Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu03g0639 ATGACTTCTTCTTACTCTGACCTTCTAGCCTCCGGCAACAACCATCCTCCTTCCTCCGCCGCACCCCACGCCGATCTCCGGGGTTCCGGCACCGGAGTTCCTAAATTCAAATCCCTCCCTCCTCCTTCTCTCCCTCTCTCTCCTCCTCCCCTCTCTCCTTCTTCCTTTTTCGCTATTCCTCCTGGCTTGAGTCCCGCCGAGCTTCTTGATTCCCCTGTTCTTCTCAGTGCTTCTCATGTTTTGCCGTCGCCGACCACTGGGAGTTTCCCGTCTCAGTCGTTGAATTGGAAGAGCAATTCTGGGTATAATCAGCAGAGCATTAAGGAAGAAAACAAATATCTGTCTAATTTCTCATTTCAAACTCAATCGTCAAAGCTGCCGCCGACGTCTTTTCAGCCTTCATCCACCACAGCTCCCACGACTCAGGGATGGACTTTTCAAGAGCAGCGCAAGAAAGAGGATGGTTTTTCGTCGGAGAAGAATATGGTGAAGCCGGAGTTCGGATCGATGCGGAGCTTCTCACCGGAATATGGGGTTGTTCAAAACCAAAACCAAACCAATGGCAGCGGGGAGTTGCAGTCTGATTACGGCAACAATTACCCTCAACAATCTCAGACGGTGAATCGAAGATCGGACGACGGCTACAACTGGAGAAAATACGGCCAAAAACAGGTTAAAGGAAGTGAAAATCCGAGAAGCTATTACAAGTGCACTTTCCCCAATTGCCCAACAAAGAAAAAGGTCGAAAGATCCTTAGATGGACAGATCACGGAGATCGTTTACAAAGGCAGCCATAACCATCCAAAGCCCCAATCCACAAGGAGGTCGTCGCTGTCGTCCGCCGGTTCTTCCCACACCATGGTGGCTTCGAATCAGGCCACCAGCGAGATGGCGGACCAGTCATTTACAACCCAAGGCAGCGGCCAATTTGATGGCGTTGCAACGCCGGAGAATTCCTCGATTTCAATTGGCGACGACGACTTCGATCGGAGCTCTCAAAAGAGCAAATCCGGAGGGGACGATTTTGATGAGGACGAACCAGAGGCTAAGAGATGGCGAAGAGAAGGTGACAACAATGAAGGTATTTCGGCGGTCGGTAGCCGGACGGTGAGAGAGCCGAGAGTCGTCGTCCAAACCACCAGCGACATCGACATTCTCGACGATGGTTACCGGTGGAGGAAGTATGGTCAGAAAGTTGTGAAGGGAAACCCAAATCCAAGGAGTTACTACAAATGTACAAATCCAGGATGTCCAGTAAGAAAGCATGTGGAGAGAGCTTCACATGATCTAAGAGCAGTGATCACAACTTATGAAGGGAAGCACAACCACGATGTTCCACCGGCACGTGGGAGTGGAAGCCATTCCCTCAGCCGTCCATTCCCCAACAACGAAGCTCCGGCAACTGCGATCCGGCCATCGGCGTTGACCCATCAGTCAAACAACGGGGGGCATCTGCAGGGTCTGAGGCTGCAGCAATCTTCAGATTCCCAAGCAGCATTCACAGTGGAAATGGTGCAAAATGGGAATGGATTTTCATTCCCAGAATTTGGAAACTCAATGGGAATGGGAATGGGAATGGGTTCCTACATCAACCAAACACAGCCCAGTGATAATTTGTTCACCAGAGCCAAAGAAGAGCCAAGAGATCATGACATGTTCATCCAGTCTCTCCTATGTTAG 1680 50.48 MTSSYSDLLASGNNHPPSSAAPHADLRGSGTGVPKFKSLPPPSLPLSPPPLSPSSFFAIPPGLSPAELLDSPVLLSASHVLPSPTTGSFPSQSLNWKSNSGYNQQSIKEENKYLSNFSFQTQSSKLPPTSFQPSSTTAPTTQGWTFQEQRKKEDGFSSEKNMVKPEFGSMRSFSPEYGVVQNQNQTNGSGELQSDYGNNYPQQSQTVNRRSDDGYNWRKYGQKQVKGSENPRSYYKCTFPNCPTKKKVERSLDGQITEIVYKGSHNHPKPQSTRRSSLSSAGSSHTMVASNQATSEMADQSFTTQGSGQFDGVATPENSSISIGDDDFDRSSQKSKSGGDDFDEDEPEAKRWRREGDNNEGISAVGSRTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTNPGCPVRKHVERASHDLRAVITTYEGKHNHDVPPARGSGSHSLSRPFPNNEAPATAIRPSALTHQSNNGGHLQGLRLQQSSDSQAAFTVEMVQNGNGFSFPEFGNSMGMGMGMGSYINQTQPSDNLFTRAKEEPRDHDMFIQSLLC 559
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 623807 626034 - CmPI595203_03g006390.1 Cmu03g0639 411425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu03g0639 559 MobiDBLite consensus disorder prediction 38 56 - -
Cmu03g0639 559 MobiDBLite consensus disorder prediction 323 358 - -
Cmu03g0639 559 SUPERFAMILY WRKY DNA-binding domain 378 446 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu03g0639 559 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 136 468 IPR044810 GO:0003700(InterPro)
Cmu03g0639 559 Pfam WRKY DNA -binding domain 212 268 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu03g0639 559 Pfam WRKY DNA -binding domain 387 444 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu03g0639 559 Gene3D WRKY domain 198 271 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu03g0639 559 MobiDBLite consensus disorder prediction 79 103 - -
Cmu03g0639 559 MobiDBLite consensus disorder prediction 266 322 - -
Cmu03g0639 559 MobiDBLite consensus disorder prediction 124 216 - -
Cmu03g0639 559 FunFam WRKY transcription factor 202 271 - -
Cmu03g0639 559 ProSiteProfiles WRKY domain profile. 381 446 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu03g0639 559 MobiDBLite consensus disorder prediction 1 56 - -
Cmu03g0639 559 SMART WRKY_cls 211 269 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu03g0639 559 SMART WRKY_cls 386 445 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu03g0639 559 MobiDBLite consensus disorder prediction 437 467 - -
Cmu03g0639 559 ProSiteProfiles WRKY domain profile. 212 270 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu03g0639 559 MobiDBLite consensus disorder prediction 175 211 - -
Cmu03g0639 559 FunFam WRKY transcription factor 33 373 439 - -
Cmu03g0639 559 MobiDBLite consensus disorder prediction 1 18 - -
Cmu03g0639 559 MobiDBLite consensus disorder prediction 124 146 - -
Cmu03g0639 559 SUPERFAMILY WRKY DNA-binding domain 210 270 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu03g0639 559 Gene3D WRKY domain 373 439 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu03g0639 559 MobiDBLite consensus disorder prediction 261 367 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g1914 Cmu-Chr2:33060920 Cmu03g0639 Cmu-Chr3:623807 1.80E-77 dispersed
Cmu03g0639 Cmu-Chr3:623807 Cmu10g2952 Cmu-Chr10:35773692 3.70E-88 dispersed
Cmu03g0639 Cmu-Chr3:623807 Cmu05g2447 Cmu-Chr5:33516691 5.50E-68 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5856 PF03106 WRKY 3.40E-25 CL0274 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu03g0639 K13424 - csv:101207158 988.408