bZIP) domain signature. | 261 | 276 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cmu02g2197 | 669 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 256 | 300 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cmu02g2197 | 669 | ProSiteProfiles | DOG1 domain profile. | 322 | 530 | IPR025422 | GO:0006351(InterPro)|GO:0043565(InterPro) | |
Cmu02g2197 | 669 | MobiDBLite | consensus disorder prediction | 144 | 209 | - | - | |
Cmu02g2197 | 669 | Coils | Coil | 277 | 304 | - | - | |
Cmu02g2197 | 669 | CDD | RNase_H_like | 549 | 632 | IPR044730 | - | |
Cmu02g2197 | 669 | PANTHER | TRANSCRIPTION FACTOR TGA9 | 198 | 533 | - | - | |
Cmu02g2197 | 669 | SMART | brlzneu | 254 | 331 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cmu02g2197 | 669 | MobiDBLite | consensus disorder prediction | 163 | 178 | - | - | |
Cmu02g2197 | 669 | MobiDBLite | consensus disorder prediction | 179 | 194 | - | - | |
Cmu02g2197 | 669 | Gene3D | - | 257 | 306 | - | - | |
Cmu02g2197 | 669 | Pfam | Reverse transcriptase-like | 550 | 634 | IPR002156 | GO:0003676(InterPro)|GO:0004523(InterPro) | |
Cmu02g2197 | 669 | SUPERFAMILY | Ribonuclease H-like | 549 | 643 | IPR012337 | - | |
Cmu02g2197 | 669 | MobiDBLite | consensus disorder prediction | 195 | 209 | - | - | |
Cmu02g2197 | 669 | Gene3D | - | 526 | 636 | IPR036397 | GO:0003676(InterPro) | |
Cmu02g2197 | 669 | FunFam | BZIP family transcription factor | 257 | 306 | - | - | |
Cmu02g2197 | 669 | SUPERFAMILY | Leucine zipper domain | 258 | 301 | IPR046347 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmu01g0827 | Cmu-Chr1:9712964 | Cmu02g2197 | Cmu-Chr2:35617709 | 1.40E-26 | dispersed | |
Cmu01g1177 | Cmu-Chr1:21551763 | Cmu02g2197 | Cmu-Chr2:35617709 | 2.20E-142 | dispersed | |
Cmu02g2197 | Cmu-Chr2:35617709 | Cmu10g2471 | Cmu-Chr10:31315563 | 6.10E-90 | dispersed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
5837 | PF13456 | RVT_3 | 1.70E-10 | CL0219 | Cmu | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmu02g2197 | K14431 | - | csv:101223216 | 635.95 |