Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu02g2312 ATGACTGATCCTTACCCCATCAACAATAATGGCTCCTTTGGCAATTTATACCCTCTTCACCATTACTTTTCTTCTTCTTCTTCTTCTTCTTCTTCCAATTCTTACTCTCCTTATTATGATCATCCCTTCTCTCTTTCTTACTCCAATGATAATAATAACAATAATAATACCCTAATGACCTCTCCTCATTATCCTTCTTCCTCTCCTCAAGTCCTTCTTCCCCTTCTAAGCTTAAGCCCTGCAAGAGTAGCACAAGATCATGATAATGAAAATCACTCATTTTCCAAAGACTTGATCAAGAACTTTTGCAACCCAGCTGAAGATGATGTTGACAATGATAATGATGATGATGATGATCAAAGTGTTACTGTTGCTTTGCATTTAGGGCTTCCAACTCCTTCTTCTTCTTCTTCTAATTCTGATTTGATTTTGAGACTTTCTTCAACTGAGATCTCAGATCAAGATGATCATCATCAATTAGAAGATCAAGTTCCTAATCCTAATTATTCTTCTTCTAATTCCAATATTATTACTAGTGCTGCTACTACTACTACTGGACTTAATAAGGGTCAATATTGGATTCCAACTCCTGCTCAGATTCTTATTGGTCCAACTCAGTTTTCTTGCCCTCTTTGCTTCAAGACTTTCAATAGATACAACAACATGCAGATGCATATGTGGGGGCATGGATCTCAATACAGAAAAGGGCCACAATCACTAAGAGGAACACAACCAACAGCAATGCTTAGGCTGCCATGTTATTGCTGTGCAGTTGGGTGCAGAAACAACATAGACCATCCAAGGTCAAAGCCATTAAAAGACTTCAGAACTCTTCAAACACATTACAAAAGAAAACATGGAATGAAGCCATTTACATGTAGAAAATGTGGGAAAGCTTTTGCTGTGAGAGGAGATTGGAGAACCCATGAGAAAAATTGTGGGAAGCTTTGGCATTGCACTTGTGGCTCTGATTTTAAGCATAAGAGATCTCTTAAAGATCATATCAAAGCCTTTGGACATGGCCATGCAGCTTATGGAATTGATCACTCTTTTGAAGAAGATGATGAGCCAGCTTCTGAGATTGAAACATGA 1092 38.0 MTDPYPINNNGSFGNLYPLHHYFSSSSSSSSSNSYSPYYDHPFSLSYSNDNNNNNNTLMTSPHYPSSSPQVLLPLLSLSPARVAQDHDNENHSFSKDLIKNFCNPAEDDVDNDNDDDDDQSVTVALHLGLPTPSSSSSNSDLILRLSSTEISDQDDHHQLEDQVPNPNYSSSNSNIITSAATTTTGLNKGQYWIPTPAQILIGPTQFSCPLCFKTFNRYNNMQMHMWGHGSQYRKGPQSLRGTQPTAMLRLPCYCCAVGCRNNIDHPRSKPLKDFRTLQTHYKRKHGMKPFTCRKCGKAFAVRGDWRTHEKNCGKLWHCTCGSDFKHKRSLKDHIKAFGHGHAAYGIDHSFEEDDEPASEIET 363
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 36662979 36665817 + CmPI595203_02g023120.1 Cmu02g2312 410361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu02g2312 363 ProSitePatterns Zinc finger C2H2 type domain signature. 209 229 IPR013087 -
Cmu02g2312 363 Gene3D Classic Zinc Finger 206 229 - -
Cmu02g2312 363 FunFam Zinc finger protein WIP2 260 342 - -
Cmu02g2312 363 SUPERFAMILY beta-beta-alpha zinc fingers 272 311 IPR036236 -
Cmu02g2312 363 ProSiteProfiles Zinc finger C2H2 type domain profile. 291 318 IPR013087 -
Cmu02g2312 363 Gene3D Classic Zinc Finger 251 339 - -
Cmu02g2312 363 PANTHER ZINC FINGER PROTEIN WIP2 37 362 IPR043584 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0010468(PANTHER)|GO:0010468(InterPro)|GO:0048856(PANTHER)
Cmu02g2312 363 SMART c2h2final6 291 311 IPR013087 -
Cmu02g2312 363 SMART c2h2final6 207 229 IPR013087 -
Cmu02g2312 363 SMART c2h2final6 317 340 IPR013087 -
Cmu02g2312 363 SMART c2h2final6 254 286 IPR013087 -
Cmu02g2312 363 ProSiteProfiles Zinc finger C2H2 type domain profile. 207 234 IPR013087 -
Cmu02g2312 363 MobiDBLite consensus disorder prediction 153 173 - -
Cmu02g2312 363 Pfam Zinc finger, C2H2 type 207 226 IPR013087 -
Cmu02g2312 363 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 290 314 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g1191 Cmu-Chr1:22315858 Cmu02g2312 Cmu-Chr2:36662979 2.10E-83 transposed
Cmu03g1572 Cmu-Chr3:15833256 Cmu02g2312 Cmu-Chr2:36662979 2.90E-86 transposed
Cmu04g0161 Cmu-Chr4:3256517 Cmu02g2312 Cmu-Chr2:36662979 8.70E-98 transposed
Cmu10g2462 Cmu-Chr10:31211233 Cmu02g2312 Cmu-Chr2:36662979 7.40E-95 transposed
Cmu02g2312 Cmu-Chr2:36662979 Cmu09g0403 Cmu-Chr9:3882760 5.70E-90 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5852 None None None None Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu02g2312 - - - 0.0