Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu03g0940 ATGGCACCGCCTACAGTCCCTCTCTCTCTCCTCTCCCTCTTCCTCTTCTCCGTCTCTCTATCCGCCGCTCTCTCCGCTGCCCCTGCCGCCGTTCCCAACCCTGAACTCGTCGTACAAGAAGTACACAGAAGCATAATCAATGCGACGAAGAGGAGGAATTTAGGGTATCTCTCATGTGGGACTGGAAATCCAATCGACGATTGCTGGCGGTGCGATCCCAATTGGGAGAAAAATCGTCAGAGACTAGCCGACTGTGGGATTGGATTCGGCAAAAACGCCATTGGCGGTCGCGACGGCCAAATCTACGTCGTCACTGACTCCGGCGACGATGATCCAGTTAACCCTAAACCAGGAACTCTCCGTTACGCCGTAATCCAAGATGAACCCCTCTGGATCATCTTCGCTCGCGATATGGTGATTCGATTGAAAGAAGAACTGATTATGAATTCCTTCAAAACCATCGACGGCCGTGGCGCTAGCGTCCATATCGCCGGTGGGCCTTGCATTACCATTCAGTACGTGACAAACATTATAATCCATGGTCTCAACATTCACGACTGTAAGCCAGGGGGAAACACGGACGTGAGAGATTCCCCTCGACATTTCGGATTCAGAACCATATCGGACGGGGACGGCGTTTCGATCTTCGGCGGCAGCCATGTTTGGGTTGATCATTGCTCTTTATCAAACTGTAACGATGGATTGATCGACGCCATTCATGGGTCTACTGCGATTACGATTTCGAACAATTACATGACGCATCATGATAAAGTGATGTTGTTGGGGCACAGTGATTCGTACACTCAGGACAAGAATATGCAAGTTACCATTGCTTTCAACCATTTTGGTGAAGGTCTTGTTCAAAGAATGCCCAGATGCAGACATGGGTATTTTCATGTGGTGAACAACGACTATACGCATTGGGAAATGTACGCCATTGGAGGAAGTGCTGCTCCAACTATCAACAGTCAAGGGAACAGATTTGTTGCACCGGATGACAGATTCAGCAAAGAGGTGACAAAATATGAGGATGCACCGGAGAGTGAGTGGAAGAATTGGCATTGGAGATCAGAAGGAGATCTGATGCTAAACGGTGCATTTTTCACTGCCTCCGGCGCCGGAGCGTCGTCAAGTTACGCTAGAGCATCGAGTTTAGGGGCGAGACCGTCGTCGCTCGTCGGTACAATTACGACAAATGCGGGTGCACTGAACTGCAGGAAGGGCTCCCGCTGCTGA 1236 50.16 MAPPTVPLSLLSLFLFSVSLSAALSAAPAAVPNPELVVQEVHRSIINATKRRNLGYLSCGTGNPIDDCWRCDPNWEKNRQRLADCGIGFGKNAIGGRDGQIYVVTDSGDDDPVNPKPGTLRYAVIQDEPLWIIFARDMVIRLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGLNIHDCKPGGNTDVRDSPRHFGFRTISDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSAAPTINSQGNRFVAPDDRFSKEVTKYEDAPESEWKNWHWRSEGDLMLNGAFFTASGAGASSSYARASSLGARPSSLVGTITTNAGALNCRKGSRC 411
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4044022 4046023 - CmPI595203_03g009400.1 Cmu03g0940 411726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu03g0940 411 Gene3D - 62 404 IPR012334 -
Cmu03g0940 411 Pfam Pectate lyase 147 328 IPR002022 -
Cmu03g0940 411 PANTHER PECTATE LYASE 18-RELATED 21 408 IPR045032 GO:0030570(InterPro)
Cmu03g0940 411 SUPERFAMILY Pectin lyase-like 38 406 IPR011050 -
Cmu03g0940 411 PRINTS Pollen allergen Amb family signature 85 102 IPR018082 -
Cmu03g0940 411 PRINTS Pollen allergen Amb family signature 382 405 IPR018082 -
Cmu03g0940 411 PRINTS Pollen allergen Amb family signature 289 308 IPR018082 -
Cmu03g0940 411 PRINTS Pollen allergen Amb family signature 353 377 IPR018082 -
Cmu03g0940 411 PRINTS Pollen allergen Amb family signature 209 230 IPR018082 -
Cmu03g0940 411 PRINTS Pollen allergen Amb family signature 311 330 IPR018082 -
Cmu03g0940 411 PRINTS Pollen allergen Amb family signature 109 134 IPR018082 -
Cmu03g0940 411 PRINTS Pollen allergen Amb family signature 145 161 IPR018082 -
Cmu03g0940 411 SMART amb_all 137 334 IPR002022 -
Cmu03g0940 411 FunFam Pectate lyase 62 404 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g2120 Cmu-Chr1:33972121 Cmu03g0940 Cmu-Chr3:4044022 9.00E-123 dispersed
Cmu03g0940 Cmu-Chr3:4044022 Cmu08g1687 Cmu-Chr8:28428660 7.90E-189 dispersed
Cmu03g0940 Cmu-Chr3:4044022 Cmu05g0385 Cmu-Chr5:3284639 4.00E-177 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu03g0940 K01728 - csv:101209736 778.859