Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu03g0945 ATGATTGGAGAAACAGGGGAAATTGTATTCGACAAGATTTCTAGAAAGAAGAGGCAAAAGTTACCTTCAACTTTGCTTCTATCAATGGCAGCAACAGCCATGGCTGCGGAGCCGACGCAAGAGGTACTTTCTTGGCTCAAAACCCTACCGTTGGCTCCTGAATATCATCCGACTTTGGCAGAGTTTCAAGATCCAATTTCATACATTTTCAAGATCGAAAAAGAGGCTTCCAAGTTTGGAATCTGCAAAATTGTGCCCCCTGTACCTCCTTCACCGAAGAAAACTGTAATTGTCAATTTTAATAAGTCGCTTGCAGCTCGTGCCCCCTGTTCTGGCTCGACTAATTCCAAGTCTCCGCCTACATTCACAACTCGACAACAGCAGATCGGGTTTTGCCCGCGGAAAACACGACCTGTTCAGAAATCAGTGTGGCAGAGCGGTGAGTACTATACATTTCAGCAATTTGAGGCTAAGGCGAAGAACTTTGAGAAAAGCTATTTGAAGAAATGTGCCAAGAAAGGAGGGCTTTCGTCTTTGGAAATCGAGACGCTCTATTGGAGGGCCACTTTGGACAAGCCCTTTTCGGTGGAATATGCAAACGATATGCCTGGTTCAGCTTTTGTGCCGGTAAGTGCAAAAATTTTTAGGGAGGCAGGGGAAGGAACAACGCTTGGGGAAACGGCGTGGAACATGAGGGGTGTGTCTAGGGCGAAAGGGTCTCTGTTGAGGTTTATGAAGGAAGAGATTCCAGGAGTTACTTCGCCAATGGTTTATGTTGCTATGATGTTCAGTTGGTTTGCTTGGCATGTAGAAGACCATGACTTGCATAGTTTGAATTATCTGCATATGGGGGCGGGAAAGACTTGGTATGGTGTACCTAGAGATGCTGCTGTGGCGTTTGAGGAGGTTGTAAGGGTTCAGGGATACGGAGGAGAAATTAATCCCCTTGTAACTTTTGCTGTTCTTGGTGAGAAGACCACTGTGATGTCACCTGAAGTTCTAGTTAGCGCTGGAGTTCCATGTTGCAGGTTAGTGCAAAATGCAGGTGAATTTGTTGTCACTTTTCCTCGAGCTTATCATACAGGTTTCAGCCATGGATTTAACTGTGGGGAGGCAGCCAATATTGCAACTCCAGAATGGTTAAGGGTTGCTAAAGATGCTGCAATTCGTAGAGCTTCCATCAATTATCCTCCAATGGTCTCTCATTATCAGTTGCTATATGATCTTGCTTTAAGTTCCAGAGCACCTATGTGCACTGGTGCTGAACCAAGAAGTTCACGACTGAAAGATAAAAGGAGGAGTGAAGGGGAAACGGTTATAAAAGAGTTATTTGTACAGAATATTGTAGAGAATAACACCCTGCTGGACATTCTTGGAAGAGGAGCTTCAGTTGTACTTCTTCCCCCAGGTTCTTTAGAATCGATTTATTCCAGACTGCGTGTTGGATCCCACTTGAGAGCAAAATCTAGATTTCCTGCTGGTGTTTGCAGTTCTAAGGAAGAAACCAAATCTCCTCAAAGTTTTGATTATGATAATCTCGCACTAGAAAATAGTCCGGGAATTAATCGAGTGAAGGGTTTCTATTCAGCTAACGGGCTATATTCTACTCTATCTGAAAGTAGCATGGACAATTTATGTGCTTCAAGTTCAAGGTCTTTGAATGCCAACCACGAACGGGGTGGTAATGTTCAAAGCGATGGATTATCAGATCAAAGACTCTTTTCTTGTGTCACATGTGGTATTTTAAGCTTTGCCTGTGTAGCCATCATCCAACCCAGAGAACAAGCTGCTAGGTACCTTATGTCAGCTGACTGTAGCTTCTTTAATGATTGGGTCGTTGGTTCTGGGATAGCCAGTGAAGGGATTGCTACTAGAGATGGGCATGCAGTTAGCTCTCGGCAGAATAGTAACAGGGGAAAAAGAGATAAATGTGTCTCTGATGGTTTGTACGACGTCCCAGTCCAGGCTGTCAATCGCCAGCTTACAGTAGCAGATGAAAGTTACGAAGCTAATTTGAATACTGAAAAACGGAATGAGACTTCTGCCCTTGGAATGCTTGCATTGACTTATGGACATTCTTCTGATTCTGAGGAGGACCATGCTGAAGCAGATGCTGCTTTAAATGCAGATGATGATGCTAAACTAATGATTTGTTCTTCCGAAGACCAATATCAGTTTGAGAATTCTGGCCTTTCTTCTGGTGAATATTGCAAGAATACTGCAATTTCGAATAACGATCCCTTGTCTTATGGTGTTAACGCTGCAGATCAAATGCAATTTCAAGTCAATGACTATGAAGAATTTGGGCGAGCTAGATCTGATTCCAAAGATTCGTTCAATTGTTCTTCTGAGTCTGAAATGGATGGCATAGGTTCAACAAAGAAAAATGGCTTGTCAACTAGATATCAAGATTCACATGTGAATGTTAGATCTTCCTTGGATGCTGATACTGATAAACCAGTGTTTGACAAGTCCACTGAACCAGTGGAGATTGAGGATATGCCATTTGCTCCAGATATCGATGAAGACTCCTCGAGATTGCATGTATTTTGTCTAGAGCATGCAAAAGAAGTGGAACAACAACTTCGACCAATTGGAGGAGTGAACATTCTTTTACTTTGTCATCCAGACTATCCGAAGATGGAGGCAGAAGCAAAACTGCTGGCACAAGAATTAAATATGAACCATCTGTGGACTGATACAATGTTCAGAGGTGCCACCCAAGATGAAGAAAAGAGGATTCAGTTAGCTTTAGATAGCGAGGAAGCAACTCCGGGTAATGGAGATTGGGCTGTAAAGTTGGGAATAAACCTATTTTATAGTGCCAACCTTAGTCACTCTCCTCTTTATAGTAAGCAGATGCCATACAACTCTGTTATTTATAATGCATTTGGCCGTAGTACTTCTGCTAACTCTTCTGGTAAGCCGAAAGTCTATCAAAGGAGAACTGGCAAGCTGAAAAGAGTAGTTGCAGGGAAATGGTGCGGGAAAGTCTGGATGTCAAATCAAGTTCATCCTTTACTGGCAAAGAGAGATCCTCAAGAAGAAGATGTAGACATCTTCTCTTCTTGGACAATGTCAGATGAGAAGATTGATAGGAAACCAGAAAATATCCAGAAAAACGAGACTGTTATGGTCAATAGAAAGTCTGCTGGCAAGAGAAAAATGACTTATGGGAGCGGAACAACTAAGAAAGCCAAACCTATAGAGTCAGAGGACATGGTTTCAGATGCTTCGGTTGAAGATTGTATCCATCAGCATCATAGTATTCTACGAAACAAGCGATCCAAAATTGTTGAGAGCAATGATGCTAGATCAGATGATTCTGTGGAGGATGATTCTTGTAGAAAACATGGAGTTCCCATTAGCAAGGGAGTGACATATTGTGGGATAGATGATACTGGTTCAGATGATTCTCTTGGAGATCGTCATAATCTGCGCAGAGGGTTCTCTGGATTCAAGCTGCCTAAGTGGGGTGAGATAGAACCTGCACTTTCTGATGATTCCTTAGAGCACTATTCTTCTCAGCATCGTGGGAAAAATATTAAAAGCAAGACAGAAGAATACATTGAGAGACAAGATGCACTTTCAGATGAGTGTCTGGAGAGTGGTTCTCTTAAGCAATATAGAAGGATTCCGAGAAGCAAGCAAACCAAAGTTCTTAAAAAGAATGCCATTTCACATGATATACGGGATGATAGTTTTCTTTGGCATCATCAAAGGCCTTCCAGAAGCAAGAAGGCCAAATCTATCGAGAGTGAAGATGCAGTTTCAGAGGACTCCCTAGAAAATAATTCTCATCAGCATAGAAGTATGCCTCAAAGAAAACCAGTCAAACGCACTGCAAGGGAAGATGCATTTTCAGATGGTCCAGATGAAGATGATAATTCTCTTCTGCAGCATCGGAATATTAGAAGAAATGTGCAATTCAAATACAGTGAGAGAGAAATTACATCAGATGACCAGCTTGATGATACTGCTAATCAAAGCAGGAGGAGGGTACTCCGAAGTAAGCCAGTCAAGACAGAGACAATTTCACAAATGAAACAAGAGATCCTGCGACCTGCAAGGCGGAGAGCCTCTCAGACTTTGAAAGAAGAATTTGCTCAATCTTTAAAACGTGGAGGCCGCCATACGTTAAAATTAGAGACCCCTCGGCCAAAAATACAGCCTGCCACAAATAGACGAGGTAAGCAAACTAAGAGGAATAGTAAATCGACTGATTTAGAGTCAGAGGAAGAGCAACCAGGTGGACCTAGCACACGTCTTAGAAAAAGAACCCCAAAGCCTACAAAACTTTCAGAAGCAAAGCCAAAAGATAAAAAACCAATTGGCAAGAAAAAGGTGAAGAATGGTTCATCCTTGAAGACTCCAGCAGGCCATAGAGATTCAAAAGCAAGGGACGAGGAATCAGAGTATCTTTGTGACATCGAGGGTTGCAATATGAGTTTTGGTTCAAAACAAGAACTTGCCATGCACAAACGAAATATTTGTCCTGTCAAGGGGTGTGGGAAGAAGTTTTTCTCACATAAGTACCTTGTGCAGCATCGTCGAGTCCACATGGACGATCGTCCCCTCAAATGTCCATGGAAGGGCTGCAAGATGACTTTCAAATGGGCATGGGCACGAACAGAACATATTCGTGTTCATACAGGTGCCCGACCTTATGTTTGTGCTGAACCAGGATGTGGTCAGACATTCAGATTTGTTTCGGATTTTAGTCGTCACAAGCGGAAGACTGGACATTCGACAAAGAAAGGGAATTTGAATGCAAGAATCTGTCCATTAGAGACAAATTTGGCCTCCGAATCTGGCCTTTTTCTCTACCTTTCCATGCCTTAA 4842 42.59 MIGETGEIVFDKISRKKRQKLPSTLLLSMAATAMAAEPTQEVLSWLKTLPLAPEYHPTLAEFQDPISYIFKIEKEASKFGICKIVPPVPPSPKKTVIVNFNKSLAARAPCSGSTNSKSPPTFTTRQQQIGFCPRKTRPVQKSVWQSGEYYTFQQFEAKAKNFEKSYLKKCAKKGGLSSLEIETLYWRATLDKPFSVEYANDMPGSAFVPVSAKIFREAGEGTTLGETAWNMRGVSRAKGSLLRFMKEEIPGVTSPMVYVAMMFSWFAWHVEDHDLHSLNYLHMGAGKTWYGVPRDAAVAFEEVVRVQGYGGEINPLVTFAVLGEKTTVMSPEVLVSAGVPCCRLVQNAGEFVVTFPRAYHTGFSHGFNCGEAANIATPEWLRVAKDAAIRRASINYPPMVSHYQLLYDLALSSRAPMCTGAEPRSSRLKDKRRSEGETVIKELFVQNIVENNTLLDILGRGASVVLLPPGSLESIYSRLRVGSHLRAKSRFPAGVCSSKEETKSPQSFDYDNLALENSPGINRVKGFYSANGLYSTLSESSMDNLCASSSRSLNANHERGGNVQSDGLSDQRLFSCVTCGILSFACVAIIQPREQAARYLMSADCSFFNDWVVGSGIASEGIATRDGHAVSSRQNSNRGKRDKCVSDGLYDVPVQAVNRQLTVADESYEANLNTEKRNETSALGMLALTYGHSSDSEEDHAEADAALNADDDAKLMICSSEDQYQFENSGLSSGEYCKNTAISNNDPLSYGVNAADQMQFQVNDYEEFGRARSDSKDSFNCSSESEMDGIGSTKKNGLSTRYQDSHVNVRSSLDADTDKPVFDKSTEPVEIEDMPFAPDIDEDSSRLHVFCLEHAKEVEQQLRPIGGVNILLLCHPDYPKMEAEAKLLAQELNMNHLWTDTMFRGATQDEEKRIQLALDSEEATPGNGDWAVKLGINLFYSANLSHSPLYSKQMPYNSVIYNAFGRSTSANSSGKPKVYQRRTGKLKRVVAGKWCGKVWMSNQVHPLLAKRDPQEEDVDIFSSWTMSDEKIDRKPENIQKNETVMVNRKSAGKRKMTYGSGTTKKAKPIESEDMVSDASVEDCIHQHHSILRNKRSKIVESNDARSDDSVEDDSCRKHGVPISKGVTYCGIDDTGSDDSLGDRHNLRRGFSGFKLPKWGEIEPALSDDSLEHYSSQHRGKNIKSKTEEYIERQDALSDECLESGSLKQYRRIPRSKQTKVLKKNAISHDIRDDSFLWHHQRPSRSKKAKSIESEDAVSEDSLENNSHQHRSMPQRKPVKRTAREDAFSDGPDEDDNSLLQHRNIRRNVQFKYSEREITSDDQLDDTANQSRRRVLRSKPVKTETISQMKQEILRPARRRASQTLKEEFAQSLKRGGRHTLKLETPRPKIQPATNRRGKQTKRNSKSTDLESEEEQPGGPSTRLRKRTPKPTKLSEAKPKDKKPIGKKKVKNGSSLKTPAGHRDSKARDEESEYLCDIEGCNMSFGSKQELAMHKRNICPVKGCGKKFFSHKYLVQHRRVHMDDRPLKCPWKGCKMTFKWAWARTEHIRVHTGARPYVCAEPGCGQTFRFVSDFSRHKRKTGHSTKKGNLNARICPLETNLASESGLFLYLSMP 1613
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4105702 4114493 + CmPI595203_03g009450.1 Cmu03g0945 411731

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu03g0945 1613 MobiDBLite consensus disorder prediction 1050 1072 - -
Cmu03g0945 1613 ProSiteProfiles Zinc finger C2H2 type domain profile. 1556 1587 IPR013087 -
Cmu03g0945 1613 ProSitePatterns Zinc finger C2H2 type domain signature. 1528 1550 IPR013087 -
Cmu03g0945 1613 FunFam Probable lysine-specific demethylase ELF6 45 396 - -
Cmu03g0945 1613 SMART JmjN_1 51 92 IPR003349 -
Cmu03g0945 1613 Pfam JmjC domain, hydroxylase 257 374 IPR003347 -
Cmu03g0945 1613 Gene3D Classic Zinc Finger 1547 1592 - -
Cmu03g0945 1613 MobiDBLite consensus disorder prediction 1237 1301 - -
Cmu03g0945 1613 MobiDBLite consensus disorder prediction 1401 1420 - -
Cmu03g0945 1613 MobiDBLite consensus disorder prediction 1094 1117 - -
Cmu03g0945 1613 MobiDBLite consensus disorder prediction 1428 1442 - -
Cmu03g0945 1613 ProSiteProfiles Zinc finger C2H2 type domain profile. 1526 1555 IPR013087 -
Cmu03g0945 1613 FunFam Probable lysine-specific demethylase ELF6 1523 1552 - -
Cmu03g0945 1613 MobiDBLite consensus disorder prediction 1352 1384 - -
Cmu03g0945 1613 MobiDBLite consensus disorder prediction 1318 1339 - -
Cmu03g0945 1613 MobiDBLite consensus disorder prediction 1237 1270 - -
Cmu03g0945 1613 ProSitePatterns Zinc finger C2H2 type domain signature. 1558 1582 IPR013087 -
Cmu03g0945 1613 FunFam Probable lysine-specific demethylase ELF6 1553 1582 - -
Cmu03g0945 1613 Gene3D Cupin 45 396 - -
Cmu03g0945 1613 MobiDBLite consensus disorder prediction 782 801 - -
Cmu03g0945 1613 SUPERFAMILY beta-beta-alpha zinc fingers 1512 1554 IPR036236 -
Cmu03g0945 1613 SUPERFAMILY beta-beta-alpha zinc fingers 1544 1578 IPR036236 -
Cmu03g0945 1613 ProSitePatterns Zinc finger C2H2 type domain signature. 1498 1520 IPR013087 -
Cmu03g0945 1613 PANTHER LYSINE-SPECIFIC DEMETHYLASE 38 1354 - GO:0000785(PANTHER)|GO:0005634(PANTHER)|GO:0006338(PANTHER)|GO:0010468(PANTHER)|GO:0032452(PANTHER)|GO:0034647(PANTHER)
Cmu03g0945 1613 MobiDBLite consensus disorder prediction 771 801 - -
Cmu03g0945 1613 SUPERFAMILY Clavaminate synthase-like 237 403 - -
Cmu03g0945 1613 ProSiteProfiles Zinc finger C2H2 type domain profile. 1496 1525 IPR013087 -
Cmu03g0945 1613 ProSiteProfiles JmjN domain profile. 52 93 IPR003349 -
Cmu03g0945 1613 SMART cupin_9 223 392 IPR003347 -
Cmu03g0945 1613 SMART c2h2final6 1496 1520 IPR013087 -
Cmu03g0945 1613 SMART c2h2final6 1473 1495 IPR013087 -
Cmu03g0945 1613 SMART c2h2final6 1556 1582 IPR013087 -
Cmu03g0945 1613 SMART c2h2final6 1526 1550 IPR013087 -
Cmu03g0945 1613 Gene3D Classic Zinc Finger 1494 1546 - -
Cmu03g0945 1613 ProSiteProfiles JmjC domain profile. 226 392 IPR003347 -
Cmu03g0945 1613 MobiDBLite consensus disorder prediction 1318 1468 - -
Cmu03g0945 1613 Pfam jmjN domain 53 86 IPR003349 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu03g0945 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu03g0945 Cmu-Chr3:4105702 Cmu08g0706 Cmu-Chr8:19382456 2.30E-10 dispersed
Cmu03g0945 Cmu-Chr3:4105702 Cmu10g0983 Cmu-Chr10:1802042 1.50E-73 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g892 . . . . . . . . . Cmo18g00183 . . . . . Cpe20g00334 . . . . . . . . . . . . . . . Cone2ag0949 Cone16ag0052 . . Lsi02g00464 Csa01g00920 Chy12g01206 Cme12g01627 . . . . Bpe07g00876 . . . Sed08g2466 . . . Cma18g00207 Car13g00624 Car18g00201 Cpe09g00989 . Bhi08g01693 Tan05g2897 Cmetu10g1062 Lac10g0536 Hepe07g2164 . . Cla03g00321 Cam03g0337 Cec03g0329 Cco03g0343 Clacu03g0339 Cmu03g0945 Cre03g0638 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008005 0 1 1 1 1 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5879 PF02373 JmjC 1.20E-36 CL0029 Cmu TF