Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu02g2394 ATGAGAAGATCAGGTGTAAACCAACCAAAAGTCAAGCGTCTTGTTGGAAAATACGAAATTGGTCGAACAATTGGTGAGGGTACATTTGCGAAAGTGAAAATTGCCAAAAATTCGGAGACTGGGGATCATGTAGCAATAAAGATTCTCGACAAAGAGAAAGTTCTGAAGCACAAGATGGCTGAACAGATCAAGCGGGAAATTGCCACAATGAAACTAATAAAGCATCCACATGTCGTCCAATTATTTGAGGTCATGGGGAGCAAAACCAAGATATTTATTGTTTTGGAATTTGTTACTGGAGGAGAACTTTTTGATAAAATTGTAAATCATGGACGGATGAGTGAAAATGAGGCACGGAGATATTTCCAGCAACTTATAAATGCTGTTGATTATTGTCATAGCAGGGGTGTTTACCACAGGGATCTTAAGCCAGAAAATCTATTGTTAGATGCCTACGGGAACCTTAAAGTGTCTGATTTTGGATTGAGTGCACTGTCACAACAAGTTAAGGATGATGGCCTGCTTCACACTACTTGTGGAACTCCAAACTATGTTGCTCCCGAGGTCCTTAAGGATAGAGGCTACGATGGTACAACTGCAGACTTATGGTCTTGTGGAGTTATACTCTTTGTACTGCTTGCAGGTTACTTGCCTTTTGATGATTCTAATCTCATCAACCTTTATAAAAAGATCTCGGCTGCTGAATTTACTTGTCCTCCGTGGCTTTCTTTAGATGCCATGAAATTGATAGCTCGAATTTTGGATCCCAACCCAATGACTCGCATCACTATACCTGAAATTTTGGAAGATGAATGGTTTAAGAAAGATTATAAGCCCCCTGTTTTTGAGGAGCCTAAGATTGCAAACTTGGATGATGTAGAAGCTGTCTTCAAAGATTCAGAAGAGCACCATGTGACAGAGAAGAAGGAAGAACACCCAGCAGCTATGAATGCCTTCGAGTTAATTTCAATGTCGAAAGGGCTCAACCTGGCAAATTTGTTTGGTACAGAACAGGAATTCAAGAGAGAAACAAGGTTCACCTCTAAATGCTCAGCTAATGAAATTGTAAATAAGATCGAAGAAGCTGCAAAACCTCTTGGTTTTGATGTACAAAAGAAAAATTACAAGATGAGGCTTGAAAATGTGAAAGCCGGTCGGAAGGGAAACCTTAATGTTGCCACAGAGATTCTGCAAGTTGCGCCTTCTGTCCATGTGGTTGAGATGAGAAAAGCAAAGGGAGACACTTTAGAGTTTCACAAGTTCTACAAAAACCTCTCCACCTCCCTGGAGGATGTTGTTTGGAAGACGGAGGAAGACATGCAGGAAACAAAGTGA 1335 40.6 MRRSGVNQPKVKRLVGKYEIGRTIGEGTFAKVKIAKNSETGDHVAIKILDKEKVLKHKMAEQIKREIATMKLIKHPHVVQLFEVMGSKTKIFIVLEFVTGGELFDKIVNHGRMSENEARRYFQQLINAVDYCHSRGVYHRDLKPENLLLDAYGNLKVSDFGLSALSQQVKDDGLLHTTCGTPNYVAPEVLKDRGYDGTTADLWSCGVILFVLLAGYLPFDDSNLINLYKKISAAEFTCPPWLSLDAMKLIARILDPNPMTRITIPEILEDEWFKKDYKPPVFEEPKIANLDDVEAVFKDSEEHHVTEKKEEHPAAMNAFELISMSKGLNLANLFGTEQEFKRETRFTSKCSANEIVNKIEEAAKPLGFDVQKKNYKMRLENVKAGRKGNLNVATEILQVAPSVHVVEMRKAKGDTLEFHKFYKNLSTSLEDVVWKTEEDMQETK 444
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 37406086 37411464 + CmPI595203_02g023940.1 Cmu02g2394 410443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu02g2394 444 ProSiteProfiles NAF domain profile. 311 335 IPR018451 GO:0007165(InterPro)
Cmu02g2394 444 CDD STKc_SnRK3 17 272 - -
Cmu02g2394 444 Gene3D Phosphorylase Kinase; domain 1 7 97 - -
Cmu02g2394 444 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 10 423 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Cmu02g2394 444 Gene3D Kinase associated domain 1, KA1 310 435 - -
Cmu02g2394 444 SMART serkin_6 18 273 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu02g2394 444 FunFam Non-specific serine/threonine protein kinase 310 435 - -
Cmu02g2394 444 SUPERFAMILY Protein kinase-like (PK-like) 14 301 IPR011009 -
Cmu02g2394 444 Pfam NAF domain 313 372 IPR004041 GO:0007165(InterPro)
Cmu02g2394 444 Pfam Protein kinase domain 18 273 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu02g2394 444 ProSiteProfiles Protein kinase domain profile. 18 273 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu02g2394 444 CDD CIPK_C 317 431 - -
Cmu02g2394 444 Gene3D Transferase(Phosphotransferase) domain 1 98 280 - -
Cmu02g2394 444 FunFam Non-specific serine/threonine protein kinase 9 97 - -
Cmu02g2394 444 ProSitePatterns Protein kinases ATP-binding region signature. 24 47 IPR017441 GO:0005524(InterPro)
Cmu02g2394 444 FunFam Non-specific serine/threonine protein kinase 11 314 - -
Cmu02g2394 444 ProSitePatterns Serine/Threonine protein kinases active-site signature. 137 149 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g2426 Cmu-Chr1:36190940 Cmu02g2394 Cmu-Chr2:37406086 3.60E-172 dispersed
Cmu02g2394 Cmu-Chr2:37406086 Cmu03g1253 Cmu-Chr3:7456159 1.00E-181 dispersed
Cmu06g0046 Cmu-Chr6:432878 Cmu02g2394 Cmu-Chr2:37406086 5.60E-73 transposed
Cmu06g0226 Cmu-Chr6:2469207 Cmu02g2394 Cmu-Chr2:37406086 3.20E-44 transposed
Cmu10g2540 Cmu-Chr10:32125456 Cmu02g2394 Cmu-Chr2:37406086 1.00E-36 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75357 PF00069 Pkinase 7.70E-73 CL0016 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu02g2394 - - - 0.0