Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu03g0752 ATGGGAGAGGAGGTGAAGATGGCCGAATATGAGAGCGGTGGTGGCGGTGACGATGAAAACTGTGCTCATGAGGAGCGAGTAGTTGAATGGGAAACGGGTTTGCCTGACGCCGACGATCTCACTCCTCTGTCTCAGACTTTGATTCCGCCGGAGCTTGCATCAGCATTCAGTATATCGACAGGGCCATGTCGGACACTGATGGATGTTAATCGAGCATCGCAGAATACGCTATCGAATCTTCGTGGATTTCAAGCACAAGCGTTTTCGTCAAATAATTTCAAGTCGTTTAATGATGATCGGAGTCGGGATCATGATCCAATGGTGGTTGAAGGAGATGAGGCAACGGAGAGGGATGCAGGGTCTGATTCTAGGAAATTGAGAAAGGTTGATTGTACGGAGGAGGCTGATTCGGCTCTTCGGATGGATAATTCAATGGATGATCCATCGGCTCGGACTTTGAAGAGACCGAGGCTTGTATGGACGCCGCAATTACACAAGCGGTTTGTGGATGTTGTTGCTCATCTTGGAATTAAGAACGCGGTTCCTAAAACTATTATGCAGTTAATGAATGTGGAGGGATTGACTCGGGAGAATGTTGCGAGTCATCTTCAGAAGTATAGGCTTTACTTGAAGAGGATGCAGGGATCTTCCAACGAAGGCCCGTCGTCGCCGGACCGGATTTTTGCGTCCACGCCTGTACCGCAGACCTTGCACGAGTCTACCAACAGTGGGCATGCCAATGGAAATGGGCATTTGCCAGTTCCAACTCCGATGCCGTATGGACCGCCAATGATGCCTATGCCGGTGCTTGGCATGGCAGCGTCTGGTCATGCACACAGTTATATGGGTATGCCGGTCGCTCATCCGGGAAGCGCACAGGCATACCCTGGCTTTGAAACGCATCCTTTCAACATGATGCATCAGAGAGATTGGTCGGGGAACAAATACGGCTCGATCGTGCCTTACCCTCATCCTCATGTACCTCCTAGTACTAATGATAAGTGA 1005 50.05 MGEEVKMAEYESGGGGDDENCAHEERVVEWETGLPDADDLTPLSQTLIPPELASAFSISTGPCRTLMDVNRASQNTLSNLRGFQAQAFSSNNFKSFNDDRSRDHDPMVVEGDEATERDAGSDSRKLRKVDCTEEADSALRMDNSMDDPSARTLKRPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKRMQGSSNEGPSSPDRIFASTPVPQTLHESTNSGHANGNGHLPVPTPMPYGPPMMPMPVLGMAASGHAHSYMGMPVAHPGSAQAYPGFETHPFNMMHQRDWSGNKYGSIVPYPHPHVPPSTNDK 334
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1658865 1659869 - CmPI595203_03g007520.1 Cmu03g0752 411538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu03g0752 334 Gene3D - 152 214 - -
Cmu03g0752 334 NCBIfam myb-like DNA-binding domain, SHAQKYF class 156 208 IPR006447 GO:0003677(InterPro)
Cmu03g0752 334 MobiDBLite consensus disorder prediction 96 130 - -
Cmu03g0752 334 MobiDBLite consensus disorder prediction 1 20 - -
Cmu03g0752 334 Pfam Myb-like DNA-binding domain 158 207 IPR001005 -
Cmu03g0752 334 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 160 211 IPR017930 -
Cmu03g0752 334 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 20 293 IPR044841 GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Cmu03g0752 334 SUPERFAMILY Homeodomain-like 152 212 IPR009057 -
Cmu03g0752 334 MobiDBLite consensus disorder prediction 94 130 - -
Cmu03g0752 334 FunFam Two-component response regulator 151 214 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu03g0752 Cmu-Chr3:1658865 Cmu04g0625 Cmu-Chr4:19965997 9.30E-39 dispersed
Cmu02g1993 Cmu-Chr2:33686100 Cmu03g0752 Cmu-Chr3:1658865 6.00E-66 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5863 PF00249 Myb_DNA-binding 1.40E-08 CL0123 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu03g0752 - - - 0.0