Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu02g2226 ATGGCGACGTACTTTCACGGTGGTTCAGAAATCCAAGCGAATTCTGACGGAATTCATACTCTTTACCTTATGAACCCAAATTACGTACCTTACTCTGACACCCACTCTCAAACGCCTCCCAATATGCTCTTTCTCAACTCTTCTTCAACTCACGCGCTTAACCCTTCAACTCTTCCTCACGCGCCGCCTTCCAACAACCACTTCGTCGGAATTCCCCTCCCGACCACCGACAATCCTCGTCCATCCTACCACGAAATCTCAACCCTCCATCCGATGCCACCTCACCGCCTCCACTACAATCTATGGGCTCCTATGGACCAACAACCCCATCACGGAATTTCCGGCGATTCCGCCGATTTGACCTTCCGCCGCCCCACCACACAACAAGGTTTGTCCTTAAGCCTCTCCTCCCAACAATCGCTTTACCGGACACTCTCGGCCGAGCAGGAGATTCAAGGCGGCGGCGGCGGTGCTCCAAGTGGGGAGGAAATTCGGGTGTCGGGAAATTCACCGACGTCGGTGTCGGTGGTGTCGAGTGGAATAACGGGCGTTCAAAGCGTGATATTGGGGTCTAAGTACTTGAAAGCGGCTCAAGAACTTTTGGATGAAGTGGTTCATGTTGGCAAAGGAAATTTTAAATCCGACAAAGGGGATGGGACAAAGGACAAGATGAAGATGAAGAAAGAATCCATGGCTACGATTGGTGGAGACCCTTCCGCCTCCGTCGGCGGTGGTGAAAGTACTTCCAAGCCTGTTGCTGAGCTCAGCACTGCTCAAAGACAGGACCTTCAGATGAAAAAAGCCAAGCTCATTGGCATGCTTGATGAGGTGGAGCAGAAGTACAGACAATATCATCAACAAATGCAAGGAGTGGTGAGTTGTTTTGAGCAGGCAGCAGGTTTGGGGTCAGCCAAATCTTACGCTTCACTCGCACTTGAAACAATTTCAAAGCAATTCCGGTGCTTAAAAGATGCAATTTGTGCACAAATAAAAGCGACAGGGAAAAGCTTAGGAGAAGAAGAAAATTGGTTGGGTTCAAAAATTGAAGGGTCTTCAAGATTGAGATACGTTGATCATCATTTAAGGCAGCAAAGAGCTTTGCAACAATTGGGAATGATTCAACACAATACTTGGAGACCACAAAGAGGTTTGCCTGAACGTGCTGTTTCTGTTCTTCGTGCTTGGCTCTTTGAGCATTTCCTTCATCCCTATCCCAAAGATTCAGACAAGATTATTCTCGCCAAACAAACCGGACTCACAAGGAGCCAAGTATCGAATTGGTTTATAAATGCAAGAGTTCGTCTATGGAAGCCAATGGTTGAAGAAATGTACTTGGAGGAAATCAAAAAGACATGA 1356 47.64 MATYFHGGSEIQANSDGIHTLYLMNPNYVPYSDTHSQTPPNMLFLNSSSTHALNPSTLPHAPPSNNHFVGIPLPTTDNPRPSYHEISTLHPMPPHRLHYNLWAPMDQQPHHGISGDSADLTFRRPTTQQGLSLSLSSQQSLYRTLSAEQEIQGGGGGAPSGEEIRVSGNSPTSVSVVSSGITGVQSVILGSKYLKAAQELLDEVVHVGKGNFKSDKGDGTKDKMKMKKESMATIGGDPSASVGGGESTSKPVAELSTAQRQDLQMKKAKLIGMLDEVEQKYRQYHQQMQGVVSCFEQAAGLGSAKSYASLALETISKQFRCLKDAICAQIKATGKSLGEEENWLGSKIEGSSRLRYVDHHLRQQRALQQLGMIQHNTWRPQRGLPERAVSVLRAWLFEHFLHPYPKDSDKIILAKQTGLTRSQVSNWFINARVRLWKPMVEEMYLEEIKKT 451
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 35851762 35854435 + CmPI595203_02g022260.1 Cmu02g2226 410275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu02g2226 451 Gene3D - 373 450 - -
Cmu02g2226 451 Pfam Associated with HOX 187 326 IPR006563 -
Cmu02g2226 451 Pfam Homeobox KN domain 395 434 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Cmu02g2226 451 FunFam BEL1-like homeodomain protein 9 381 443 - -
Cmu02g2226 451 ProSiteProfiles 'Homeobox' domain profile. 375 438 IPR001356 GO:0003677(InterPro)
Cmu02g2226 451 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 124 448 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cmu02g2226 451 SUPERFAMILY Homeodomain-like 379 444 IPR009057 -
Cmu02g2226 451 Coils Coil 260 287 - -
Cmu02g2226 451 MobiDBLite consensus disorder prediction 149 172 - -
Cmu02g2226 451 MobiDBLite consensus disorder prediction 211 260 - -
Cmu02g2226 451 SMART HOX_1 378 442 IPR001356 GO:0003677(InterPro)
Cmu02g2226 451 CDD homeodomain 378 439 IPR001356 GO:0003677(InterPro)
Cmu02g2226 451 MobiDBLite consensus disorder prediction 242 260 - -
Cmu02g2226 451 MobiDBLite consensus disorder prediction 211 230 - -
Cmu02g2226 451 SMART prehox3 182 328 IPR006563 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g2226 Cmu-Chr2:35851762 Cmu11g0411 Cmu-Chr11:4532079 2.70E-81 dispersed
Cmu01g1578 Cmu-Chr1:29413807 Cmu02g2226 Cmu-Chr2:35851762 4.00E-68 transposed
Cmu02g1296 Cmu-Chr2:26246206 Cmu02g2226 Cmu-Chr2:35851762 2.00E-69 transposed
Cmu10g2559 Cmu-Chr10:32387093 Cmu02g2226 Cmu-Chr2:35851762 1.30E-127 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5843 PF07526 POX 1.30E-46 No_clan Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu02g2226 - - - 0.0