Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu02g2304 ATGGCGTCACTGGCGCTTACTTCCTCGTATCTCCCTTCTCTCCGGTCGCGTCTTCCGAAATCCGAATCTAATGCTCAAATTCGTTGCTCCTCTCTCCGTTCCAGTCTTCCCAAACCAGCTATCTTCGGTAGCGGTGTCAGAACTAGCTTCCGCATTCCGCCTTCTTTATCCAATGAAGCTAAATCCGTTAAGCCAGCTCTAAATTTTGGAAGTTCTCGTGGAAATCTCGGTGGTTTTACTGTCCGAGCGTCGTCTTCTTCTGCTGCTGCTGTAGTTCCGGCTCCGGCTTCTCAGCCATGGCAAGGTGCGGCGATTAAGCCACTGATTGCTTCTATTGCTACAGGTATCATTCTGTGGTTTGTTCCAGTGCCGTCTGGCGTTTCTCGAAACGCGTGGCAATTGCTTGCGATATTCCTCGCTACCATCGTTGGGATTATTACTCAGCCCTTGCCTCTTGGTGCGGTTGCTTTGCTGGGACTTGGCGCCTCTGTTCTGACTAAAACCCTAACCTTCGCTGCTGCCTTCTCTGCGTTTGCTGATCCTATCCCATGGCTCATCGCTCTTGCTTTCTTCTTCGCTCGAGGGTTCATTAAGACCGGACTTGGTAATCGAATTGCTTATCAATTTGTTTCTCTATTCGGTAGTTCGTCGTTAGGGTTAGGGTATAGTTTAGTATTTAGCGAGGCCCTGTTGGCGCCGGCAATTCCTTCGGTGTCGGCCAGAGCAGGAGGGATATTCCTTCCACTGGTAAAATCGCTTTGTGTTGCTTGCGGTAGCAATGTTGGTGATGGGACGGAGAACCGTTTGGGAGCCTGGTTGATGCTAACTTGCTTTCAAACTTCGGTGATTTCATCATCCATGTTCTTGACGGCTATGGCTGCTAATCCTCTGAGTGCAAATCTGACGTATAACACGATTAAGCAGACGATTGGATGGACCGACTGGGCTAAAGCAGCCATTGTTCCAGGATTGATTTCCTTGATTGTGGTGCCATTGCTTTTGTATGTTATTTATCCGCCCACGGTGAAGAGCAGTCCAGACGCACCAAAGCTTGCTAGAGAGAAATTGGAAAAGATGGGACCAATGACCAAGAATGAGATTATAATGGCCGGAACTCTGTTTCTCACGGTGGGTCTTTGGGTTTTTGGAGGGGCACTTAATGTGGACGCTGTTACTGCTGCCATTTTGGGACTGTCCGTCCTTCTTGTAACCGGGGTTGTGACATGGAAAGAGTGCTTGGCAGAAGCTGTTGCCTGGGACACTCTAACTTGGTTTGCTGCACTCATTGCAATGGCAGGGTATCTCAACAAATATGGTCTAATCTCCTGGTTCAGCCAAACTGTAGTGAAGTTTGTTGGCGGCCTAGGTCTTTCATGGCAGCTTTCGTTCGGCATTTTAGTTCTTCTCTACTTCTACTCCCACTACTTCTTTGCAAGTGGAGCTGCTCATATAGGCGCTATGTTTACAGCCTTCTTATCTGTTGCTAGCGCTTTGGGAACTCCCCCCTACTTTGGAGCAATTGTACTTTCCTTCTTATCTAATCTGATGGGTGGCCTAACTCACTATGGCATTGGGTCAGCACCTGTTTTCTATGGTGCTAACTATGTTCCTCTTGCTCAATGGTGGGGCTATGGATTCATCGTATCTGTTGTCAACATCATTATCTGGCTCGGCGCTGGGGGAATTTGGTGGAAGGCCATTGGTTTATGGTGA 1713 48.45 MASLALTSSYLPSLRSRLPKSESNAQIRCSSLRSSLPKPAIFGSGVRTSFRIPPSLSNEAKSVKPALNFGSSRGNLGGFTVRASSSSAAAVVPAPASQPWQGAAIKPLIASIATGIILWFVPVPSGVSRNAWQLLAIFLATIVGIITQPLPLGAVALLGLGASVLTKTLTFAAAFSAFADPIPWLIALAFFFARGFIKTGLGNRIAYQFVSLFGSSSLGLGYSLVFSEALLAPAIPSVSARAGGIFLPLVKSLCVACGSNVGDGTENRLGAWLMLTCFQTSVISSSMFLTAMAANPLSANLTYNTIKQTIGWTDWAKAAIVPGLISLIVVPLLLYVIYPPTVKSSPDAPKLAREKLEKMGPMTKNEIIMAGTLFLTVGLWVFGGALNVDAVTAAILGLSVLLVTGVVTWKECLAEAVAWDTLTWFAALIAMAGYLNKYGLISWFSQTVVKFVGGLGLSWQLSFGILVLLYFYSHYFFASGAAHIGAMFTAFLSVASALGTPPYFGAIVLSFLSNLMGGLTHYGIGSAPVFYGANYVPLAQWWGYGFIVSVVNIIIWLGAGGIWWKAIGLW 570
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 36568596 36572167 - CmPI595203_02g023040.1 Cmu02g2304 410353

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu02g2304 570 CDD ArsB_NhaD_permease 142 564 - -
Cmu02g2304 570 PANTHER DICARBOXYLATE TRANSPORTER 2.1, CHLOROPLASTIC 14 570 IPR030676 GO:0005215(PANTHER)
Cmu02g2304 570 NCBIfam DASS family sodium-coupled anion symporter 122 564 IPR001898 GO:0016020(InterPro)|GO:0022857(InterPro)|GO:0055085(InterPro)
Cmu02g2304 570 Pfam Sodium:sulfate symporter transmembrane region 107 570 IPR001898 GO:0016020(InterPro)|GO:0022857(InterPro)|GO:0055085(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu02g2304 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g2304 Cmu-Chr2:36568596 Cmu10g1731 Cmu-Chr10:20437787 6.50E-125 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmu01g2272 . 1 406 Antiporters AT5G46110 79.6 2.1e-173 605.5
Cmu05g2428 . 51 415 Antiporters AT5G46110 74.0 6.8e-148 520.8
Cmu10g1364 . 1 395 Antiporters AT5G54800 73.7 1.5e-160 562.8
Cmu05g1512 . 1 395 Antiporters AT5G54800 73.2 3.0e-158 555.1
Cmu01g2155 . 46 391 Antiporters AT5G54800 77.8 2.0e-149 525.8
Cmu09g1839 . 51 394 Antiporters AT3G01550 64.6 1.3e-121 433.3
Cmu01g1275 . 53 417 Antiporters AT3G01550 59.5 1.4e-112 403.3
Cmu01g1275 . 1 419 Antiporters AT5G33320 72.4 1.1e-155 546.6
Cmu09g1839 . 69 397 Antiporters AT5G33320 61.2 2.7e-109 392.5
Cmu01g2155 . 46 388 Antiporters AT1G61800 82.0 1.0e-159 560.1
Cmu05g1512 . 1 396 Antiporters AT1G61800 72.6 1.0e-159 560.1
Cmu10g1364 . 39 396 Antiporters AT1G61800 78.2 9.4e-158 553.5
Cmu05g0268 . 106 405 Antiporters AT1G61800 52.6 1.2e-85 313.9
Cmu05g0268 . 48 417 Antiporters AT5G17630 74.2 3.3e-150 528.5
Cmu05g1512 . 81 394 Antiporters AT5G17630 53.9 6.5e-90 328.2
Cmu10g1364 . 89 394 Antiporters AT5G17630 53.7 7.2e-89 324.7
Cmu10g1232 . 63 432 Antiporters AT3G13320 80.5 6.1e-163 570.9
Cmu02g1051 . 72 450 Antiporters AT3G13320 76.6 1.1e-156 550.1
Cmu07g1399 . 149 518 Antiporters AT3G13320 75.7 1.8e-154 542.7
Cmu04g0749 . 5 430 Antiporters AT2G38170 72.0 1.2e-164 576.6
Cmu10g2909 . 28 439 Antiporters AT2G38170 63.5 7.8e-140 494.2
Cmu03g0699 . 32 394 Antiporters AT2G38170 61.7 1.4e-120 430.3
Cmu04g0749 . 1 398 Antiporters AT3G51860 72.4 1.8e-152 536.2
Cmu10g2909 . 24 415 Antiporters AT3G51860 65.6 8.8e-136 480.7
Cmu03g0699 . 32 370 Antiporters AT3G51860 66.0 3.7e-118 422.2
Cmu10g1232 . 63 403 Antiporters AT3G51860 51.6 1.1e-82 304.3
Cmu02g1051 . 64 417 Antiporters AT3G51860 50.4 1.9e-82 303.5
Cmu07g1399 . 155 486 Antiporters AT3G51860 50.1 1.3e-78 290.8
Cmu04g0749 . 34 435 Antiporters AT5G01490 62.5 2.2e-136 482.6
Cmu10g2909 . 49 442 Antiporters AT5G01490 62.8 3.4e-132 468.8
Cmu03g0699 . 26 396 Antiporters AT5G01490 56.7 2.7e-113 406.0
Cmu10g1232 . 62 432 Antiporters AT1G55720 76.6 1.1e-151 533.5
Cmu02g1051 . 72 446 Antiporters AT1G55720 73.7 1.5e-145 513.1
Cmu07g1399 . 149 515 Antiporters AT1G55720 71.4 1.6e-139 493.0
Cmu10g1232 . 62 432 Antiporters AT1G55730 81.1 1.5e-164 576.2
Cmu02g1051 . 54 446 Antiporters AT1G55730 74.4 2.7e-158 555.4
Cmu07g1399 . 149 519 Antiporters AT1G55730 76.3 7.2e-156 547.4
Cmu04g0749 . 65 431 Antiporters AT1G55730 51.5 9.9e-97 350.9
Cmu03g2236 . 4 529 Antiporters AT5G27150 77.4 1.4e-230 795.8
Cmu06g0531 . 22 527 Antiporters AT5G27150 74.8 8.1e-218 753.4
Cmu09g0609 . 102 608 Antiporters AT5G27150 70.6 3.0e-204 708.4
Cmu09g1999 . 12 517 Antiporters AT5G27150 60.4 5.9e-168 587.8
Cmu09g0610 . 24 520 Antiporters AT5G27150 60.1 1.0e-159 560.5
Cmu06g0531 . 22 536 Antiporters AT3G06370 71.9 6.4e-210 727.2
Cmu03g2236 . 5 529 Antiporters AT3G06370 70.6 6.2e-205 710.7
Cmu09g0609 . 102 609 Antiporters AT3G06370 67.1 3.1e-188 655.2
Cmu09g1999 . 5 517 Antiporters AT3G06370 59.3 4.9e-162 568.2
Cmu09g0610 . 24 520 Antiporters AT3G06370 60.6 4.8e-157 551.6
Cmu09g1999 . 1 524 Antiporters AT5G55470 69.5 1.1e-211 733.0
Cmu03g2236 . 18 520 Antiporters AT5G55470 60.2 6.2e-170 594.3
Cmu06g0531 . 19 514 Antiporters AT5G55470 59.1 3.7e-167 585.1
Cmu09g0609 . 88 595 Antiporters AT5G55470 55.6 6.2e-154 541.2
Cmu09g0610 . 24 520 Antiporters AT5G55470 51.7 1.6e-133 473.4
Cmu03g2236 . 10 529 Antiporters AT3G05030 78.9 8.2e-234 806.6
Cmu06g0531 . 22 527 Antiporters AT3G05030 75.4 1.9e-222 768.8
Cmu09g0609 . 102 608 Antiporters AT3G05030 70.3 2.7e-205 711.8
Cmu09g1999 . 12 517 Antiporters AT3G05030 59.6 2.7e-168 589.0
Cmu09g0610 . 24 520 Antiporters AT3G05030 59.6 4.9e-162 568.2
Cmu07g1265 . 136 701 Antiporters AT1G15460 70.4 1.7e-229 792.3
Cmu01g0492 . 104 674 Antiporters AT1G15460 69.4 6.0e-227 783.9
Cmu08g1246 . 152 696 Antiporters AT1G15460 65.6 3.5e-211 731.5
Cmu10g1945 . 102 645 Antiporters AT1G15460 59.2 5.5e-180 627.9
Cmu01g1274 . 157 699 Antiporters AT1G15460 57.2 8.2e-176 614.0
Cmu10g1945 . 3 709 Antiporters AT3G06450 69.8 8.0e-293 1003.0
Cmu01g1274 . 58 738 Antiporters AT3G06450 69.5 1.6e-280 962.2
Cmu07g1265 . 40 681 Antiporters AT3G06450 56.2 3.9e-215 745.0
Cmu01g0492 . 10 657 Antiporters AT3G06450 55.5 5.1e-215 744.6
Cmu08g1246 . 56 691 Antiporters AT3G06450 56.1 6.7e-215 744.2
Cmu10g1945 . 1 716 Antiporters AT2G47160 79.1 0.0e+00 1153.3
Cmu01g1274 . 56 725 Antiporters AT2G47160 74.4 2.9e-303 1037.7
Cmu07g1265 . 35 681 Antiporters AT2G47160 56.5 3.0e-215 745.3
Cmu08g1246 . 57 691 Antiporters AT2G47160 57.2 8.7e-215 743.8
Cmu01g0492 . 10 657 Antiporters AT2G47160 56.5 7.3e-214 740.7
Cmu07g1265 . 35 701 Antiporters AT1G74810 69.6 2.2e-276 948.3
Cmu01g0492 . 10 678 Antiporters AT1G74810 69.1 5.5e-272 933.7
Cmu08g1246 . 57 699 Antiporters AT1G74810 66.3 1.4e-251 865.9
Cmu10g1945 . 7 645 Antiporters AT1G74810 59.8 4.2e-219 758.1
Cmu01g1274 . 62 703 Antiporters AT1G74810 58.4 5.1e-217 751.1
Cmu10g1945 . 1 708 Antiporters AT3G62270 81.5 0.0e+00 1156.7
Cmu01g1274 . 56 749 Antiporters AT3G62270 75.9 2.9e-308 1054.3
Cmu08g1246 . 57 691 Antiporters AT3G62270 58.8 7.8e-221 763.8
Cmu07g1265 . 35 681 Antiporters AT3G62270 58.0 1.1e-217 753.4
Cmu01g0492 . 10 657 Antiporters AT3G62270 58.4 8.9e-217 750.4
Cmu08g1246 . 57 700 Antiporters AT4G32510 68.2 1.3e-260 896.0
Cmu07g1265 . 35 698 Antiporters AT4G32510 65.4 8.5e-257 883.2
Cmu01g0492 . 2 674 Antiporters AT4G32510 64.7 3.0e-254 874.8
Cmu10g1945 . 1 645 Antiporters AT4G32510 55.1 1.1e-206 716.8
Cmu01g1274 . 56 699 Antiporters AT4G32510 54.3 4.0e-206 714.9
Cmu08g1246 . 57 698 Antiporters AT5G25430 70.1 3.9e-262 901.0
Cmu07g1265 . 41 698 Antiporters AT5G25430 65.6 1.8e-246 849.0
Cmu01g0492 . 10 674 Antiporters AT5G25430 64.7 9.7e-245 843.2
Cmu10g1945 . 7 645 Antiporters AT5G25430 56.2 6.8e-206 714.1
Cmu01g1274 . 54 711 Antiporters AT5G25430 54.2 1.2e-202 703.4
Cmu01g0664 . 27 1145 Antiporters AT2G01980 66.3 0.0e+00 1385.9
Cmu01g0664 . 20 738 Antiporters AT1G14660 66.1 1.6e-272 935.6
Cmu08g1635 . 51 576 Antiporters AT5G11800 84.8 1.9e-239 825.5
Cmu03g2163 . 19 586 Antiporters AT5G11800 75.2 2.4e-223 771.9
Cmu05g0847 . 57 563 Antiporters AT5G11800 69.9 2.2e-187 652.5
Cmu05g0847 . 31 565 Antiporters AT5G51710 82.6 3.8e-242 834.3
Cmu08g1635 . 49 558 Antiporters AT5G51710 70.0 3.1e-188 655.2
Cmu03g2163 . 51 560 Antiporters AT5G51710 68.6 8.9e-183 637.1
Cmu08g1635 . 42 572 Antiporters AT2G19600 81.6 5.4e-231 797.3
Cmu03g2163 . 39 584 Antiporters AT2G19600 80.9 8.6e-229 790.0
Cmu05g0847 . 32 563 Antiporters AT2G19600 67.3 4.6e-182 634.8
Cmu05g1131 . 148 563 Antiporters AT1G49810 76.3 2.1e-176 615.5
Cmu05g1131 . 1 581 Antiporters AT3G19490 76.3 2.9e-245 844.7
Cmu02g2304 . 83 569 Antiporters AT5G12860 89.9 1.2e-251 865.9
Cmu10g1731 . 83 577 Antiporters AT5G64280 67.3 1.5e-195 679.5
Cmu10g1731 . 1 577 Antiporters AT5G64290 70.3 6.1e-216 747.3
Cmu07g0292 . 3 379 Antiporters AT4G28390 81.2 2.3e-174 608.6
Cmu08g1541 . 441 821 Antiporters AT4G28390 74.0 1.6e-156 549.3
Cmu04g1195 . 5 307 Antiporters AT4G28390 63.2 4.4e-109 391.7
Cmu08g1541 . 439 822 Antiporters AT3G08580 79.1 1.7e-169 592.4
Cmu07g0292 . 1 378 Antiporters AT3G08580 72.3 3.9e-150 528.1
Cmu04g1195 . 7 307 Antiporters AT3G08580 57.6 5.0e-97 351.7
Cmu08g1541 . 439 822 Antiporters AT5G13490 82.4 9.0e-179 623.2
Cmu07g0292 . 8 378 Antiporters AT5G13490 79.6 2.6e-162 568.5
Cmu04g1195 . 8 307 Antiporters AT5G13490 61.5 6.0e-106 381.3
Cmu04g1195 . 4 301 Antiporters AT5G17400 80.2 2.1e-138 488.8
Cmu07g0292 . 79 365 Antiporters AT5G17400 64.5 1.2e-109 393.3
Cmu08g1541 . 522 813 Antiporters AT5G17400 63.0 5.1e-108 387.9
Cmu03g2275 . 4 542 Antiporters AT1G08960 65.6 2.7e-184 642.1
Cmu10g2337 . 41 565 Antiporters AT5G17850 52.8 6.3e-149 524.6
Cmu10g1872 . 1 537 Antiporters AT2G47600 70.8 1.1e-211 733.0
Cmu07g1284 . 1 300 Antiporters AT1G79900 68.4 1.7e-116 416.0
Cmu09g0201 . 1 304 Antiporters AT1G79900 68.2 2.9e-116 415.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006806 2 1 2 1 1 1 2 1 1 1 1 1 2 1 1 2 1 3 2 0 1 1 1 1 1 1 1 1 1 1 37