Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu03g0779 ATGGATTTCTCTTCTGTTCCAATCTATTTAGATCCTCCTCCCAATTGGCACCAGCAATCAAATCATCATCATCACCACCATCCTCAGATAAGTAGTAATAATAATGGATCTCCTCAACACCAACACCACCTTCTTTCATTGCCTACTCAGCAACTCTCCTCCTCACCGTTGTCTCATGTCGGTGGTGGCGGTGGTGTTAGCTCAATCCGGCGTGGTTCGATGGCGGACCGAGCTCGGATGGCTAACGTACCACTACCGGAGACAGCACTCAAGTGTCCTCGATGTGATTCAACCAACACGAAGTTTTGTTACTTTAATAACTATAGTCTCTCTCAGCCTCGCCACTTTTGTAAGAGCTGCCGCCGATATTGGACTCGTGGGGGTGCCCTAAGGAACGTTCCAGTTGGGGGCGGTTGTCGCCGGAATAAGAAGAATAAAACTAGACGCTCGAAGTCTCCGGCTGCAGCTCCGGCCGGAAATGAAACTCAAGTGATGAATAACAATTCAAACTCACCCACCACTACTACAATACCCTTGCACAGTAGTGCTGAGAATATTATTGGTCATTTACAGCCTCAACATCCTCACCTTTCATTCATGGCTTCATTGAATAATTTTTCTCGATACGGGACAACGAGTTTAGGGTTGAATTTCAACGAGATCCAGGCTCAAGGTAACGATATCGGCAACGGCGCCCTTCTGAATCATCATCTGTGGCGTGGTTCCCAAAACTTTCCTCTCTCAGGTGGCCTAGAAACTCCACCCGGGTTGTACCCGTTTCAAATTAGCGGCGGGGACGGCGACGACAACACAACAAATTCAATCCTAACACCAAATTCAAGGGCAACCCATTTGCCTCCAGTGAAGATTGAAGAAACCCAAGTGCTGAATTTGTTGAAATCATCCAATTTGGGTATCAATAATTCTGAAAACAATCAATTTTGGAGCAATGGAAATGAAGCCCCTATTGATCAGATCATCATCTTCAAATTGGCATCTCTCAGCTCACAGCTTTGTAGCACTCTTCTAGCTCTCTTCAGCTTCTGA 1047 46.23 MDFSSVPIYLDPPPNWHQQSNHHHHHHPQISSNNNGSPQHQHHLLSLPTQQLSSSPLSHVGGGGGVSSIRRGSMADRARMANVPLPETALKCPRCDSTNTKFCYFNNYSLSQPRHFCKSCRRYWTRGGALRNVPVGGGCRRNKKNKTRRSKSPAAAPAGNETQVMNNNSNSPTTTTIPLHSSAENIIGHLQPQHPHLSFMASLNNFSRYGTTSLGLNFNEIQAQGNDIGNGALLNHHLWRGSQNFPLSGGLETPPGLYPFQISGGDGDDNTTNSILTPNSRATHLPPVKIEETQVLNLLKSSNLGINNSENNQFWSNGNEAPIDQIIIFKLASLSSQLCSTLLALFSF 348
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1974577 1976062 + CmPI595203_03g007790.1 Cmu03g0779 411565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu03g0779 348 Pfam Dof domain, zinc finger 89 144 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Cmu03g0779 348 MobiDBLite consensus disorder prediction 11 43 - -
Cmu03g0779 348 ProSitePatterns Zinc finger Dof-type signature. 92 128 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Cmu03g0779 348 MobiDBLite consensus disorder prediction 156 171 - -
Cmu03g0779 348 ProSiteProfiles Zinc finger Dof-type profile. 90 144 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Cmu03g0779 348 MobiDBLite consensus disorder prediction 135 171 - -
Cmu03g0779 348 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 85 202 IPR045174 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu03g0779 Cmu-Chr3:1974577 Cmu07g0371 Cmu-Chr7:3678771 7.90E-41 dispersed
Cmu10g2821 Cmu-Chr10:34753018 Cmu03g0779 Cmu-Chr3:1974577 6.60E-40 wgd
Cmu02g2021 Cmu-Chr2:33927175 Cmu03g0779 Cmu-Chr3:1974577 5.20E-37 wgd
Cmu02g2076 Cmu-Chr2:34451660 Cmu03g0779 Cmu-Chr3:1974577 5.20E-29 wgd
Cmu03g0779 Cmu-Chr3:1974577 Cmu04g0866 Cmu-Chr4:23198980 1.00E-35 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5865 PF02701 zf-Dof 1.50E-32 No_clan Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu03g0779 - - - 0.0