Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu03g0906 ATGAGAGCTATCATATTGAATTCAGATTTGAGATCAGTTTTACGTCCAAACGTCAGCTTCAACTTGCTTCCCGGCTCTGATGGTAAATACGATATTGCTTTTTATGGTTTATCGCAACATGTGGGGGAGTTAACAAGGAACTCTGATGAACAATTGAGCTTTCACAACTCCGAGCATTTGGGGCTTGATCTGGATCTTGTTAGAATTCAAAGTTATAACAAGGATGCGATTTTGACTCATGATCACTTGTCTTCGTTACCCTCAGAAATGATCAATTTCTCGAGAGATTCCAATGTTTTATCGCACCAAAGGGACATGATGTTGCGTCAAGAATTGGAAGACCCAGCTCAATCCAGTAGACAAATTGTGACAGATGCCTCTGGTGGAATTGTAAGTAATAGTGTTGATTATTGGAAAAGCTCTCATCAAAGCTGTGATTGGGTGGTGAACTGTGGAAGTAATTCTTTTGGAGGTGAAATGTTGAATCAGGAAGTAACTGATTCTACAGTGTATTCACTGAAGCCAACTTGCATTGGATTCCAAACTTCTTCCTCTTTTAATAATCCATCCAACGAGACATTCAATCAGGATGGACAAAAGCGTATAGGAGGAGAATTGCATTTGCCTCCAATTTACCAAAATACCCTTCAGGATGTTGTTACATCAGCCTCCATTCGAACTCAGGGCCTGGAAATGGCATCCATTGTGCAGCATAATTTCACTGAAATTAACCAGACTGCTGCTTGTGAAGGCAGTGGGAATGAGCTTGCTCTTCTTCCAGTGTACAGGGATCAGTCAAATGTGTTGCCTTATGACAGTACTGGTTCTTGGACTGATAGAACTTTCTATAATTGCCGCAGCTGGATTGGTGAATTGGGCTCTATTGCTAGAAAAACCGATGAAGAGTTAAGGACTTTTATGAGTGATTCCAATCCACAAGGTCTATCCCTGTCGCTGTCTTCGAATCCCCCGTCTAAATTGCCCACCACACAGTTCGTAGAATCAGAGGAATTACAGGAAAGTATCACTGTGTTAAAAAATACCCAAGAATCCAAAACAGTCAAATCTGAGAATTTGTGTAGATTACCAAAGCCAACATCTATTGGTAATAAAAATTATGGGAAATCTCTTCAAGATGTGATGGGAGTTCCTGTCAATCCATATAGAAACACAGGTCCTCTTGGTCCCTTTACTGGGTATGCAACCATTTTAAAGAGTTCAAAATTCTTAAAGCCTGCCCAACTGTTGTTAGATGAATTTTGTGGCTCAAGTGGTCATTATAAGTTTTTCCAACCATGTGAGGTATTTGAGAAGACACCTGGGGAAGTTGGTGTCTCAGCGGCCCTTAATGCATTTAGAAATGAGGCTGTTAAGGAAAATAGTTCGTGTGCAGATGCCTCTACATTCTGCGGTTCGAATGAATCAAATGTTAGTGGAGTTGGGAGCATCTCTTCTGAATCTCATCAACCGGAGTATCAGCAAAAGAAAGCAAAACTTCTATATATGCTCGAGGAGGTTTGCAGAAGATACAAACAATATCATCAGCAAATGCAAATGGTAGTTTCATCCTTCGAATCAGTAGCTGGTCTTAGTTCTGCGACACCCTACATTTCCCTGGCACTCAAGACAGTCTCAAGACACTTCCGGTCTCTGAAGAATGCCATCTCGGAGCAACTGAAGTATCTGAGGAAGGTACTTGGTGAGGATTTGTCATCCCCCTCTGCTGGGACAAGCGGCAGCAAAGGTGGTGATGCAAATTCGGTTAGGTTGAAATACATGGAACAGAGCTTCCAGAAGCAAAAATCTGGCATTGTCAATATTGGATTCCTTGAATCCCAAAATGCATGGAGGCCACAGAGAGGGTTGCCTGAACGTGCTGTGGCAATTCTTAGAGCCTGGCTCTTTGAGCATTTTCTTCACCCATACCCCACAGACACAGATAAACACATGTTGGCCACTCAAACAGGTCTATCTCGAAACCAGGTGTCAAATTGGTTCATAAATGCCCGAGTGCGGGTGTGGAAGCCAATGGTTGAAGAGATACACATGCTAGAAACCAAGGGCATGGCAGAAATGAACAACAAAAGCCATGGTATGAGAGATGGAAGTTCTACATTAGAGAAGACTGCCGGTTGGACCAGTAGTGAACGCCAGCCTCTAAAAAACCATGGTGTTACAAATGAAATGGCTAGTCATCATTTGCAGTGCTTTGGGGTAGATTCCTTAAGTGGCGACAGAAATGGACTCGGCTGCAGCGACCAACAGTGGGATCAAGGCAAACAATCCAAATTGGACAATGGGGTTCAGTCCAACATGGAAGGGGAACTGATGGGGTTCATGCCATATCAAGCCAGTGCAGCTGAGGTTGGAGGACTTGGAGCTGTCTCTCTAACATTAGGCCTTCGCCATCGAGTTGAGAGTGCCCACCATGAACAGGAGCGGCATCAAATGCAGCAACAAGATGACCAACTAATACGCCACTATGGAAGCGAAATGATCCATGATTTTGTGGGGAGCCCAAGTCGCTGTTCGAGGGTTCAGAAAGTTGAAACAGCTCTCGGCAATCTCTCCATATCTCAGATGAAAAAACCTGTTATTATGTTGCTTCTGAAAGAACAATACACTCTTTTGAAAAGAGCATTCTACAATGAGCAGAGACGCATTGGTGATAACTTCAGCGGCTATAATGAATATATTCTCTTCGGCTTTTCTATTCTAAGACATGTTATTTAG 2733 42.88 MRAIILNSDLRSVLRPNVSFNLLPGSDGKYDIAFYGLSQHVGELTRNSDEQLSFHNSEHLGLDLDLVRIQSYNKDAILTHDHLSSLPSEMINFSRDSNVLSHQRDMMLRQELEDPAQSSRQIVTDASGGIVSNSVDYWKSSHQSCDWVVNCGSNSFGGEMLNQEVTDSTVYSLKPTCIGFQTSSSFNNPSNETFNQDGQKRIGGELHLPPIYQNTLQDVVTSASIRTQGLEMASIVQHNFTEINQTAACEGSGNELALLPVYRDQSNVLPYDSTGSWTDRTFYNCRSWIGELGSIARKTDEELRTFMSDSNPQGLSLSLSSNPPSKLPTTQFVESEELQESITVLKNTQESKTVKSENLCRLPKPTSIGNKNYGKSLQDVMGVPVNPYRNTGPLGPFTGYATILKSSKFLKPAQLLLDEFCGSSGHYKFFQPCEVFEKTPGEVGVSAALNAFRNEAVKENSSCADASTFCGSNESNVSGVGSISSESHQPEYQQKKAKLLYMLEEVCRRYKQYHQQMQMVVSSFESVAGLSSATPYISLALKTVSRHFRSLKNAISEQLKYLRKVLGEDLSSPSAGTSGSKGGDANSVRLKYMEQSFQKQKSGIVNIGFLESQNAWRPQRGLPERAVAILRAWLFEHFLHPYPTDTDKHMLATQTGLSRNQVSNWFINARVRVWKPMVEEIHMLETKGMAEMNNKSHGMRDGSSTLEKTAGWTSSERQPLKNHGVTNEMASHHLQCFGVDSLSGDRNGLGCSDQQWDQGKQSKLDNGVQSNMEGELMGFMPYQASAAEVGGLGAVSLTLGLRHRVESAHHEQERHQMQQQDDQLIRHYGSEMIHDFVGSPSRCSRVQKVETALGNLSISQMKKPVIMLLLKEQYTLLKRAFYNEQRRIGDNFSGYNEYILFGFSILRHVI 910
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3686220 3692155 + CmPI595203_03g009060.1 Cmu03g0906 411692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu03g0906 910 Pfam Associated with HOX 403 556 IPR006563 -
Cmu03g0906 910 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 339 707 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cmu03g0906 910 Pfam Homeobox KN domain 633 672 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Cmu03g0906 910 Gene3D - 619 681 - -
Cmu03g0906 910 ProSiteProfiles 'Homeobox' domain profile. 613 676 IPR001356 GO:0003677(InterPro)
Cmu03g0906 910 MobiDBLite consensus disorder prediction 308 328 - -
Cmu03g0906 910 FunFam BEL1-like homeodomain protein 9 619 681 - -
Cmu03g0906 910 SMART HOX_1 616 680 IPR001356 GO:0003677(InterPro)
Cmu03g0906 910 SUPERFAMILY Homeodomain-like 617 682 IPR009057 -
Cmu03g0906 910 CDD homeodomain 616 677 IPR001356 GO:0003677(InterPro)
Cmu03g0906 910 SMART prehox3 398 557 IPR006563 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu03g0906 Cmu-Chr3:3686220 Cmu11g0411 Cmu-Chr11:4532079 2.10E-61 dispersed
Cmu03g0906 Cmu-Chr3:3686220 Cmu10g2865 Cmu-Chr10:35069980 8.70E-63 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5877 PF07526 POX 1.30E-42 No_clan Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu03g0906 - - - 0.0