Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu02g2236 ATGTCACTGGACATGATGGCATCAGAACGTGTTTGTTATGTTCACTGCAACTTCTGCAACACCATTTTAGCGGTAAGTGTTCCATGCAACAGCATGTTCACACTTGTGACTGTGAGATGTGGCCATTGTTCAAATCTGTTGTCTGTAAACATGGGAGCTTCTCTTCAAGTTGTTCCTCCTCAAGATTCCCAACAGGGTCATAAACAGCAGCAGGTGAATGCTGGGGATTCAAGTAAGGACAGAGCTTCTTCTTCTTCTTCTTCTTCTTCTAAATGCACTAAAATTGGCTCTCTTGATTCTGCTGAACGTGACCAACATAGAATCCCTCCTATTCGCCCACCAGAGAAAAGACAGCGAGTTCCTTCGGCGTATAATAGGTTCATCAAAGAGGAAATCCAAAGGATTAAGGCTAAGAATCCTGACATAAGCCACAGAGAAGCCTTTAGCACAGCAGCTAAAAATTGGGCACATTTTCCTCATATTCACTTTGGGCTGAAGCTGGATGGAAATAAGCAAACAAAATAA 525 42.67 MSLDMMASERVCYVHCNFCNTILAVSVPCNSMFTLVTVRCGHCSNLLSVNMGASLQVVPPQDSQQGHKQQQVNAGDSSKDRASSSSSSSSKCTKIGSLDSAERDQHRIPPIRPPEKRQRVPSAYNRFIKEEIQRIKAKNPDISHREAFSTAAKNWAHFPHIHFGLKLDGNKQTK 174
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 35963406 35969345 - CmPI595203_02g022360.1 Cmu02g2236 410285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu02g2236 174 SUPERFAMILY HMG-box 110 158 IPR036910 -
Cmu02g2236 174 Gene3D High mobility group box domain 110 161 IPR036910 -
Cmu02g2236 174 PANTHER PROTEIN YABBY 6-RELATED 6 172 IPR006780 GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0010158(PANTHER)|GO:0045165(PANTHER)
Cmu02g2236 174 FunFam axial regulator YABBY 5-like 103 161 - -
Cmu02g2236 174 MobiDBLite consensus disorder prediction 58 96 - -
Cmu02g2236 174 CDD HMG-box_SF 119 155 - -
Cmu02g2236 174 MobiDBLite consensus disorder prediction 58 121 - -
Cmu02g2236 174 Pfam YABBY protein 7 165 IPR006780 GO:0007275(InterPro)
Cmu02g2236 174 MobiDBLite consensus disorder prediction 97 114 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g0368 Cmu-Chr1:3862439 Cmu02g2236 Cmu-Chr2:35963406 5.70E-44 dispersed
Cmu02g2236 Cmu-Chr2:35963406 Cmu06g1183 Cmu-Chr6:22736571 1.10E-46 dispersed
Cmu02g2236 Cmu-Chr2:35963406 Cmu11g0298 Cmu-Chr11:3502136 1.20E-48 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5844 PF04690 YABBY 3.50E-75 CL0114 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu02g2236 K25796 - csv:101222154 324.324