Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu02g2221 ATGTCGGGTTCTCGAGCTCCTAACTCCTCTGGACACCTGCCTGAGCAGATCATGCACTCTCTTAAGCGCCAACTCCCTTTCTCTTCTATGAAACCACCATTTGCATCTCCTGGGGACTATCACCGCTTTGCCCCGGACCCTCGACTTTCCGATCAAGAACCTGACGCCATCGTAGTCAAATCTCCACAATTGAAGAGGAAGAGTGAGGTAGCAGATTATGAAGCTGAGTCAATTGATAGAGCTGCCGGTCCTAGATTTACTGAGGTTGTTAACAGTCCCCATCAAACACCTGTATCTGTCAAAGGAGGAAAGGGAAGCAAATCAAGGCTTACCAAATGCAGTAGATCAGGGCCACAGACTCCCATGTCAAATTTTGGTTCACCTTCTACAAACAATCTTACTCCAGCTGGTCCATGCCGTTATGATAGTTCTCTTGGTCTCTTGACAAAGAAGTTCATTAATCTGATTAAACAAGCGGAAGATGGTATTCTTGATCTAAATAAAGCAGCTGACACGTTGGAGGTACAAAAAAGACGAATATATGATATAACAAATGTCCTCGAGGGAATTGGTCTCATAGAAAAGAAGCTTAAAAACAGAATTCAGTGGAAGGGGCTTGATGTCTCAAGGTCAGGGGATGTCGATGACAATTATGCTGGTCTACAGGCAGAAGTAGAGAACCTTACCGTGGAGGAGCGTGGAATAGACGAACAAATAAGAGAGATGCAGGAAAGATTAAGGGACCTCAGTGAAGATGAGAACAACCAAAGGTGGCTTTTTGTAACCGAGGAAGACATCAAGGGTTTGCCCTGTTTCCAGAATGAAACTCTCATAGCTATTAAAGCTCCCCATGGAACCACTTTAGAAGTTCCAGATCCTGATGAGGCTGTTGACTACCCCCAAAGGAGGTACAGGATAGTACTCAGAAGCACCATGGGCCCCATTGATGTTTACCTTGTTAGTCAGTTTGAAGCGAAGTTTGAGGAGATAAATGCTGTGGAAGTGCCCCCAAGCTTGCCGTCAAGTTCAGGATTGAATGAAGCACCTGCAACAACGATAGTAACAGAGGATACCAGGGGAAAGGAAGTTGAAACACGGGAGCAAGATGTACACAGAATGTGCTCCGATCTAAACGCTTCACAGGACTTCGTGGGTGGAATTATGAAAATTGTTCCCTCTGTTGTAGATAGTGATGCTGATTACTGGCTCTTGTCTGATGCTGATGTTAGTATCACAGACATGTGGAGAACTGAACCTGGCGTTGAGTGGAATGAATTGGGTACATTTCATGAAGATTATAGTATTGGCAATGTCAGCTCACCCCAAACCCAGACTCCACTTCCCGATGATGCACCTGATATGCCTTCTACCAATCCTTCTAGCAGCTGA 1389 45.14 MSGSRAPNSSGHLPEQIMHSLKRQLPFSSMKPPFASPGDYHRFAPDPRLSDQEPDAIVVKSPQLKRKSEVADYEAESIDRAAGPRFTEVVNSPHQTPVSVKGGKGSKSRLTKCSRSGPQTPMSNFGSPSTNNLTPAGPCRYDSSLGLLTKKFINLIKQAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKGLDVSRSGDVDDNYAGLQAEVENLTVEERGIDEQIREMQERLRDLSEDENNQRWLFVTEEDIKGLPCFQNETLIAIKAPHGTTLEVPDPDEAVDYPQRRYRIVLRSTMGPIDVYLVSQFEAKFEEINAVEVPPSLPSSSGLNEAPATTIVTEDTRGKEVETREQDVHRMCSDLNASQDFVGGIMKIVPSVVDSDADYWLLSDADVSITDMWRTEPGVEWNELGTFHEDYSIGNVSSPQTQTPLPDDAPDMPSTNPSSS 462
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 35789473 35795915 - CmPI595203_02g022210.1 Cmu02g2221 410270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu02g2221 462 CDD E2F_DD 216 322 IPR032198 GO:0046983(InterPro)
Cmu02g2221 462 MobiDBLite consensus disorder prediction 1 53 - -
Cmu02g2221 462 MobiDBLite consensus disorder prediction 90 135 - -
Cmu02g2221 462 Pfam E2F/DP family winged-helix DNA-binding domain 142 205 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Cmu02g2221 462 SMART E2F_TDP_2 140 205 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Cmu02g2221 462 SUPERFAMILY Winged helix DNA-binding domain 140 203 IPR036390 -
Cmu02g2221 462 MobiDBLite consensus disorder prediction 109 135 - -
Cmu02g2221 462 Gene3D - 212 322 - -
Cmu02g2221 462 Coils Coil 225 252 - -
Cmu02g2221 462 PANTHER TRANSCRIPTION FACTOR E2F 31 417 IPR015633 GO:0000978(InterPro)|GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(InterPro)|GO:0006357(PANTHER)|GO:0090575(PANTHER)
Cmu02g2221 462 MobiDBLite consensus disorder prediction 1 15 - -
Cmu02g2221 462 SUPERFAMILY E2F-DP heterodimerization region 217 322 IPR037241 -
Cmu02g2221 462 Gene3D - 134 207 IPR036388 -
Cmu02g2221 462 MobiDBLite consensus disorder prediction 434 462 - -
Cmu02g2221 462 Pfam E2F transcription factor CC-MB domain 221 321 IPR032198 GO:0046983(InterPro)
Cmu02g2221 462 FunFam E2F transcription factor 1 134 207 - -
Cmu02g2221 462 Coils Coil 156 176 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g1380 Cmu-Chr1:27286958 Cmu02g2221 Cmu-Chr2:35789473 4.70E-09 dispersed
Cmu02g2221 Cmu-Chr2:35789473 Cmu08g1381 Cmu-Chr8:25964876 1.60E-57 dispersed
Cmu02g2221 Cmu-Chr2:35789473 Cmu04g1074 Cmu-Chr4:25297633 7.80E-137 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5842 PF16421 E2F_CC-MB 1.40E-34 No_clan Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu02g2221 K06620 - csv:101219318 891.723