Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu03g0856 ATGGAGAAAAATGAGGCACATACGGTGGCGGTGGGTAGTCCGTGTGCGGCTTGTAAAATTCTCCGGCGAAGATGCCGAGAGAATTGCGAATTGGGGCCGTATTTTCCTCCAACGGAACCTCTCAAATTCACTATTGCTCATAGGGTCTTCGGTGCTAGCAACATCATCAAATTGCTTCAGGATCTTCTTAAGTCGCAAAGAGCAGATGCTGTGAACAGTATGGTATATGAGGCAAGTGCAAGAATAAGAGATCCAATTTATGGATGTGCTGGCTCAATTTTCCAACTCCAAAAACAAATAAATGACCTACAAGGAGAGTTAGCCAAGGCTCAAGCAGAGGTTCTCAAAATGCAATGTCAACAAGCCAATTTGATGACTCTAATTTGCAAGGAATTGGCTCAAATGCCACAACCACCAATGTATGATCATCAACCACTTAATCAAAATTACAACATTTCTAGCCCTCAAAGTTATCAAACCTATTCATACTTATTTGAGGAGGGTAATATTTTGGAGCCTCTTTGGACTTGA 531 41.81 MEKNEAHTVAVGSPCAACKILRRRCRENCELGPYFPPTEPLKFTIAHRVFGASNIIKLLQDLLKSQRADAVNSMVYEASARIRDPIYGCAGSIFQLQKQINDLQGELAKAQAEVLKMQCQQANLMTLICKELAQMPQPPMYDHQPLNQNYNISSPQSYQTYSYLFEEGNILEPLWT 176
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3070977 3072484 - CmPI595203_03g008560.1 Cmu03g0856 411642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu03g0856 176 Pfam Lateral organ boundaries (LOB) domain 14 111 IPR004883 -
Cmu03g0856 176 Coils Coil 93 120 - -
Cmu03g0856 176 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 13 142 - -
Cmu03g0856 176 ProSiteProfiles LOB domain profile. 13 114 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu03g0856 Cmu-Chr3:3070977 Cmu07g0502 Cmu-Chr7:5808766 2.50E-35 dispersed
Cmu03g0856 Cmu-Chr3:3070977 Cmu03g0858 Cmu-Chr3:3099391 8.90E-65 proximal
Cmu02g2081 Cmu-Chr2:34495487 Cmu03g0856 Cmu-Chr3:3070977 1.00E-45 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5872 PF03195 LOB 4.90E-38 No_clan Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu03g0856 - - - 0.0