Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu02g2396 ATGAAAAATGCTGCCATAGGGCTCGACTCTCCTCTTTCATCTCTATTCTTCGACCTCTTCTGCGTACGGAGGTGCTCAATTCCGTCTCTGGTCTCCAGCTCTTTGGCTACTCCCTTCAATTCCCAATTCAGGGTCTTCAGGGAAGGGAGATTACGCGTCCAAGGGAAGACTATGGCTGTAACAGCCCCAGGGCAGCTCAACGTTAACGAGTCTCCTTCGTGGGGATCTAGAAGTGTCGACTGCTTTGAAAAACTGGAGCAGATTGGTGAAGGCACTTATGGTCAAGTTTACATGGCCAGAGAATTAAAAACAGGTGAAATTGTTGCACTGAAGAAAATACGAATGGACAATGAGAGGGAGGGGTTCCCTATTACTGCCATACGAGAAATCAAAATTTTAAAGAAGCTTCATCATGAAAATGTAATCAAGTTGAAAGAGATCGTGACATCTCCAGGTCCTGAGAAGGATGAACAAGGGAAGCCAGATGGTAATAAGTACAAAGGTGGAATCTACATGGTTTTTGAGTACATGGACCATGATTTGACTGGTCTTGCTGATCGTCCAGGGATGAGATTTTCAGTTCCTCAAATCAAGTGTTACATGAGGCAGCTTCTCACCGGGCTTCACTATTGTCATGTAAATCAAGTACTCCATAGAGATATAAAAGGCTCAAATCTGCTTATTGACAATGAAGGAAATCTGAAGCTTGCAGATTTTGGGCTTGCCCGATCATTTTCTAATGATCACAATGCAAATTTAACAAATCGTGTCATTACCTTATGGTACAGACCTCCTGAATTGCTGCTTGGGTCGACCAAATATGGTCCAGCTGTGGATATGTGGTCTGTTGGTTGTATCTTTGCAGAACTTCTACATGGGAAGCCAATATTCCCTGGGAAGGATGAGCCGGAGCAACTAAATAAGATCTTTGAGCTGTGTGGTGCTCCGGATGAAGTCAATTGGCCTGGAGTTTCTAAAATCCCTTGGTACAATAATTTCAAGCCCACAAGGCCGATGAAGAGACGTCTTAGAGAAGTTTTCCGGCATTTTGATCGTCATGCTCTAGAACTGTTGGAGAAGATGCTTACGCTCGATCCTTCTCAGAGGATATCTGCCAAGGATGCCCTAGATGCGGAGTATTTTTGGACGGATCCATTACCATGTGATCCTAAAAGTTTGCCTAAGTATGAATCATCACACGAGTTCCAGACAAAGAAGAAGCGCCAACAGCAACGACAACATGAAGAAACTGCAAAGCGACAGAAGTTGCAACATCCACAGCATGCACGCCTTCCACCTATTCAGCAATCGGGGCAATCACATGCACAGATGCGACCAGTGCCTAACCAACCAATTCATGGGTCTCAACAACCAGTTGCTGCAGGGCCTAGCCATCATTTTGGAAAGCCTCGTGGACCCCCAGGTCCTGGTAGGTATCCGGGTGGAAATCCCCCTTCTGGATACAACCACTCAAGTCGTGGTGGCGGTCAAGGTGGTTATGGTAACACACAATATGCTCAAGGACGAGGTGCTGCACCTTATGGGTCTGGTAACATGTCTGGTGCTGGTCCTCGAGGTGGAGCTGGAGGCAGCGGTGGTTATGGCGTGGGAGCTCCAAATTATCCACAGAATGGTCCATATCCTGGTAGTTCCGGTACTGGCCGTGGCTCCAATGTGATGGGTGGAAATCGCAACCAACAATATGGGTGGCAACAACAATGA 1722 46.52 MKNAAIGLDSPLSSLFFDLFCVRRCSIPSLVSSSLATPFNSQFRVFREGRLRVQGKTMAVTAPGQLNVNESPSWGSRSVDCFEKLEQIGEGTYGQVYMARELKTGEIVALKKIRMDNEREGFPITAIREIKILKKLHHENVIKLKEIVTSPGPEKDEQGKPDGNKYKGGIYMVFEYMDHDLTGLADRPGMRFSVPQIKCYMRQLLTGLHYCHVNQVLHRDIKGSNLLIDNEGNLKLADFGLARSFSNDHNANLTNRVITLWYRPPELLLGSTKYGPAVDMWSVGCIFAELLHGKPIFPGKDEPEQLNKIFELCGAPDEVNWPGVSKIPWYNNFKPTRPMKRRLREVFRHFDRHALELLEKMLTLDPSQRISAKDALDAEYFWTDPLPCDPKSLPKYESSHEFQTKKKRQQQRQHEETAKRQKLQHPQHARLPPIQQSGQSHAQMRPVPNQPIHGSQQPVAAGPSHHFGKPRGPPGPGRYPGGNPPSGYNHSSRGGGQGGYGNTQYAQGRGAAPYGSGNMSGAGPRGGAGGSGGYGVGAPNYPQNGPYPGSSGTGRGSNVMGGNRNQQYGWQQQ 573
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 37416799 37423546 - CmPI595203_02g023960.1 Cmu02g2396 410445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu02g2396 573 Gene3D Transferase(Phosphotransferase) domain 1 179 421 - -
Cmu02g2396 573 MobiDBLite consensus disorder prediction 394 423 - -
Cmu02g2396 573 MobiDBLite consensus disorder prediction 392 573 - -
Cmu02g2396 573 PANTHER CELL DIVISION PROTEIN KINASE 82 381 IPR050108 GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0008353(PANTHER)|GO:0032968(PANTHER)|GO:0070816(PANTHER)
Cmu02g2396 573 SMART serkin_6 82 381 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu02g2396 573 Gene3D Phosphorylase Kinase; domain 1 69 178 - -
Cmu02g2396 573 Pfam Protein kinase domain 82 381 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu02g2396 573 ProSitePatterns Protein kinases ATP-binding region signature. 88 111 IPR017441 GO:0005524(InterPro)
Cmu02g2396 573 ProSitePatterns Serine/Threonine protein kinases active-site signature. 216 228 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu02g2396 573 ProSiteProfiles Protein kinase domain profile. 82 381 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu02g2396 573 MobiDBLite consensus disorder prediction 430 457 - -
Cmu02g2396 573 CDD STKc_CDK9_like 82 381 - -
Cmu02g2396 573 MobiDBLite consensus disorder prediction 485 504 - -
Cmu02g2396 573 SUPERFAMILY Protein kinase-like (PK-like) 76 389 IPR011009 -
Cmu02g2396 573 FunFam Cyclin-dependent kinase C-2 179 421 - -
Cmu02g2396 573 MobiDBLite consensus disorder prediction 544 573 - -
Cmu02g2396 573 FunFam Cyclin-dependent kinase C-2 69 178 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g2396 Cmu-Chr2:37416799 Cmu10g2170 Cmu-Chr10:27745529 3.60E-272 dispersed
Cmu02g2396 Cmu-Chr2:37416799 Cmu03g2235 Cmu-Chr3:30980116 2.90E-96 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75359 PF00069 Pkinase 5.50E-75 CL0016 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu02g2396 K08819 - csv:101220936 982.245