Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu03g0832 ATGGGTTGCTTTCGTTGTACCGGTTCATCCAGCAAGAAATCGGAGAACATCGAAGAAAACAACCCCCATACCTTCAATTCCAAAACCCACAAGCCCGTTGATCGAACGCCTTCAGATAAAGCCAAAGTAAATTCAAGTTTGGCAGTGAAGAGGGATTCTGATGTGAAGGTGGTTGTGACAAAAGATGACCAATTGGCTTTAGATGTAAAGAAATTGAATTTAAAAGATGAGGTTTCTGAGGAAGGAGAATCCAATGGCCGTGCCAAGACTTTTACGTTTGAAGAACTCGCTGCTGCGACGGGCAATTTCAGGTCAGATTGCTTCTTGGGTGAAGGAGGATTTGGCAAAGTTTACAAGGGGTACTTGCAGAAAGTTAATGAGGTTGTAGCAATCAAACAACTTGACCGCAATGGACTTCAAGGAATTCGAGAGTTTGTTGTCGAAGTCTTGACTTTAAGTCTAGCTGATCATCCTAACCTTGTAAAACTTATTGGCTTTTGTGCTGAGGGGGATCAGAGGTTGTTGGTTTATGAATATATGCCATTGGGATCATTGGAAAACCATTTACACGATCTTCGACCCGGTGCAAAAGTAATTGATTGGAACACAAGAATGAAAATAGCAGCAGGTGCAGCGAGGGGGTTGGAGTATTTGCATGAGAAGATGAAGCCTCCAGTTATATATCGTGATCTGAAATGTTCAAACATTTTGCTCGGTGAAGGATATCATCCGAAGCTATCTGATTTTGGATTGGCTAAAGTAGGTCCTAGTGGGGATAAAACCCACGTTTCAACCAGGGTTATGGGCACATATGGGTATTGTGCTCCAGATTATGCAATGACGGGCCAACTGACATTCAAATCAGATATTTACAGCTTTGGCGTTGTTTTATTGGAACTCATCACGGGCAGGAAAGCAATCGATCATTCAAAACCTCATTCAGAGCAAAATCTTGTGGCTTGGGCGCGACCTTTGTTCCGAGACCGGAAGAAGTTCTCACAAATGGTTGATCCATTGCTCCAAGGACAATATCCAGTGAGAGGATTATACCAATCTCTAGCCATAGCCGCAATGTGTGTTCAGGAGCAACCGAATATGCGGCCAGTTATATCTGATGTGGTAACCGCCTTAAACTACCTGGCTTCCCAGAAATATGATCCCCAATCTCAACCAAACCATAGCTCCCAAAAGAGACCATCTTCTCTTAAAATGGAACGGAATGATGATAAGAGGGAACGGGACGATGATAAGAGGGAAACTTCAGACAACGAGGGGTCAGAGAGAGAGAGTGAGACAGGAGAGAATACATTGTAG 1314 43.46 MGCFRCTGSSSKKSENIEENNPHTFNSKTHKPVDRTPSDKAKVNSSLAVKRDSDVKVVVTKDDQLALDVKKLNLKDEVSEEGESNGRAKTFTFEELAAATGNFRSDCFLGEGGFGKVYKGYLQKVNEVVAIKQLDRNGLQGIREFVVEVLTLSLADHPNLVKLIGFCAEGDQRLLVYEYMPLGSLENHLHDLRPGAKVIDWNTRMKIAAGAARGLEYLHEKMKPPVIYRDLKCSNILLGEGYHPKLSDFGLAKVGPSGDKTHVSTRVMGTYGYCAPDYAMTGQLTFKSDIYSFGVVLLELITGRKAIDHSKPHSEQNLVAWARPLFRDRKKFSQMVDPLLQGQYPVRGLYQSLAIAAMCVQEQPNMRPVISDVVTALNYLASQKYDPQSQPNHSSQKRPSSLKMERNDDKRERDDDKRETSDNEGSERESETGENTL 437
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2664692 2667535 + CmPI595203_03g008320.1 Cmu03g0832 411618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu03g0832 437 Gene3D Phosphorylase Kinase; domain 1 71 179 - -
Cmu03g0832 437 MobiDBLite consensus disorder prediction 1 44 - -
Cmu03g0832 437 SMART serkin_6 103 380 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu03g0832 437 MobiDBLite consensus disorder prediction 384 398 - -
Cmu03g0832 437 ProSitePatterns Serine/Threonine protein kinases active-site signature. 226 238 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu03g0832 437 Gene3D Transferase(Phosphotransferase) domain 1 180 407 - -
Cmu03g0832 437 ProSitePatterns Protein kinases ATP-binding region signature. 109 132 IPR017441 GO:0005524(InterPro)
Cmu03g0832 437 PANTHER OS07G0668900 PROTEIN 52 405 - -
Cmu03g0832 437 MobiDBLite consensus disorder prediction 399 437 - -
Cmu03g0832 437 CDD STKc_IRAK 109 378 - -
Cmu03g0832 437 SUPERFAMILY Protein kinase-like (PK-like) 89 398 IPR011009 -
Cmu03g0832 437 MobiDBLite consensus disorder prediction 384 437 - -
Cmu03g0832 437 Pfam Protein kinase domain 108 320 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu03g0832 437 FunFam probable serine/threonine-protein kinase RLCKVII 75 179 - -
Cmu03g0832 437 FunFam Serine/threonine-protein kinase PBS1 180 396 - -
Cmu03g0832 437 ProSiteProfiles Protein kinase domain profile. 103 380 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu03g0832 437 MobiDBLite consensus disorder prediction 16 38 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu03g0832 Cmu-Chr3:2664692 Cmu10g2786 Cmu-Chr10:34455541 1.30E-144 dispersed
Cmu02g2065 Cmu-Chr2:34297523 Cmu03g0832 Cmu-Chr3:2664692 6.50E-150 wgd
Cmu02g2118 Cmu-Chr2:34837239 Cmu03g0832 Cmu-Chr3:2664692 1.40E-55 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75367 PF00069 Pkinase 6.00E-44 CL0016 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu03g0832 - - - 0.0