Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmu03g0779 | ATGGATTTCTCTTCTGTTCCAATCTATTTAGATCCTCCTCCCAATTGGCACCAGCAATCAAATCATCATCATCACCACCATCCTCAGATAAGTAGTAATAATAATGGATCTCCTCAACACCAACACCACCTTCTTTCATTGCCTACTCAGCAACTCTCCTCCTCACCGTTGTCTCATGTCGGTGGTGGCGGTGGTGTTAGCTCAATCCGGCGTGGTTCGATGGCGGACCGAGCTCGGATGGCTAACGTACCACTACCGGAGACAGCACTCAAGTGTCCTCGATGTGATTCAACCAACACGAAGTTTTGTTACTTTAATAACTATAGTCTCTCTCAGCCTCGCCACTTTTGTAAGAGCTGCCGCCGATATTGGACTCGTGGGGGTGCCCTAAGGAACGTTCCAGTTGGGGGCGGTTGTCGCCGGAATAAGAAGAATAAAACTAGACGCTCGAAGTCTCCGGCTGCAGCTCCGGCCGGAAATGAAACTCAAGTGATGAATAACAATTCAAACTCACCCACCACTACTACAATACCCTTGCACAGTAGTGCTGAGAATATTATTGGTCATTTACAGCCTCAACATCCTCACCTTTCATTCATGGCTTCATTGAATAATTTTTCTCGATACGGGACAACGAGTTTAGGGTTGAATTTCAACGAGATCCAGGCTCAAGGTAACGATATCGGCAACGGCGCCCTTCTGAATCATCATCTGTGGCGTGGTTCCCAAAACTTTCCTCTCTCAGGTGGCCTAGAAACTCCACCCGGGTTGTACCCGTTTCAAATTAGCGGCGGGGACGGCGACGACAACACAACAAATTCAATCCTAACACCAAATTCAAGGGCAACCCATTTGCCTCCAGTGAAGATTGAAGAAACCCAAGTGCTGAATTTGTTGAAATCATCCAATTTGGGTATCAATAATTCTGAAAACAATCAATTTTGGAGCAATGGAAATGAAGCCCCTATTGATCAGATCATCATCTTCAAATTGGCATCTCTCAGCTCACAGCTTTGTAGCACTCTTCTAGCTCTCTTCAGCTTCTGA | 1047 | 46.23 | MDFSSVPIYLDPPPNWHQQSNHHHHHHPQISSNNNGSPQHQHHLLSLPTQQLSSSPLSHVGGGGGVSSIRRGSMADRARMANVPLPETALKCPRCDSTNTKFCYFNNYSLSQPRHFCKSCRRYWTRGGALRNVPVGGGCRRNKKNKTRRSKSPAAAPAGNETQVMNNNSNSPTTTTIPLHSSAENIIGHLQPQHPHLSFMASLNNFSRYGTTSLGLNFNEIQAQGNDIGNGALLNHHLWRGSQNFPLSGGLETPPGLYPFQISGGDGDDNTTNSILTPNSRATHLPPVKIEETQVLNLLKSSNLGINNSENNQFWSNGNEAPIDQIIIFKLASLSSQLCSTLLALFSF | 348 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 1974577 | 1976062 | + | CmPI595203_03g007790.1 | Cmu03g0779 | 411565 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmu03g0779 | 348 | Pfam | Dof domain, zinc finger | 89 | 144 | IPR003851 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
Cmu03g0779 | 348 | MobiDBLite | consensus disorder prediction | 11 | 43 | - | - | |
Cmu03g0779 | 348 | ProSitePatterns | Zinc finger Dof-type signature. | 92 | 128 | IPR003851 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
Cmu03g0779 | 348 | MobiDBLite | consensus disorder prediction | 156 | 171 | - | - | |
Cmu03g0779 | 348 | ProSiteProfiles | Zinc finger Dof-type profile. | 90 | 144 | IPR003851 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
Cmu03g0779 | 348 | MobiDBLite | consensus disorder prediction | 135 | 171 | - | - | |
Cmu03g0779 | 348 | PANTHER | DOF ZINC FINGER PROTEIN DOF1.4-RELATED | 85 | 202 | IPR045174 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmu03g0779 | Cmu-Chr3:1974577 | Cmu07g0371 | Cmu-Chr7:3678771 | 7.90E-41 | dispersed | |
Cmu10g2821 | Cmu-Chr10:34753018 | Cmu03g0779 | Cmu-Chr3:1974577 | 6.60E-40 | wgd | |
Cmu02g2021 | Cmu-Chr2:33927175 | Cmu03g0779 | Cmu-Chr3:1974577 | 5.20E-37 | wgd | |
Cmu02g2076 | Cmu-Chr2:34451660 | Cmu03g0779 | Cmu-Chr3:1974577 | 5.20E-29 | wgd | |
Cmu03g0779 | Cmu-Chr3:1974577 | Cmu04g0866 | Cmu-Chr4:23198980 | 1.00E-35 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
5865 | PF02701 | zf-Dof | 1.50E-32 | No_clan | Cmu | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmu03g0779 | - | - | - | 0.0 |