Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu03g0763 ATGGCTAAAACCGCCATTCTCCTCTGCATTGCGACTATCATTTCAACAATGTGGACGGCCGGCGCCAGAATTCCCGGCGTCTACTCCGGTGGCCCATGGGAGAGTGCCCATGCCACGTTCTACGGCGGCTCCGATGCCTCCGGCACAATGGGTGGAGCTTGTGGGTATGGGAACTTGTACAGCCAAGGGTACGGAGTGAACACGGCGGCGTTGAGTACGGCGCTGTTTAACAATGGGCTGAGCTGCGGCGCCTGTTTCGAAATCAAATGTGCAAATGACCCGAGATGGTGCCATTCCGGCAGCCCGTCGATTATTATTACGGCCACTAATTTCTGTCCGCCGAACTTTGCTTTGCCCAGTGACAATGGCGGATGGTGTAATCCTCCTCGCCCGCATTTCGATTTGGCTATGCCTATGTTTCTTAAAATCGCTGAGTATCGCGCCGGAATCGTCCCCGTCGCCTACCGCCGAGTGGCATGCCGGAAGCAAGGGGGGATCCGGTTCACAATCCACGGGTTCAGATACTTCAACTTGGTGTTAATCACCAACGTCGCGGGTGCAGGGGATATCGTGAAGGTGAGCGTGAAAGGCACGCGCACCGGTTGGATGAGCATGAGCCGTAACTGGGGTCAAAACTGGCAGTCAAACGCCGTGTTGGTGGGCCAGGCCTTGTCTTTTAGAGTCACAGGCAGCGACAGACGGACTTCCACCTCCTTCAACGTGGCGCCTTCTGATTGGCAGTTCGGTCAGACCTTCACCGGCAAGAATTTTAGGGTTTGA 780 55.77 MAKTAILLCIATIISTMWTAGARIPGVYSGGPWESAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANDPRWCHSGSPSIIITATNFCPPNFALPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVAYRRVACRKQGGIRFTIHGFRYFNLVLITNVAGAGDIVKVSVKGTRTGWMSMSRNWGQNWQSNAVLVGQALSFRVTGSDRRTSTSFNVAPSDWQFGQTFTGKNFRV 259
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1825738 1827482 + CmPI595203_03g007630.1 Cmu03g0763 411549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu03g0763 259 FunFam Expansin 22 161 - -
Cmu03g0763 259 CDD DPBB_EXPA_N 32 160 - -
Cmu03g0763 259 Gene3D - 21 161 IPR036908 -
Cmu03g0763 259 SMART dpbb_1 68 155 IPR007112 -
Cmu03g0763 259 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 175 254 IPR007117 -
Cmu03g0763 259 PANTHER EXPANSIN-A15 10 257 IPR002963 GO:0009664(InterPro)
Cmu03g0763 259 FunFam Expansin 165 257 - -
Cmu03g0763 259 Pfam Lytic transglycolase 68 155 IPR009009 -
Cmu03g0763 259 SUPERFAMILY Barwin-like endoglucanases 32 183 IPR036908 -
Cmu03g0763 259 SUPERFAMILY PHL pollen allergen 162 254 IPR036749 -
Cmu03g0763 259 Pfam Expansin C-terminal domain 166 243 IPR007117 -
Cmu03g0763 259 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 51 165 IPR007112 -
Cmu03g0763 259 Gene3D - 165 257 IPR036749 -
Cmu03g0763 259 PRINTS Expansin signature 140 153 IPR002963 GO:0009664(InterPro)
Cmu03g0763 259 PRINTS Expansin signature 164 176 IPR002963 GO:0009664(InterPro)
Cmu03g0763 259 PRINTS Expansin signature 90 101 IPR002963 GO:0009664(InterPro)
Cmu03g0763 259 PRINTS Expansin signature 104 114 IPR002963 GO:0009664(InterPro)
Cmu03g0763 259 PRINTS Expansin signature 123 140 IPR002963 GO:0009664(InterPro)
Cmu03g0763 259 PRINTS Expansin signature 176 197 IPR002963 GO:0009664(InterPro)
Cmu03g0763 259 PRINTS Expansin signature 211 232 IPR002963 GO:0009664(InterPro)
Cmu03g0763 259 PRINTS Expansin signature 63 77 IPR002963 GO:0009664(InterPro)
Cmu03g0763 259 PRINTS Expansin signature 240 256 IPR002963 GO:0009664(InterPro)
Cmu03g0763 259 PRINTS Expansin/Lol pI family signature 202 216 IPR007118 GO:0005576(InterPro)
Cmu03g0763 259 PRINTS Expansin/Lol pI family signature 72 90 IPR007118 GO:0005576(InterPro)
Cmu03g0763 259 PRINTS Expansin/Lol pI family signature 32 47 IPR007118 GO:0005576(InterPro)
Cmu03g0763 259 PRINTS Expansin/Lol pI family signature 240 254 IPR007118 GO:0005576(InterPro)
Cmu03g0763 259 PRINTS Expansin/Lol pI family signature 148 164 IPR007118 GO:0005576(InterPro)
Cmu03g0763 259 PRINTS Expansin/Lol pI family signature 50 68 IPR007118 GO:0005576(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu03g0763 Cmu-Chr3:1825738 Cmu05g2469 Cmu-Chr5:33667992 7.80E-102 dispersed
Cmu01g0824 Cmu-Chr1:9658926 Cmu03g0763 Cmu-Chr3:1825738 1.70E-75 transposed
Cmu02g0327 Cmu-Chr2:3007828 Cmu03g0763 Cmu-Chr3:1825738 1.40E-73 transposed
Cmu02g2002 Cmu-Chr2:33783402 Cmu03g0763 Cmu-Chr3:1825738 1.20E-137 wgd
Cmu03g0763 Cmu-Chr3:1825738 Cmu04g0854 Cmu-Chr4:23047064 5.40E-135 wgd
Cmu03g0763 Cmu-Chr3:1825738 Cmu07g0379 Cmu-Chr7:3820281 4.60E-134 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu03g0763 - - - 0.0