Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu03g0699 ATGGGTTTGAATGAGCCGCTGGTATTTGGGGATTTGGAGATCAATGGAGGTGGCGAGACGGCGGCGGTTGCGGTGGTGAGGTTTGGGTTGGTTAGAGATTTGTGGGGAAATTTGGTGAAAGTGGTTTTTGGAACGAAGCTTGCTCTGCTTTTTCCGGCCATCCCTTTGGCTATGGCGGCGGAAATTTACAGCTTTGGAAGAACATGGACATTTGGTTTGAGCTTACTTGGATTGGCCCCACTTGCAGAACGTGTCAGTTTTCTGACTGAGCAGATTGCATGCTTCACGGGGCCCACAGTTAGTGGGCTAGTGAATGCAACATGTGGGAATGCAACAGAGTTAATAATAGCAATATTTGCTTTGCATCAAAATAAAGTTCATGTCTTGAAGTTTTCTCTTTTGGGTTCTATTCTCTCCAATTTACTTCTAGTCCTTGGCACATCCCTTTTCTTTGGTGGCTTATCCAATCTCAACAAGCAACAAACTTTCAACCCAAAAGTGGCCAATGTGAGCTCTGTGGTGTTGCTGTTGGGATTGGTATGCCAAATGCTGCCATTGATGTTCACATTTGCATCACCCAAAATCTCAACAAATTTTTCTTTACTTCAATTATCAAGAACTTGCAGCCTTCTAATGCTCACAGCATACATTGCTTATGTCTTCTTCCAGTTGAAAACCCATCACCAATTTTTTGGTCTACCACAGGAGGAAGAGGATGAAGAAGAAAGGGCAGTGGTTGGATTTTGGAGCTCATTTGGTTGGTTGGTTGGTATGACCATAGTCATAGCTATTTTATCACAATACATTGTGGCAACAATTGAGGATGCATCAAAATCATGGGGAGTTTCAGTGAGCTTTATAAGCATAATTTTGCTACCAATTATGGGCAATGCAGCAGAACATGCTGGATCAATTATTTTTGCTGTCAAGAACAAATTGGATATAACACTAGGGATAGCCTTGGGATCTGCAGCCCAAATTTCCCTATTTGTGGTGCCCTTGAGTGTGATTATTGGATGGTGCATGGGCATCAAAATGGATCTTGATTTTGGTATACTTGAAACAACTTCTCTTGCCTTTACCATCATCTTGACTATCTTCACCTTACAGGATGGAAGTTCACATTACATCAAAGGAATGGTACTTGTCCTATGTTATGTAGCAATTTCTTCCTGTTTTTTCTGTTCATAA 1191 41.73 MGLNEPLVFGDLEINGGGETAAVAVVRFGLVRDLWGNLVKVVFGTKLALLFPAIPLAMAAEIYSFGRTWTFGLSLLGLAPLAERVSFLTEQIACFTGPTVSGLVNATCGNATELIIAIFALHQNKVHVLKFSLLGSILSNLLLVLGTSLFFGGLSNLNKQQTFNPKVANVSSVVLLLGLVCQMLPLMFTFASPKISTNFSLLQLSRTCSLLMLTAYIAYVFFQLKTHHQFFGLPQEEEDEEERAVVGFWSSFGWLVGMTIVIAILSQYIVATIEDASKSWGVSVSFISIILLPIMGNAAEHAGSIIFAVKNKLDITLGIALGSAAQISLFVVPLSVIIGWCMGIKMDLDFGILETTSLAFTIILTIFTLQDGSSHYIKGMVLVLCYVAISSCFFCS 396
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1207958 1214485 + CmPI595203_03g006990.1 Cmu03g0699 411485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu03g0699 396 Gene3D - 243 393 IPR044880 -
Cmu03g0699 396 Gene3D - 98 237 IPR044880 -
Cmu03g0699 396 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 32 395 IPR004713 GO:0006812(InterPro)|GO:0006874(PANTHER)|GO:0008324(InterPro)|GO:0009705(PANTHER)|GO:0015369(PANTHER)|GO:0016020(InterPro)|GO:0070588(PANTHER)
Cmu03g0699 396 NCBIfam calcium/proton exchanger 52 394 IPR004798 GO:0006816(InterPro)|GO:0015369(InterPro)
Cmu03g0699 396 FunFam Vacuolar cation/proton exchanger 238 395 - -
Cmu03g0699 396 Pfam Sodium/calcium exchanger protein 251 389 IPR004837 GO:0016020(InterPro)|GO:0055085(InterPro)
Cmu03g0699 396 Pfam Sodium/calcium exchanger protein 68 224 IPR004837 GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu03g0699 Cmu-Chr3:1207958 Cmu10g1232 Cmu-Chr10:5181265 1.20E-85 dispersed
Cmu10g2909 Cmu-Chr10:35452782 Cmu03g0699 Cmu-Chr3:1207958 1.40E-118 wgd
Cmu03g0699 Cmu-Chr3:1207958 Cmu04g0749 Cmu-Chr4:21996549 2.70E-130 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu03g0699 K07300 - csv:105436053 626.706