Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu03g0858 ATGGAGTCCAGTGAGCCAAAATCCAGCCCAACTTCAACTAACCTCCTTTCTCAGTCGTCGCCGTCGTCTCCTTCACCACCGCCGAGTGTTCAGGCCGCCGTGGTGGTCAGTCCGTGTGCGGCGTGCAAGATTCTGAGGCGGAGATGCGCAGAGAAATGCGTATTAGCGCCCTATTTTCCTCCCTCTGATCCTCTCAAATTCACCATTGCTCACCGTGTCTTCGGCGCTAGCAACATCATCAAATTGCTTCAGGATCTTCCTGATTCACAAAGGGCTGATGCAGTGAGTAGTTTAGTGTATGAAGCAAGTGCAAGAATTAGAGATCCAGTTTATGGATGTGCAGGGGCCATTTGCCAGCTTCAGAAACAGATAAACGAATTGCAAGCAGAACTAGCCAAGACACAGGCTGAGCTTGTCAATATCCACTGCCACCAAGCCAATTTGGTGGCTCTGATTTGCAAGGAGTTAGCCCAAACGCCGCCACCGATGTCGCCACTGCCGGACCACCGCTCACTTGACAACAATTTCAACATTGCCACACCTCAGAGCTACCAAGGCTACACATCTTTGTTTGAGGATAGCAATATTTGGGACCCTCTTTGGACATGA 609 50.41 MESSEPKSSPTSTNLLSQSSPSSPSPPPSVQAAVVVSPCAACKILRRRCAEKCVLAPYFPPSDPLKFTIAHRVFGASNIIKLLQDLPDSQRADAVSSLVYEASARIRDPVYGCAGAICQLQKQINELQAELAKTQAELVNIHCHQANLVALICKELAQTPPPMSPLPDHRSLDNNFNIATPQSYQGYTSLFEDSNIWDPLWT 202
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3099391 3100403 + CmPI595203_03g008580.1 Cmu03g0858 411644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu03g0858 202 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 36 158 - -
Cmu03g0858 202 MobiDBLite consensus disorder prediction 1 29 - -
Cmu03g0858 202 Coils Coil 117 144 - -
Cmu03g0858 202 MobiDBLite consensus disorder prediction 1 20 - -
Cmu03g0858 202 ProSiteProfiles LOB domain profile. 37 138 IPR004883 -
Cmu03g0858 202 Pfam Lateral organ boundaries (LOB) domain 38 135 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g1382 Cmu-Chr2:27498237 Cmu03g0858 Cmu-Chr3:3099391 2.20E-50 dispersed
Cmu02g2081 Cmu-Chr2:34495487 Cmu03g0858 Cmu-Chr3:3099391 2.40E-55 dispersed
Cmu03g0858 Cmu-Chr3:3099391 Cmu07g0502 Cmu-Chr7:5808766 9.00E-37 dispersed
Cmu03g0856 Cmu-Chr3:3070977 Cmu03g0858 Cmu-Chr3:3099391 8.90E-65 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5873 PF03195 LOB 4.50E-41 No_clan Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu03g0858 - - - 0.0