Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu03g0778 ATGAGCAAAAGCGCCGTTACAACAAACGTCAAAACTACTAACAAACAGCTTCTAAATCCGTCTTCTGCTATGGAGGAAGATAACGGCGCTCTTATTCAGAGTCTGATCGATGTAGTGAATGAGATTGCTTGGATCTCGGATTTTAGGTATACTGTTAAGAAGCAGTATTGTAATTTGTCCAGGAGATTGAAGCTTCTGATCCCAATGTTCGAAGAGATTAGAGACAGTAAAGAGCCTGTTTCTGAGGATACTCTTAACGCTCTCGTACTGTTGAAAGAAGCTCTCGAATCGGCTAAGAAGTTGCTCAGATTTGGAAGCGAAGGGAGCAAGATTTTCCTGGCCGTAGAGAGGGAGCAAATTATGAACAAATTTCATGAGGTAACTGCTCGGTTGGAACAAGCGTTGGAAGGAATAGCCTATGATAAACTTGATATATCCGATGAAGTTAAAGAGCAGGTTGAGCTTGTTCTTGCTCAGTTCAGAAGGGCCAAAGGCAGGGCCGATGCTCCTGACTCTGAGCTGTTGGATGATATCCTTGCCCTTTACAACACGAGCAATGATTCTTCTATAGATCAAGACCGCCTAAGGAGACTGTCCGAAAAATTACAGTTAGTTGGAATATCTGATCTTACACAAGAGTCAATAGCTTTGCATGAGATGGTTTCTGCTACTGATGGGGATCCAGGCGAGAGCATTGAGAAGATGGCAGGGCTGCTAAAGAAAATAAAAGATTTCGTGCAAACAGAGAGCCTCGAAACGGACACTCCTAGTAGAGAAAAGAGTCCTCCAGCAAGTTGTAGTGGACAGGTATCCAATGACAAAAATAACAAGGCCCCAATTATACCAGATGATTTTCGCTGCCCCATATCCCTGGAGTTGATGAGAGATCCTGTCATTGTCTCAACTGGACAGACCTATGAACGTTCCTGCATTGAGAAGTGGCTTGAAGCAGGGCATGGGACGTGTCCAAAGACACAACAAAACCTTTCAAGCACTACTCTTACCCCAAATTATGTGTTGCGTAGCCTTATAGCCCAATGGTGCGAGGCTAATGGTATCGAACCACCAAAACGACCCAGCAGTGCTCGACCATGTAGAAGCTCTTCATCTTGCTCACCTGCTGAACGCACAAAGATTGATATTCTTCTTTGCAAACTTGCATCTGGAAATCCTGAAGATCAACGATCTGCAGCTGGTGAGATCCGACTTCTTGCAAAACGGAACGCAGATAATCGCGTTGCTATTGCCGAGGCAGGTGCTATACCTCTCCTTGTCGGCCTTCTTTCAACTCCAGACTCCCGTGTTCAAGAGCATGCTGTAACAGCACTTCTTAACCTTTCTATATGCGAGGACAACAAGGGAAGCATCATTTCCTCTGGGGCAGTTCCTGGTATTGTTCTCGTGCTTAAGAAGGGGAGCATGGAAGCACGGGAAAATGCTGCAGCCACTCTTTTCAGCCTTTCGGTTGTTGATGAAAATAAAGTTAGGATTGGTGCCTCCGGAGCTATCCCGCCGCTTGTAACACTGCTTAGTGAAGGCACGCAAAGGGGTAAGAAAGATGCTGCAACTGCACTTTTCAACTTATGCATCTACCAAGGAAACAAAGGCAAGGCAGTTAGAGCTGGTGTAGTTCCAACCTTAATGCAGCTTCTCACTGAGCCCGGAACCGGAATGGTGGATGAAGCCTTAGCCATCTTAGCAATACTTGCTAGCCATCCTGAAGGGAAAGCTGCCATTGGATCCGCAAAGGCAGTGCCGGTTTTGGTAGGTGTTATTGGGACAGGATCCCCCAGGAACAGAGAGAATGCGGCTGCAGTTCTTGTGCACCTGTGCTCGGGAGACGAGCAACACCTAGTAGAGGCCAGGGAACTTGGAGTGATCAGTCCATTGATAGATTTGGCACGCAGTGGCACAGATAGAGGAAAGCGAAAAGCTGCACAGTTGCTTGAACGAATGAACCGACTGTTTGAGCACGCGGCGCATCAGGAGGAGCTTCGGGTGCTTCGGTTACAATCGTCGGAGTCTCAACCTCAAAGCCAGCCATCACAATCAACATCGACAACGGAAGTCGTTGGTAGCTGA 2082 46.93 MSKSAVTTNVKTTNKQLLNPSSAMEEDNGALIQSLIDVVNEIAWISDFRYTVKKQYCNLSRRLKLLIPMFEEIRDSKEPVSEDTLNALVLLKEALESAKKLLRFGSEGSKIFLAVEREQIMNKFHEVTARLEQALEGIAYDKLDISDEVKEQVELVLAQFRRAKGRADAPDSELLDDILALYNTSNDSSIDQDRLRRLSEKLQLVGISDLTQESIALHEMVSATDGDPGESIEKMAGLLKKIKDFVQTESLETDTPSREKSPPASCSGQVSNDKNNKAPIIPDDFRCPISLELMRDPVIVSTGQTYERSCIEKWLEAGHGTCPKTQQNLSSTTLTPNYVLRSLIAQWCEANGIEPPKRPSSARPCRSSSSCSPAERTKIDILLCKLASGNPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRVQEHAVTALLNLSICEDNKGSIISSGAVPGIVLVLKKGSMEARENAAATLFSLSVVDENKVRIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMQLLTEPGTGMVDEALAILAILASHPEGKAAIGSAKAVPVLVGVIGTGSPRNRENAAAVLVHLCSGDEQHLVEARELGVISPLIDLARSGTDRGKRKAAQLLERMNRLFEHAAHQEELRVLRLQSSESQPQSQPSQSTSTTEVVGS 693
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1954425 1959238 + CmPI595203_03g007780.1 Cmu03g0778 411564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu03g0778 693 FunFam RING-type E3 ubiquitin transferase 281 354 - -
Cmu03g0778 693 Pfam Armadillo/beta-catenin-like repeat 408 447 IPR000225 GO:0005515(InterPro)
Cmu03g0778 693 Pfam Armadillo/beta-catenin-like repeat 491 529 IPR000225 GO:0005515(InterPro)
Cmu03g0778 693 Pfam Armadillo/beta-catenin-like repeat 573 612 IPR000225 GO:0005515(InterPro)
Cmu03g0778 693 CDD RING-Ubox_PUB 282 334 IPR045210 -
Cmu03g0778 693 SMART Ubox_2 284 347 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cmu03g0778 693 SUPERFAMILY RING/U-box 278 357 - -
Cmu03g0778 693 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 281 354 IPR013083 -
Cmu03g0778 693 FunFam RING-type E3 ubiquitin transferase 364 515 - -
Cmu03g0778 693 FunFam RING-type E3 ubiquitin transferase 28 141 - -
Cmu03g0778 693 Pfam U-box domain 281 351 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cmu03g0778 693 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 542 584 IPR000225 GO:0005515(InterPro)
Cmu03g0778 693 MobiDBLite consensus disorder prediction 257 276 - -
Cmu03g0778 693 Gene3D - 563 680 IPR011989 -
Cmu03g0778 693 Pfam Mixed lineage kinase domain-like N-terminal domain 52 139 IPR054000 -
Cmu03g0778 693 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 419 461 IPR000225 GO:0005515(InterPro)
Cmu03g0778 693 Gene3D - 30 140 IPR036537 GO:0007166(InterPro)
Cmu03g0778 693 SUPERFAMILY ARM repeat 379 652 IPR016024 -
Cmu03g0778 693 ProSiteProfiles U-box domain profile. 280 354 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cmu03g0778 693 Gene3D - 369 562 IPR011989 -
Cmu03g0778 693 SMART arm_5 572 612 IPR000225 GO:0005515(InterPro)
Cmu03g0778 693 SMART arm_5 531 571 IPR000225 GO:0005515(InterPro)
Cmu03g0778 693 SMART arm_5 408 448 IPR000225 GO:0005515(InterPro)
Cmu03g0778 693 SMART arm_5 449 489 IPR000225 GO:0005515(InterPro)
Cmu03g0778 693 SMART arm_5 614 654 IPR000225 GO:0005515(InterPro)
Cmu03g0778 693 SMART arm_5 490 530 IPR000225 GO:0005515(InterPro)
Cmu03g0778 693 FunFam RING-type E3 ubiquitin transferase 555 673 - -
Cmu03g0778 693 PANTHER U BOX DOMAIN-CONTAINING 51 654 - -
Cmu03g0778 693 CDD MLKL_NTD 33 161 - -
Cmu03g0778 693 MobiDBLite consensus disorder prediction 249 279 - -
Cmu03g0778 693 MobiDBLite consensus disorder prediction 669 693 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g1377 Cmu-Chr1:27246352 Cmu03g0778 Cmu-Chr3:1954425 1.70E-10 dispersed
Cmu02g0992 Cmu-Chr2:15305227 Cmu03g0778 Cmu-Chr3:1954425 2.20E-81 dispersed
Cmu02g1246 Cmu-Chr2:25450651 Cmu03g0778 Cmu-Chr3:1954425 8.60E-12 dispersed
Cmu03g0778 Cmu-Chr3:1954425 Cmu05g2175 Cmu-Chr5:31213570 2.00E-115 dispersed
Cmu06g0911 Cmu-Chr6:12631594 Cmu03g0778 Cmu-Chr3:1954425 2.30E-16 transposed
Cmu11g1389 Cmu-Chr11:26082089 Cmu03g0778 Cmu-Chr3:1954425 1.20E-36 transposed
Cmu02g2020 Cmu-Chr2:33917099 Cmu03g0778 Cmu-Chr3:1954425 3.10E-163 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu03g0778 K27628 - csv:101218572 1145.18