Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu03g0687 ATGTCTGTCTCCGTTGCGGTTTCGAATTCGCCGGGATTTTCTCCTTCGTCTATGTTCTGCAACAAGACGTCGATCATTTCTCCGGCGCCGGAGGCTCTCACGCTTACTTTAGCCCATTTAAAGTCGTCGCAGGCTTCTTCGTCTTGCTCTTCTTCCCCTTCTTCGCCTTCTTCCCCTTTTCGGATTAGGTTTCCCAAGCCCCCTTCTGGGCTTTCGGCGGCAGCGGCAGCGGTGGCGGTGGCTTCCACTTCTTCTCCTTCGTCGTCGTCGTCAAGCGCGATCTTGAAGAGGAAGAGACCGGCTAGGTTGGATATTCCGTTGACGCCATTGAGTTTTGGGGCTCCGGTGATGCCGTCGCCATCGTCGTTCAGGGAGGTGGTGGAGGCCGAGAGAGATGGGTATTCCGTGTATTGTAAGAGAGGGAGGAGGAGAATTGCGATGGAAGATCGCTATTCTGCCGCTATTGATCTTCGAGGAAATTCCAAAGAGGGGTTTTTTGGTGTATTTGATGGACATGGAGGTGCGAAGGCTGCAGAATTTGCAGCAAATAACTTAGAGAAGAACGTTATGAATGAAATTGAAAGACTGGCTGATAATGAAACTGATTTTGAACAAGCCATTAAACATGGCTACCTCACCACAGATTCTGATTTCCTCAAGGAGGATCAACGTGGTGGTTCATGTTGTGTGACAGCCTTGATCAAGAAAGGCAACCTTGTTATCTCCAACGCCGGTGACTGCCGTGCCGTTCTCAGCAGCCAAGGTGTTGCCGAGGCCATCACCTCCGACCACCGCCCGTCTCGGGAAGATGAAAGGCGCAGGATCGAGTCCACGGGTGGATATGTTGATTTGTGCAATGGCATTTGGAGAGTCCAGGGATCTCTAGCTGTAACTAGAGCAATTGGGGATGCTCACCTCAAACAATGGGTGATAGCAGAGCCGGAGACGAGGGAAATTCGGATCGAACCTCGACACGAGTTCTTGATCTTGGCCTCAGACGGATTATGGGAAACGGTGAGCAATCAAGAAGCAGTGGACATTGCACATCCGTTGTGTGTGGGGATTGAGAAGGCAAAGCCATTGATGGCATGTAAAAAGCTTGTGGAGCTCTCACTTTCAAGAGGTTCAGTTGATGACATTAGTGTAGTACTGATTCAATTGGCTAACTTCATCTAA 1176 50.26 MSVSVAVSNSPGFSPSSMFCNKTSIISPAPEALTLTLAHLKSSQASSSCSSSPSSPSSPFRIRFPKPPSGLSAAAAAVAVASTSSPSSSSSSAILKRKRPARLDIPLTPLSFGAPVMPSPSSFREVVEAERDGYSVYCKRGRRRIAMEDRYSAAIDLRGNSKEGFFGVFDGHGGAKAAEFAANNLEKNVMNEIERLADNETDFEQAIKHGYLTTDSDFLKEDQRGGSCCVTALIKKGNLVISNAGDCRAVLSSQGVAEAITSDHRPSREDERRRIESTGGYVDLCNGIWRVQGSLAVTRAIGDAHLKQWVIAEPETREIRIEPRHEFLILASDGLWETVSNQEAVDIAHPLCVGIEKAKPLMACKKLVELSLSRGSVDDISVVLIQLANFI 391
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1053201 1054740 - CmPI595203_03g006870.1 Cmu03g0687 411473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu03g0687 391 ProSiteProfiles PPM-type phosphatase domain profile. 133 387 IPR001932 -
Cmu03g0687 391 CDD PP2Cc 133 387 IPR001932 -
Cmu03g0687 391 SUPERFAMILY PP2C-like 133 388 IPR036457 -
Cmu03g0687 391 SMART PP2C_SIG_2 142 387 IPR001932 -
Cmu03g0687 391 FunFam probable protein phosphatase 2C 25 126 390 - -
Cmu03g0687 391 Gene3D - 134 390 IPR036457 -
Cmu03g0687 391 PANTHER PROTEIN PHOSPHATASE 121 385 IPR015655 GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Cmu03g0687 391 Coils Coil 182 202 - -
Cmu03g0687 391 ProSitePatterns PPM-type phosphatase domain signature. 165 173 IPR000222 GO:0043169(InterPro)
Cmu03g0687 391 SMART PP2C_4 126 385 IPR001932 -
Cmu03g0687 391 Pfam Protein phosphatase 2C 138 380 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu03g0687 Cmu-Chr3:1053201 Cmu11g0873 Cmu-Chr11:11452378 7.20E-67 dispersed
Cmu05g1017 Cmu-Chr5:9365112 Cmu03g0687 Cmu-Chr3:1053201 1.90E-22 transposed
Cmu07g0112 Cmu-Chr7:936068 Cmu03g0687 Cmu-Chr3:1053201 8.30E-20 transposed
Cmu08g1699 Cmu-Chr8:28501960 Cmu03g0687 Cmu-Chr3:1053201 8.90E-63 transposed
Cmu10g2378 Cmu-Chr10:30200097 Cmu03g0687 Cmu-Chr3:1053201 1.30E-30 transposed
Cmu03g0687 Cmu-Chr3:1053201 Cmu07g0481 Cmu-Chr7:5469494 1.40E-94 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu03g0687 K17506 - csv:101207841 648.277