Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu02g2236 ATGTCACTGGACATGATGGCATCAGAACGTGTTTGTTATGTTCACTGCAACTTCTGCAACACCATTTTAGCGGTAAGTGTTCCATGCAACAGCATGTTCACACTTGTGACTGTGAGATGTGGCCATTGTTCAAATCTGTTGTCTGTAAACATGGGAGCTTCTCTTCAAGTTGTTCCTCCTCAAGATTCCCAACAGGGTCATAAACAGCAGCAGGTGAATGCTGGGGATTCAAGTAAGGACAGAGCTTCTTCTTCTTCTTCTTCTTCTTCTAAATGCACTAAAATTGGCTCTCTTGATTCTGCTGAACGTGACCAACATAGAATCCCTCCTATTCGCCCACCAGAGAAAAGACAGCGAGTTCCTTCGGCGTATAATAGGTTCATCAAAGAGGAAATCCAAAGGATTAAGGCTAAGAATCCTGACATAAGCCACAGAGAAGCCTTTAGCACAGCAGCTAAAAATTGGGCACATTTTCCTCATATTCACTTTGGGCTGAAGCTGGATGGAAATAAGCAAACAAAATAA 525 42.67 MSLDMMASERVCYVHCNFCNTILAVSVPCNSMFTLVTVRCGHCSNLLSVNMGASLQVVPPQDSQQGHKQQQVNAGDSSKDRASSSSSSSSKCTKIGSLDSAERDQHRIPPIRPPEKRQRVPSAYNRFIKEEIQRIKAKNPDISHREAFSTAAKNWAHFPHIHFGLKLDGNKQTK 174
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 35963406 35969345 - CmPI595203_02g022360.1 Cmu02g2236 410285

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu02g2236 174 SUPERFAMILY HMG-box 110 158 IPR036910 -
Cmu02g2236 174 Gene3D High mobility group box domain 110 161 IPR036910 -
Cmu02g2236 174 PANTHER PROTEIN YABBY 6-RELATED 6 172 IPR006780 GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0010158(PANTHER)|GO:0045165(PANTHER)
Cmu02g2236 174 FunFam axial regulator YABBY 5-like 103 161 - -
Cmu02g2236 174 MobiDBLite consensus disorder prediction 58 96 - -
Cmu02g2236 174 CDD HMG-box_SF 119 155 - -
Cmu02g2236 174 MobiDBLite consensus disorder prediction 58 121 - -
Cmu02g2236 174 Pfam YABBY protein 7 165 IPR006780 GO:0007275(InterPro)
Cmu02g2236 174 MobiDBLite consensus disorder prediction 97 114 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu02g2236 K25796 - - csv:101222154 324.324
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g0368 Cmu-Chr1:3862439 Cmu02g2236 Cmu-Chr2:35963406 5.70E-44 dispersed
Cmu02g2236 Cmu-Chr2:35963406 Cmu06g1183 Cmu-Chr6:22736571 1.10E-46 dispersed
Cmu02g2236 Cmu-Chr2:35963406 Cmu11g0298 Cmu-Chr11:3502136 1.20E-48 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmu05g2416 . 16 154 C2C2-YABBY Transcription Factor Family AT1G69180 56.8 4.3e-38 154.8
Cmu05g2432 . 16 154 C2C2-YABBY Transcription Factor Family AT1G69180 56.8 4.3e-38 154.8
Cmu01g0368 . 100 260 C2C2-YABBY Transcription Factor Family AT2G45190 58.6 2.0e-42 169.1
Cmu02g2236 . 1 174 C2C2-YABBY Transcription Factor Family AT1G08465 65.9 1.1e-54 209.9
Cmu01g0368 . 56 250 C2C2-YABBY Transcription Factor Family AT1G08465 51.8 1.5e-43 172.9
Cmu06g1183 . 6 180 C2C2-YABBY Transcription Factor Family AT1G08465 54.1 2.2e-42 169.1
Cmu10g1134 . 22 192 C2C2-YABBY Transcription Factor Family AT1G08465 53.8 4.2e-41 164.9
Cmu11g0298 . 5 180 C2C2-YABBY Transcription Factor Family AT1G08465 50.3 7.2e-41 164.1
Cmu01g0368 . 67 259 C2C2-YABBY Transcription Factor Family AT4G00180 55.5 4.3e-50 194.9
Cmu10g1134 . 33 192 C2C2-YABBY Transcription Factor Family AT4G00180 54.9 8.5e-38 154.1
Cmu05g2594 . 1 164 C2C2-YABBY Transcription Factor Family AT1G23420 53.1 5.6e-39 158.3
Cmu06g1183 . 8 176 C2C2-YABBY Transcription Factor Family AT2G26580 71.0 1.0e-62 236.5
Cmu11g0298 . 8 171 C2C2-YABBY Transcription Factor Family AT2G26580 71.3 4.3e-61 231.1
Cmu02g2236 . 1 174 C2C2-YABBY Transcription Factor Family AT2G26580 59.2 1.1e-48 189.9
Cmu01g0368 . 58 222 C2C2-YABBY Transcription Factor Family AT2G26580 54.4 6.2e-44 174.1
Cmu10g1134 . 22 192 C2C2-YABBY Transcription Factor Family AT2G26580 50.3 3.2e-40 161.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004363 1 4 0 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 2 1 1 1 1 1 1 2 2 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5844 PF04690 YABBY 3.50E-75 CL0114 Cmu TF