Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu03g0742 ATGCGTGTCAAAAAGGAAGTCTCTCTCTTGTCGCGCTGCTCCAATCTTATTGGGCCACGTTTCCACCACCTCCCCAAACTAATTCTACGCGTGTCCTCTTCTGATCAACCCACCCCTTCTCAATCAACGGCTCAGATCTTTCCATTCACTACGTCACGCACTTTACTACCTCTTCGATCTGCCCGTCTCTCCCCGGGTAGCTACCCTTGCCGTCGCCGTCGTCGTCGTCGTCGGCATATTTCGGAGATTGAAGTAATCAACTGCGGCTGGGGTAGGGGGCAGGGGAGATTAAAGAACTTAGTAATGGCGGAGATTTGCTGTAAAGTGATGAGTGAGAGTGAGGCGTCGTCGTCCTGCGAGCCGAGCTCGCGAGTGGCTAGACGTCGGAGAATGGAGATCAGGAGGTGTAAATTTGTCGCCGGAGTTGCTCCGTCGGAGACTGAGACTGTTGCAAAGAGGCAGAAGCTGGAGGATCGAGCTACGTCAATATCCAGAGACTGTGATAACGCAGTCCAGAATTGTGATTCGGGAGAAGAAGAAACGGTCGGGAGATTTGTGGCCGGAGAGGTTTCGACGAAGGAGGTATCAACTCCTCTATCTCGGGAATCTCCCTCTGGCGAAGTGATTCCGAAGTTCGGATTCTCTTCTGTTTGTGGAAGGCGGAGAGATATGGAGGATGCGGTGGCGGTTCATCCATCGCTTTGTTTGACAGACAAGAAAGCCACCGATATGTTGCACTTCTTCGGTGTTTACGATGGCCATGGCTGCTCTCATGTGGCGATGAGGTGCAAGGAGCGGCTGCATGAACTGGTAAAAGATGAGTTGGATAGAGAAGAGAAGGAAGACGCCGCTGCTGCGGCAGAGGCGGAGGCGTCGCGGTGGGACCGTGCTATGAAGAGAATCTTCTGGCGAATGGACAACGAAGTTGTGGCGCGAAACAATGAAGAAGTTGTGGTTGCGAACTGTAGATGCGAGCTTCAGTCGCCGGATTGTGATGCCGTCGGATCTACCGCCGTCGTCGCAATTGTGACGCCGGATAAGATCATCGTCGCCAACTGCGGCGATTCCAGAGCCGTTCTCTGTCGCAACGGAAAGGCCATCCCTCTCTCCTCCGATCATAAGCCGGATCGTCCCGACGAACTTAGCCGAATCGAGGAAGCCGGTGGGCGAGTGATTTACTGGGACGGACCGCGAGTTCTCGGAGTTCTCGCCATGTCAAGAGCCATAGGCGATAATTATTTAAAACCGTATGTGATATCGGAGCCGGAGGTGACAATAACGAATCGGACGGCGGAGGATGAGTGCTTGATTCTAGCGAGCGACGGGCTGTGGGATGTGGTGCCGAACGAGACGGCGTGTGGAGTGGCGAGCATGTGCCTTAGGGGGAAGACGGAGGAGAGGTCTCCGGTGTCACCGTCGGGGGAGGCGGAGACGGCGGCGGAAGGGGAGGAGCGAGGGAGCGCAGACAAGGCCTGCAACGATGCGTCGATGCTGCTGACGAAGCTGGCGTTGGCCAGGCACAGTACGGACAACGTGAGCGTCGTGGTGGTGGACCTTAAGAGGGACACGTACCCTTAG 1578 55.45 MRVKKEVSLLSRCSNLIGPRFHHLPKLILRVSSSDQPTPSQSTAQIFPFTTSRTLLPLRSARLSPGSYPCRRRRRRRRHISEIEVINCGWGRGQGRLKNLVMAEICCKVMSESEASSSCEPSSRVARRRRMEIRRCKFVAGVAPSETETVAKRQKLEDRATSISRDCDNAVQNCDSGEEETVGRFVAGEVSTKEVSTPLSRESPSGEVIPKFGFSSVCGRRRDMEDAVAVHPSLCLTDKKATDMLHFFGVYDGHGCSHVAMRCKERLHELVKDELDREEKEDAAAAAEAEASRWDRAMKRIFWRMDNEVVARNNEEVVVANCRCELQSPDCDAVGSTAVVAIVTPDKIIVANCGDSRAVLCRNGKAIPLSSDHKPDRPDELSRIEEAGGRVIYWDGPRVLGVLAMSRAIGDNYLKPYVISEPEVTITNRTAEDECLILASDGLWDVVPNETACGVASMCLRGKTEERSPVSPSGEAETAAEGEERGSADKACNDASMLLTKLALARHSTDNVSVVVVDLKRDTYP 525
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1593010 1595057 + CmPI595203_03g007420.1 Cmu03g0742 411528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu03g0742 525 Coils Coil 261 297 - -
Cmu03g0742 525 SUPERFAMILY PP2C-like 204 520 IPR036457 -
Cmu03g0742 525 ProSiteProfiles PPM-type phosphatase domain profile. 211 519 IPR001932 -
Cmu03g0742 525 Gene3D - 201 523 IPR036457 -
Cmu03g0742 525 CDD PP2Cc 211 519 IPR001932 -
Cmu03g0742 525 Coils Coil 153 173 - -
Cmu03g0742 525 ProSitePatterns PPM-type phosphatase domain signature. 247 255 IPR000222 GO:0043169(InterPro)
Cmu03g0742 525 FunFam Protein phosphatase 2C 50 209 523 - -
Cmu03g0742 525 PANTHER PROTEIN PHOSPHATASE 169 518 IPR015655 GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0005634(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Cmu03g0742 525 SMART PP2C_4 201 517 IPR001932 -
Cmu03g0742 525 MobiDBLite consensus disorder prediction 464 489 - -
Cmu03g0742 525 Pfam Protein phosphatase 2C 212 468 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu03g0742 Cmu-Chr3:1593010 Cmu05g0992 Cmu-Chr5:9096777 9.70E-67 dispersed
Cmu03g2210 Cmu-Chr3:30608768 Cmu03g0742 Cmu-Chr3:1593010 9.40E-67 transposed
Cmu05g0856 Cmu-Chr5:7721747 Cmu03g0742 Cmu-Chr3:1593010 9.70E-78 transposed
Cmu07g1365 Cmu-Chr7:28946691 Cmu03g0742 Cmu-Chr3:1593010 1.90E-65 transposed
Cmu08g0943 Cmu-Chr8:21761824 Cmu03g0742 Cmu-Chr3:1593010 1.20E-64 transposed
Cmu09g0017 Cmu-Chr9:457258 Cmu03g0742 Cmu-Chr3:1593010 8.70E-07 transposed
Cmu09g0018 Cmu-Chr9:463197 Cmu03g0742 Cmu-Chr3:1593010 1.20E-19 transposed
Cmu11g0672 Cmu-Chr11:7393816 Cmu03g0742 Cmu-Chr3:1593010 4.80E-87 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu03g0742 K14497 - csv:101206871 706.827