Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu02g2297 ATGGGATACGTGGCATGCGCTGCTGTCGCTACTTTAAAGATGCGGTCCCCACTTTTGCGCCAAGCGTTTCCCGGACTTTGCTCGTCAATGGGTGAAGGAACAGTAGCCGTAGCTCTTGAATTTGAGTTCCCAAAAGGGTCGTTGCTTTACTCCAATTACTGTGCTCTCTCAGGCTTTGGATTTCCAGAATTTTCCATCCAAGTGAGTTCGTCTCTCTCTGACTTGATTTTGCAAGACTCTGGAAGACCTGAAGAAATTAAAGTTGTAGAGCATTTTACTTCCAAGGAACTGATAAGCCTCATTCAAGCGAACAATGAGCAATGCTCTGCACAAGGATTGGATACAGTCAAAGCTGATGGCTTCTTCTCTGTTTATCCAACATTTGTTCTGCATGGTATGCAGTCGAAGTCTAAAAGTGTGAATCATCTAGGATCTGAACCACCAAATATGCAGCAGACTAGTAGTTATTCTGAACCTTGGTGGCGTAGTATTGGGTACAACCATATCTCCCCGCCACCAGCAGGAGGGAATGTGTCCAATTCAACATCACTGGAATGTACTAATGGTGCTTCAGAATCTAATGATGGTCAGTCGATGTCAAATGATGATTTAAATGAAGACGATGATGATGACACCACAAAAGATTCACATGCAAGTTATGGGCAAGTACAGCACAACTGTCAGCATGCTGTTTCTGCTGCTCCTACAGTGCATGGTGGATGTATCACACAACCTCCTCAGCTTGAACTTGTAGGCCACTCTATTGCATGTGCATCAAACCCATATCAGGATCCTTATTATGCTGGAGTGATGGCTGCCTATGGGCATCAACCGGGTTATCCTCCTTTTCTTGGGATGCCACATGCTAGAATGGCTTTGCCCCTTGAGGTGACACAGGAGCCTGTTTTTGTGAATGCCAAACAATATCAAGGGATTCTAAGGCGAAGACAAGCACGTGCTAAAGCAGAGGTTGAGAACAAACTGATAAAAGTTAGAAAGCCATATCTTCATGAATCACGTCACCAGCATGCCATGAGACGGGCAAGGGGTAGTGGTGGACGATTTGCCAAGAAAAATGAAGCTAATTCCTCGAGTTCTACTCTGAAGGACAAGGACTCCGGTTCTGGTCAAGCTATCTCGTCGCATTCTGCTGGTTCATCTGGTTCTGAAGCAGCGCCTTGTGCCTTGGCTGAAACCTGGAATTCTTCCAATGGCCAACAAGAAGAAAGGACCCAGTTGCATGAGGCATATGAAGCTCGAAGTTATGTGAACGGCAGTAGCCAATTCCATAATTACAGTAGCTTCCAAGCTTCTCCGTATGGTTTACGGTCTGGTGAGAGAGGTGAAGATGGAGACTGCTCGGGACAGCAGCGAAGTGTCTCAGAAAATCAGGCTGCACAGAGGCGTCTTGCCATCAAAACTTTGATCCGTAATTTGGTTGCTAATTTCATCAAAATTTTCCAGGTGGCAGTGAGGACAGCCATATTCTGGATAAGAGTGCCAATACTGGTTGCCAAACACACTGCTCGCACAGTTATCAGCTTCTTCTCTGTGATGACATAA 1563 45.62 MGYVACAAVATLKMRSPLLRQAFPGLCSSMGEGTVAVALEFEFPKGSLLYSNYCALSGFGFPEFSIQVSSSLSDLILQDSGRPEEIKVVEHFTSKELISLIQANNEQCSAQGLDTVKADGFFSVYPTFVLHGMQSKSKSVNHLGSEPPNMQQTSSYSEPWWRSIGYNHISPPPAGGNVSNSTSLECTNGASESNDGQSMSNDDLNEDDDDDTTKDSHASYGQVQHNCQHAVSAAPTVHGGCITQPPQLELVGHSIACASNPYQDPYYAGVMAAYGHQPGYPPFLGMPHARMALPLEVTQEPVFVNAKQYQGILRRRQARAKAEVENKLIKVRKPYLHESRHQHAMRRARGSGGRFAKKNEANSSSSTLKDKDSGSGQAISSHSAGSSGSEAAPCALAETWNSSNGQQEERTQLHEAYEARSYVNGSSQFHNYSSFQASPYGLRSGERGEDGDCSGQQRSVSENQAAQRRLAIKTLIRNLVANFIKIFQVAVRTAIFWIRVPILVAKHTARTVISFFSVMT 520
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 36524294 36530759 - CmPI595203_02g022970.1 Cmu02g2297 410346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu02g2297 520 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 300 355 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu02g2297 520 MobiDBLite consensus disorder prediction 172 218 - -
Cmu02g2297 520 ProSiteProfiles NF-YA/HAP2 family profile. 298 358 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu02g2297 520 MobiDBLite consensus disorder prediction 173 200 - -
Cmu02g2297 520 Gene3D - 298 360 - -
Cmu02g2297 520 MobiDBLite consensus disorder prediction 357 388 - -
Cmu02g2297 520 ProSitePatterns NF-YA/HAP2 subunit signature. 303 323 IPR018362 GO:0003677(InterPro)|GO:0016602(InterPro)
Cmu02g2297 520 MobiDBLite consensus disorder prediction 336 352 - -
Cmu02g2297 520 SMART cbf3 297 358 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu02g2297 520 PRINTS CCAAT-binding transcription factor subunit B signature 332 355 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu02g2297 520 PRINTS CCAAT-binding transcription factor subunit B signature 301 323 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu02g2297 520 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 152 416 IPR001289 GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)
Cmu02g2297 520 MobiDBLite consensus disorder prediction 440 460 - -
Cmu02g2297 520 MobiDBLite consensus disorder prediction 334 392 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g2458 Cmu-Chr1:36536621 Cmu02g2297 Cmu-Chr2:36524294 3.30E-27 dispersed
Cmu02g2297 Cmu-Chr2:36524294 Cmu04g0112 Cmu-Chr4:1785329 2.00E-24 dispersed
Cmu02g2297 Cmu-Chr2:36524294 Cmu03g1930 Cmu-Chr3:26745035 2.40E-73 wgd
Cmu02g2297 Cmu-Chr2:36524294 Cmu09g0394 Cmu-Chr9:3788705 6.30E-42 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5849 PF02045 CBFB_NFYA 3.50E-26 No_clan Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu02g2297 K08064 - csv:101212961 624.009