Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu03g0632 ATGGCGGCTTCCAACCGCTGCATGAACACTTCTTGCAGAGCCGCCATCCCCCACGATTGGACCAAAGGATGGCCTCTGGGATCCGCCGGATACGCACATCTCTGCCTCAACTGCGGATCCGCTTATGAAAATTTAGTCTTCTGTGATACATATCACTTAGAGGAAACTGGTTGGAGGGATTGCAGTTTTTGTGGCAAGAGAATTCACTGTGGATGTATAGCTTCTAAGTCTATGTTTGAATGTCTGGATTATGGAGGTATTGGGTGCACTAGCTGTGTGAAAAGATCTCGACTTGGAGTGATCCGGAGAGATGAAATTTCTAATGGCTTTGATGCAGTGACAGTTGGTAATGTTGGCTTTCTGCCACCTACTTCTGTCGAGGATCAAGTGGTTCGAAATGGCATTAATGAGGAAAAGCTTTTACAGTTGTGTAACATCATGGAGGCAAATGAACCCAACCACTTTCAGCAATCTCAAAGAGTTGACAGAAGTGCATCTCCTGCACAAAACAGAGGAGAAAATCTCAGGAGCCCATTTGGAGAAGTTAGATCAAGCTTTTTTAATATGAATAAGCTACCTGTTAAATGCCAACCATCTGTTGGTTCATTAACGTACTCCAAACTAGATACTAGCAGACCACACTTAGAACTAAAAGATATGAAAGAATCCCTAAGTCAGCCATCGTTAAATATAACTTTGGGAGTTCCATTAGGTACTCCAAACTTTGTGGTACCCTTTTCAGGAAGTGCTGCTGAAGAGGATGAAAAGAGCATTCTGCCATTTCAACAGGGTCAAAGATCTCGTCCAATTTTTCCCAAGCTCATAAAAACTGGGACCGCAGTTAATTCCGAAGCAAGAAAGGGAATGGCACCTCTGGTACGTATTGCTCGGCCACCTGCTGAAGGTCGAGGTAAAAACCAACTTCTTCCAAGGTACTGGCCAAGGATTACCGACCAAGAGCTAGAACAATTATCTGGAGATTTGAATTCTACTATTGTTCCACTCTTTGAAAAGGTGTTGAGTGCTAGTGATGCTGGTCGGATTGGTCGTTTGGTTCTGCCAAAAGCATGTGCTGAAGCATATTTCCCCCCTATCTCCCAATCAGAAGGTCTTCCTGTTAGGATTCAAGATGTGAAGGGGAATGAATGGACATTTCAGTTCAGATTTTGGCCTAACAACAACAGCAGAATGTATGTTCTGGAGGGCGTTACTCCTTGCATACAATCCATGCAATTAAGAGCTGGTGATACTGTCACTTTTAGTCGGATAGATCCTGGAGGTCAATTAGTCATGGGATTTCGAAAAGCAACAAATTCTACTGATATACAGGATGCAAAGATCCCTACACTTTCTAATGGCTCTCATTCGGGTGACGCCTCATTCTCTGGGGTCTTTCAGAATTTGCCTTTAAGAGCTGAAGGAGAAACTAGTTTGCGTAAAAGTGAAAATTCTGGGGGAAGGACAAATGATGCTTCAGGACAACAACCAGTGTTAACCATAGAGAAGAAAGGGGCTCGAAACATTGGGTCTAAAAACAAGAGGTTGCTCATGCATAGTGAAGATGCTTTGGAGTTAAGACTCACTTGGGAAGAAGCTCAAGATCTACTCCGTCCACCACCAAGTGCAAATCCCACCATTGTCACTATTGATGACCATGAATTCGAAGAGTATGATGAACCTCCAGTTTTTGGCAAGAGGACTATATTCACTGTCCGACCAACTGGGGAACAGAAACAATGGGCTCAGTGTGATGATTGCTCAAAATGGCGGAGGTTGCCTGTGGATGTTCTTCTCCCTCCAAAGTGGAGTTGTCCAGATAATGTTTGGGATTTGAGCAGATGTACATGTTCTGCACCAGAAGAGATCAGCACAAAGGAACAAGACAATCTTCTAAGAGCGAGTAAAGATTTTAAGAAACGTAAAATCATGAAGAGCCAGAAGTCTATTCAGGAACTTGAGCCTTCTGGTTTGGATGCGCTAGCCAGTGCTGCTGTTCTGGGTGATAGTATGGCTGACTTGCAGGAATCAGGTACGACGACCAGGCATCCTCGGCACCGACCAGGATGCACTTGCATCGTGTGCATTCAGCCTCCAAGTGGGAAGGGGAAGCATAAATCTACATGCACATGCAATGTCTGCTTGACTGTAAAACGCCGTTTTAAAACACTTATGCTGCGCAAGAAGAAACGCCAATCAGAACGTGAAGTGGAAACTCTGCTCAAGGATAGGAATCCACAGTTCGATGAAACAGGAACGGGTGGGACACTGAGGGGTACGTCTCTGCAAACAAACTATTTAGAGAATGAAGGAAGCCAGAGCAGGATAAAAGATGAGGAGGCTGCAAATAGCAGTGGGCAAATTGACTTGAACTGCCACCCCGACCGTGAGGACATGGAACTGGAGGGAGCAGGATTAAGCATGATGAGTCTTGTGGAGGCTGCCAGCCAACCTTTAGATAGCTATTCAAAGCAAATTGGCATCTCCAGTGTCACGAGTGAGCAGCAGTCCAGTCAACCAAGTAGCGTGGAGAGTGAGAGACGCCTGTCTGAGGAATTGTGTCATGGATCAGGACACGAGAGCACAAGATCTCTTTCTATCTTGTCCGAGTGTTCTGAGAAGATTCCTAAGCTCAGGAAGGCAAGACTGGAGCTTGAAGCACTGTACGAGGGGGTGCCAGACGATTCGGTTAATCTCACTTTTCGACATCTCACGGATGTCAATCTTCAACCCAACTCTTTTGAAAAGAGAAGAGGCACCCCATCAATTCCAATTCCAATCCCAAGAGATAATGAGACTACCCCATTAAACAAACTCCCCAGCCTAGACTTCAACAGAGCTCTGCAAGCAGCCAACCAACAGTCCCGCCCCGATACCAAAATCAGCCTTCACCCGAGTGCGCAGGTAGGTGGAAATGGAAGTGCCGGCGACATTCAAAGCCGTGCGAAGTCGGAGCATGTGGGTGGGTTAAGGCCGGCTTTGGAGTACACTGCGGCCTACGAGGAGGCAAGCCGCATCAGCGGTATGAGTTCCATGTATCAGCATCACAGGGCCACGGTCGGGACCGGGAGACGCCGCCCTGGGATTCCTCACTCCAATATATGCGCCAACTGCACCACCTACATCTATATCTTCCGACATCGTTGCCTGGTCTGTGGAAGAGTTTACTGCCGGCAATGCGTAAGAATAGGGATGGGGGAGATGACGGAGGGAAGGAAGTGTATGGAGTGTTTGGGAAGAAAATTCAGCCACAGATACATAGGGAAGGCAGGAGATGTGGGTTGCTTTGGCTGGAGGTACTCAACTGCGGTGAAGCAGGCGGAGCTCAAGTGGGCGGAGAAAGGGCCTCGCCGAAAAGGAGAGAGAAGGTACGGCGGTGGCGTAACCAACTCCATAAGCATGATGTCGGCAAGTCAGAGCCCATGGGCACCCACCACCACCAGCGTGGATGTTTCCACCATTTACAGCTCTCGTTTCGCCGTCATGTCGTCCCCGGCCCTGTCCCCTCATTCTCCGGCTCACCGCCACCATTTACCCTTTTAG 3540 47.43 MAASNRCMNTSCRAAIPHDWTKGWPLGSAGYAHLCLNCGSAYENLVFCDTYHLEETGWRDCSFCGKRIHCGCIASKSMFECLDYGGIGCTSCVKRSRLGVIRRDEISNGFDAVTVGNVGFLPPTSVEDQVVRNGINEEKLLQLCNIMEANEPNHFQQSQRVDRSASPAQNRGENLRSPFGEVRSSFFNMNKLPVKCQPSVGSLTYSKLDTSRPHLELKDMKESLSQPSLNITLGVPLGTPNFVVPFSGSAAEEDEKSILPFQQGQRSRPIFPKLIKTGTAVNSEARKGMAPLVRIARPPAEGRGKNQLLPRYWPRITDQELEQLSGDLNSTIVPLFEKVLSASDAGRIGRLVLPKACAEAYFPPISQSEGLPVRIQDVKGNEWTFQFRFWPNNNSRMYVLEGVTPCIQSMQLRAGDTVTFSRIDPGGQLVMGFRKATNSTDIQDAKIPTLSNGSHSGDASFSGVFQNLPLRAEGETSLRKSENSGGRTNDASGQQPVLTIEKKGARNIGSKNKRLLMHSEDALELRLTWEEAQDLLRPPPSANPTIVTIDDHEFEEYDEPPVFGKRTIFTVRPTGEQKQWAQCDDCSKWRRLPVDVLLPPKWSCPDNVWDLSRCTCSAPEEISTKEQDNLLRASKDFKKRKIMKSQKSIQELEPSGLDALASAAVLGDSMADLQESGTTTRHPRHRPGCTCIVCIQPPSGKGKHKSTCTCNVCLTVKRRFKTLMLRKKKRQSEREVETLLKDRNPQFDETGTGGTLRGTSLQTNYLENEGSQSRIKDEEAANSSGQIDLNCHPDREDMELEGAGLSMMSLVEAASQPLDSYSKQIGISSVTSEQQSSQPSSVESERRLSEELCHGSGHESTRSLSILSECSEKIPKLRKARLELEALYEGVPDDSVNLTFRHLTDVNLQPNSFEKRRGTPSIPIPIPRDNETTPLNKLPSLDFNRALQAANQQSRPDTKISLHPSAQVGGNGSAGDIQSRAKSEHVGGLRPALEYTAAYEEASRISGMSSMYQHHRATVGTGRRRPGIPHSNICANCTTYIYIFRHRCLVCGRVYCRQCVRIGMGEMTEGRKCMECLGRKFSHRYIGKAGDVGCFGWRYSTAVKQAELKWAEKGPRRKGERRYGGGVTNSISMMSASQSPWAPTTTSVDVSTIYSSRFAVMSSPALSPHSPAHRHHLPF 1179
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 567509 578414 + CmPI595203_03g006320.1 Cmu03g0632 411418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu03g0632 1179 MobiDBLite consensus disorder prediction 829 861 - -
Cmu03g0632 1179 ProSiteProfiles Zinc finger CW-type profile. 574 624 IPR011124 GO:0008270(InterPro)
Cmu03g0632 1179 CDD B3_DNA 334 435 IPR003340 GO:0003677(InterPro)
Cmu03g0632 1179 SMART B3_2 336 436 IPR003340 GO:0003677(InterPro)
Cmu03g0632 1179 MobiDBLite consensus disorder prediction 155 173 - -
Cmu03g0632 1179 Pfam CW-type Zinc Finger 579 622 IPR011124 GO:0008270(InterPro)
Cmu03g0632 1179 MobiDBLite consensus disorder prediction 474 497 - -
Cmu03g0632 1179 MobiDBLite consensus disorder prediction 481 496 - -
Cmu03g0632 1179 Gene3D - 571 623 - -
Cmu03g0632 1179 MobiDBLite consensus disorder prediction 951 985 - -
Cmu03g0632 1179 SUPERFAMILY DNA-binding pseudobarrel domain 333 437 IPR015300 -
Cmu03g0632 1179 Gene3D - 314 441 IPR015300 -
Cmu03g0632 1179 MobiDBLite consensus disorder prediction 911 935 - -
Cmu03g0632 1179 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 4 845 - -
Cmu03g0632 1179 MobiDBLite consensus disorder prediction 951 978 - -
Cmu03g0632 1179 FunFam B3 domain-containing transcription repressor VAL1 314 441 - -
Cmu03g0632 1179 ProSiteProfiles B3 DNA-binding domain profile. 336 437 IPR003340 GO:0003677(InterPro)
Cmu03g0632 1179 MobiDBLite consensus disorder prediction 829 843 - -
Cmu03g0632 1179 MobiDBLite consensus disorder prediction 767 792 - -
Cmu03g0632 1179 MobiDBLite consensus disorder prediction 155 176 - -
Cmu03g0632 1179 Pfam B3 DNA binding domain 336 435 IPR003340 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g2220 Cmu-Chr1:34601661 Cmu03g0632 Cmu-Chr3:567509 9.30E-166 dispersed
Cmu03g0632 Cmu-Chr3:567509 Cmu10g2975 Cmu-Chr10:35945590 6.70E-217 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5855 PF02362 B3 5.30E-16 CL0405 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu03g0632 K09287 - csv:101214226 1458.74