Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmu03g0856 | ATGGAGAAAAATGAGGCACATACGGTGGCGGTGGGTAGTCCGTGTGCGGCTTGTAAAATTCTCCGGCGAAGATGCCGAGAGAATTGCGAATTGGGGCCGTATTTTCCTCCAACGGAACCTCTCAAATTCACTATTGCTCATAGGGTCTTCGGTGCTAGCAACATCATCAAATTGCTTCAGGATCTTCTTAAGTCGCAAAGAGCAGATGCTGTGAACAGTATGGTATATGAGGCAAGTGCAAGAATAAGAGATCCAATTTATGGATGTGCTGGCTCAATTTTCCAACTCCAAAAACAAATAAATGACCTACAAGGAGAGTTAGCCAAGGCTCAAGCAGAGGTTCTCAAAATGCAATGTCAACAAGCCAATTTGATGACTCTAATTTGCAAGGAATTGGCTCAAATGCCACAACCACCAATGTATGATCATCAACCACTTAATCAAAATTACAACATTTCTAGCCCTCAAAGTTATCAAACCTATTCATACTTATTTGAGGAGGGTAATATTTTGGAGCCTCTTTGGACTTGA | 531 | 41.81 | MEKNEAHTVAVGSPCAACKILRRRCRENCELGPYFPPTEPLKFTIAHRVFGASNIIKLLQDLLKSQRADAVNSMVYEASARIRDPIYGCAGSIFQLQKQINDLQGELAKAQAEVLKMQCQQANLMTLICKELAQMPQPPMYDHQPLNQNYNISSPQSYQTYSYLFEEGNILEPLWT | 176 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 3070977 | 3072484 | - | CmPI595203_03g008560.1 | Cmu03g0856 | 411642 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmu03g0856 | 176 | Pfam | Lateral organ boundaries (LOB) domain | 14 | 111 | IPR004883 | - | |
Cmu03g0856 | 176 | Coils | Coil | 93 | 120 | - | - | |
Cmu03g0856 | 176 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 13 | 142 | - | - | |
Cmu03g0856 | 176 | ProSiteProfiles | LOB domain profile. | 13 | 114 | IPR004883 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmu03g0856 | Cmu-Chr3:3070977 | Cmu07g0502 | Cmu-Chr7:5808766 | 2.50E-35 | dispersed | |
Cmu03g0856 | Cmu-Chr3:3070977 | Cmu03g0858 | Cmu-Chr3:3099391 | 8.90E-65 | proximal | |
Cmu02g2081 | Cmu-Chr2:34495487 | Cmu03g0856 | Cmu-Chr3:3070977 | 1.00E-45 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
5872 | PF03195 | LOB | 4.90E-38 | No_clan | Cmu | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmu03g0856 | - | - | - | 0.0 |