Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmu02g2360 | ATGGGAAAATGCTGGCTTCTAGTTATAAACAGAGATGATTGTATGAGTACCATAGAATTCAGAGAGAAGGGGATGTATCAGCAGCCGAAGTCAAGGGAAGAACATGCTTCTTCTGCAGCCAGCTTCTGCAAAGAAGTGACCGAGTTGCGCCTTGCATCAATAGATTCTCAAGCAGCAACTTCTCGTCCAGAGTTCAAAGGTGTCACTTTCAGGAAAGCTTCAACTGGTGGTTTTGCTAGGAGTCGTAATGATGTACACGAGCTACTCGATTGTACTGTTTGCATGAATTTAATGCATCCCCCAATTTACCAGTGTGCAAATGGGCACACTCTTTGTTCAAGCTGCAAGGCGAGGGTTCAGAACTGTTGCCCGACCTGCCGGCATGAGCTGGGGAACATAAGGTGCCTAGCACTGGAAAAGGTGGCTGAGTCGCTCGAGCTCCCTTGTGTGTACCAAAACCTAGGTTGCATTGACATGTTCCCATATTACAGCAAGCTTAAACATGAGAAGAATTGTAAATACCGGCCGTACAACTGCCCTTACGCTGGAGGTGAATGTCGTGTAACTGGTGATATTCCATACCTTGTCATGCATCTCAAGGACGATCACGAGGTTGATATGCATGATGGATGTTCCTTCAGCCATAGATATGTCAAATCCAATCCCCAAGAAGTTGAAAATGCTACATGGATGCTTACTGTTTTCAACTGCTTCGGACGACAATTCTGTTTGCACTTCGAAGCATTTCGCTTAGGAACAGCACCTGTTTACATGGCATTCCTCCGGTTCATGGGAGACGATGACGATGCAAAACAATTTTCTTACAGTCTGGAAGTTGGTGGAAATGGAAGAAAACTCATCTGGCAAGGTATTCCTAGAAGTATCCGCGATAGCCATCGGAAGGTTCGAGACAGTCACGATGGACTAATCATTCAGAGGAAGTTGGCACTATTCTGCTCTGGAAATGAGGGGATGGAACTGAAGTTAAAGGTTACAGGGCGAATATGGAGAGTAAGAGTCTTCACCGGCTTAAACCCTAAACCCTGTGGAGTTGGCGTAGTGGGAAGGAAGAAAACCGCCGAACAAATGCTGATTACTCGAAAGCTTTCTGCTTCGAACCTCAAATCCTTTCTTTCTCTGCGTTTCGTTTCCCCTTCTCTGACTTCGCACTTGTTTTCTTCACCTCTCTGCTTAAACCCACCAATCCTTTGCCCACTTCCTCCCACTCTTTCGCCGTCTTTCTCTTCCAAACCCACACCTCCAGAAGCTTCCAACCTCACCCGCGATGGCAACTACGACGAAGCCACTTCCCGATTCTCCCTCGTCTGCCCTGGCTGTGGAGTTCACATGCAAGACACCAATCCCAAACATCCTGGCTTCTTCGTCAAACCCTCGAGAAAAGATTCCAATTATCGCTTACTTACCCATCTTGTCCCCGTCCATGATGAATCTGAATGCTCCGAATTTCTCAAGAGAGGCCTAGTAATCGAGCCAGATAATCAGAAAACTGAAGAGAATGTGACCGAGAAACCCCACAAGCCGACCGTGTGTTCGCGGTGCCACTCATTGAGGCATTATGGGAAGGTAAAGGATCCTTCAGTAGAGAATTTACTGCCGGATTTTGATTTCGATCATACCATCGGTAGGAGACTGGCGTCGACTTCGGGAACCCGATCTGTTGTTCTGATCGTCGTTGATGCTGCAGATTTTGATGGGTCATTCCCAAAGAAGGTAGCGAACTTGGTCTCGGCCACTATTGAGGATAATTCAGCTGCCTGGAAACAGGGGAAATCAGGGAATGTGCCTAGAGTGGTGCTTGTAGTGACAAAAATTGATCTGCTGCCTAGCTCTTTATCACCGACGAGATTTGAGCATTGGGTGAGGCAGAGAGCGAGGGAGGGAGGGATTAACAAGATAACGAGTTTGCATATGGTGAGTGCGGTTAGAGATTGGGGGCTGAAAAATTTGGTGGAGGATGTAATTGAATTGGTTGGGGCGAGAGGAAATGTGTGGGCAATTGGAGCACAAAATGCTGGGAAAAGCACGCTGATTAATTCAATAGGAAAGCATGTAGGTGGGAAGATTACGCAGTTGACTGAAGCACCAGTTCCTGGGACAACGTTGGGGATAATCAGAGTAGAGGGAATTTTTCCGGGTCAAGCCAAATTGTTTGATACTCCTGGGCTTCTCAATCCCCATCAGATTACTACGAGATTGACTAGGGAAGAGCAGAAACTTGTTCACATCAGCAAGGAATTGAAGCCCAGGACTTACAGGATTAAGGTTGGTCACACAATTCATGTTGCTGGCCTCATGAGGCTAGATGTGGAAGAAACAACTGTGGATACAATTTATGTTACGGTGTGGGCATCTCCTTATCTTCCATTACACATGGGGAAAACAGAAAATGCAACCAAAATACAGGAGGACCATTTTGGGAATCAATTGCAGCCACCTATAGGCAAAGATCGAGTTGCAGAACTTGGAAAATGGGTGAGAAGGGAATTTCGTGTTTGTGGAAGTAGTTGGGATTCAAGTTGTGTAGATGCTGCTGCTGCTGGCCTGGGTTGGTTCGCCATTGGACTAAAAGGCGAGGCAGTCTTGAGCATATGGACTTATGAGGGGATCGAGGTTGTTATACGAAGTTCTGTCATTCCTTACAGATCAAACTTCTTTGAAGATGCTGGATTTACAGTCTCGAAAATTGTCTCCAAGGCTGATCAGGTTGCAAATAAACCACATGATCAAAGCGAAAAGAAGAAGAAAAAGGGTGACCCCAAAGTTCGTGTGCTGACTGAGACGTCAGTATCGAAATCTCGCTCCAAATATGATTCTGCTTAA | 2841 | 46.22 | MGKCWLLVINRDDCMSTIEFREKGMYQQPKSREEHASSAASFCKEVTELRLASIDSQAATSRPEFKGVTFRKASTGGFARSRNDVHELLDCTVCMNLMHPPIYQCANGHTLCSSCKARVQNCCPTCRHELGNIRCLALEKVAESLELPCVYQNLGCIDMFPYYSKLKHEKNCKYRPYNCPYAGGECRVTGDIPYLVMHLKDDHEVDMHDGCSFSHRYVKSNPQEVENATWMLTVFNCFGRQFCLHFEAFRLGTAPVYMAFLRFMGDDDDAKQFSYSLEVGGNGRKLIWQGIPRSIRDSHRKVRDSHDGLIIQRKLALFCSGNEGMELKLKVTGRIWRVRVFTGLNPKPCGVGVVGRKKTAEQMLITRKLSASNLKSFLSLRFVSPSLTSHLFSSPLCLNPPILCPLPPTLSPSFSSKPTPPEASNLTRDGNYDEATSRFSLVCPGCGVHMQDTNPKHPGFFVKPSRKDSNYRLLTHLVPVHDESECSEFLKRGLVIEPDNQKTEENVTEKPHKPTVCSRCHSLRHYGKVKDPSVENLLPDFDFDHTIGRRLASTSGTRSVVLIVVDAADFDGSFPKKVANLVSATIEDNSAAWKQGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRAREGGINKITSLHMVSAVRDWGLKNLVEDVIELVGARGNVWAIGAQNAGKSTLINSIGKHVGGKITQLTEAPVPGTTLGIIRVEGIFPGQAKLFDTPGLLNPHQITTRLTREEQKLVHISKELKPRTYRIKVGHTIHVAGLMRLDVEETTVDTIYVTVWASPYLPLHMGKTENATKIQEDHFGNQLQPPIGKDRVAELGKWVRREFRVCGSSWDSSCVDAAAAGLGWFAIGLKGEAVLSIWTYEGIEVVIRSSVIPYRSNFFEDAGFTVSKIVSKADQVANKPHDQSEKKKKKGDPKVRVLTETSVSKSRSKYDSA | 946 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 37114412 | 37121280 | + | CmPI595203_02g023600.1 | Cmu02g2360 | 410409 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmu02g2360 | 946 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 144 | 199 | IPR013083 | - | |
Cmu02g2360 | 946 | Pfam | Sina, TRAF-like domain | 235 | 332 | IPR018121 | GO:0005737(InterPro)|GO:0006511(InterPro)|GO:0007275(InterPro) | |
Cmu02g2360 | 946 | MobiDBLite | consensus disorder prediction | 932 | 946 | - | - | |
Cmu02g2360 | 946 | MobiDBLite | consensus disorder prediction | 911 | 929 | - | - | |
Cmu02g2360 | 946 | Gene3D | - | 548 | 734 | IPR027417 | - | |
Cmu02g2360 | 946 | MobiDBLite | consensus disorder prediction | 908 | 946 | - | - | |
Cmu02g2360 | 946 | PANTHER | GENETIC INTERACTOR OF PROHIBITINS 3, MITOCHONDRIAL | 418 | 924 | IPR050896 | GO:0005739(PANTHER) | |
Cmu02g2360 | 946 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 44 | 143 | IPR013083 | - | |
Cmu02g2360 | 946 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 559 | 743 | IPR027417 | - | |
Cmu02g2360 | 946 | Gene3D | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 205 | 332 | IPR008974 | GO:0005515(InterPro) | |
Cmu02g2360 | 946 | CDD | RING-HC_SIAHs | 89 | 127 | - | - | |
Cmu02g2360 | 946 | FunFam | E3 ubiquitin-protein ligase SINAT5-like | 200 | 332 | - | - | |
Cmu02g2360 | 946 | Pfam | YqeH-like, C-terminal | 787 | 884 | IPR048422 | - | |
Cmu02g2360 | 946 | CDD | YqeH | 517 | 729 | - | - | |
Cmu02g2360 | 946 | ProSiteProfiles | Zinc finger RING-type profile. | 91 | 127 | IPR001841 | - | |
Cmu02g2360 | 946 | SUPERFAMILY | TRAF domain-like | 144 | 335 | - | - | |
Cmu02g2360 | 946 | ProSiteProfiles | Zinc finger SIAH-type profile. | 144 | 204 | IPR013010 | GO:0008270(InterPro) | |
Cmu02g2360 | 946 | FunFam | E3 ubiquitin-protein ligase SINAT3 | 141 | 199 | - | - | |
Cmu02g2360 | 946 | Pfam | Sina, zinc finger | 140 | 215 | - | - | |
Cmu02g2360 | 946 | Pfam | E3 ubiquitin-protein ligase sina/sinah, RING finger | 91 | 126 | IPR049548 | - | |
Cmu02g2360 | 946 | Pfam | 50S ribosome-binding GTPase | 670 | 744 | IPR006073 | GO:0005525(InterPro) | |
Cmu02g2360 | 946 | SUPERFAMILY | RING/U-box | 73 | 130 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmu01g0481 | Cmu-Chr1:4951078 | Cmu02g2360 | Cmu-Chr2:37114412 | 2.80E-22 | dispersed | |
Cmu02g2360 | Cmu-Chr2:37114412 | Cmu04g0175 | Cmu-Chr4:3786140 | 5.70E-134 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmu02g2360 | - | - | - | 0.0 |