Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu02g2245 ATGAAATATTGCATTGATGCCATCGGACTTACAAGATTGGTAATTTTCCTAGCAGCTTTTTCAACCATCTTTGGCGCATCGCCGCCGGTTCCGACCGAAAAGTCGAAATTAGACAGCTGGTTTTCAGAAAATGTGAAGCCCTTCGCTGATCGTAAGGCGGAGCTTGATCCGGCGCTTGTGACTGCAGAAGAAAACACCACCGTGGTTAAAGTAAGGACCGACGGAAGTGGAGATTTCAAGACAATCACCGAAGCCATTAACAGCGTGCCAGCTGGCAACACGAGACGTGTAGTGATTTGGATTGGAGAAGGAGTTTATAAAGAGAAGCTTAAGATTGATAGAAATAAGCCTTTCGTTACTCTTTATGGCTCTCCTAATAATATGCCTAAATTGACCTTTGATGGCGATGCTGCCAAATACGGCACCGTTTACAGTGCAACCTTGATTGTTGAGTCTGATTATTTCACCGCCGCCAATCTCATCATTGAGAATTCATCTCCAAGGCCAGATGGGAAAAGAAAAGGAGCACAAGCATTAGCAGCAAGACTATTAGGGACTAAAGCGGCAGTTTACAATTGCAAATTCTATGGATTTCAAGATACCCTTTGCGATGACGACGGTTTGCATCTCTACAAAGATTGCTTCATCCAAGGCACCGTCGACTTCATTTTCGGAAAGGGAACATCTCTTTATTTGAATAGTCAATTGGATGTGGTGGGAGACGGAGGATTGGGAGTGATCACAGCCCATTCAAGGGAACAAGAATCAGATGGAAGTGGATATTCGTTCGTTCATTGTAGCATTACGGGAACTGGCGGCAAAAACACTTATTTGGGAAGAGCTTGGATGCCCAGATCTAGGGTTGTCTTCGCCTACACTACAATGGCTGACATCATTCATTCCGAAGGCTGGAACGATATGAACCATGCCGGTTACGATGCCACGGTTTTGTTCGGAGAATATAAGTGTTCGGGACCGGGATCGGAGCCGAGCGGGCGCGTAAAATACAGCAAGCAATTGAGTGATGTAGAAGTGAAACCGTTCATTAGTCTTGGTTACGTGCAGAGCGAGAAGTGGCTGCTTCCTCCTCCCAATCCTCAAGCTTAA 1107 45.62 MKYCIDAIGLTRLVIFLAAFSTIFGASPPVPTEKSKLDSWFSENVKPFADRKAELDPALVTAEENTTVVKVRTDGSGDFKTITEAINSVPAGNTRRVVIWIGEGVYKEKLKIDRNKPFVTLYGSPNNMPKLTFDGDAAKYGTVYSATLIVESDYFTAANLIIENSSPRPDGKRKGAQALAARLLGTKAAVYNCKFYGFQDTLCDDDGLHLYKDCFIQGTVDFIFGKGTSLYLNSQLDVVGDGGLGVITAHSREQESDGSGYSFVHCSITGTGGKNTYLGRAWMPRSRVVFAYTTMADIIHSEGWNDMNHAGYDATVLFGEYKCSGPGSEPSGRVKYSKQLSDVEVKPFISLGYVQSEKWLLPPPNPQA 368
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 36075039 36076800 + CmPI595203_02g022450.1 Cmu02g2245 410294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu02g2245 368 SUPERFAMILY Pectin lyase-like 67 361 IPR011050 -
Cmu02g2245 368 Pfam Pectinesterase 69 354 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Cmu02g2245 368 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 51 360 - GO:0030599(PANTHER)|GO:0045490(PANTHER)|GO:0052689(PANTHER)
Cmu02g2245 368 Gene3D - 62 363 IPR012334 -
Cmu02g2245 368 FunFam Pectinesterase 64 362 - -
Cmu02g2245 368 ProSitePatterns Pectinesterase signature 2. 216 225 IPR033131 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g2242 Cmu-Chr2:36061063 Cmu02g2245 Cmu-Chr2:36075039 2.30E-216 dispersed
Cmu02g2245 Cmu-Chr2:36075039 Cmu03g2082 Cmu-Chr3:29229608 7.20E-109 dispersed
Cmu02g2244 Cmu-Chr2:36070301 Cmu02g2245 Cmu-Chr2:36075039 2.30E-216 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu02g2245 K01051 - csv:101205095 617.461