Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu03g0962 ATGGCAGATCGGAATCACTTTAACGCCGCCCATTTAGTTGATCTTCGAAGCGGTTTCTGTCCTCAGACGCAGATTTTCCACAGCCTCCGACCACCGCTCTCACTTCCACCATTATCTCAGCCTCTCTCCGTCACCGAACACGCTCTTTCTCTCCTTCAATCATCCCCTCCCCCTGCAAACGCCACCGTTCTCATCGACTCCAATTCCGGCTTCCATCTCTCCTACGCCATTTTCATCCGTCAAATTCGAACCCTCGCCTCAAATCTCAAAGCTTTAACCTCCCTCTCCAATGGACAAGTGGCATTTATTCTCGCTCCTACTTCTCTGCAAGTCCCTGTGTTGTATTTCGCTCTGTTATCTCTCGGTGTCATTCTCTCTCCGGCAAATCCAACCGGTTCCGAATCAGAGATTTCTCATCAGATTCGACTCAGTAAACCGGTCATTGCCTTCGCTACATCCTCAACGGCGTCCAAGCTCCCTAGGTTTCGATTCGGAACCGTCCTGATCGATTCACCTCATTTCCTCTCCATGATGACTGAAATCAACAGATCCGATCGTCTCACCGACATCAAAATCGACCAGTCCGACTCGGCGGCGATTCTGTACTCGTCAGGTACCACAGGGCGAGTGAAAGGCGTGTTACTGAGTCATCGGAATCTTATTGCGGTGAACTCAGGGCGTACTGCTCTTCAATCGGAGATCAAAGAAGGAGAAATGGAGCCACATCCGGTTTCTCTGTGTCTGTTGCCTTTGTTCCATGTTTTCGGATTCGTGATATTGCTTCGAGCGATTTCGCGAGGAGAAACGTTGGTTCTGATACAGAGATTCGATTTCGAAGCGATGCTAAGAGCAGTGGAGAAGTTTAGGGTTATTTCTCTTAAAGTTTTGGGGTGCGGCGGCGCTCCCCTTGGGAAAGAAGTGATCGATAAATTCCATCAGAAATTGCCCAACGTTGAAATTGTCCAGGGATATGGCTTGACAGAGAGTACAGCGGGGGCAGCAAGAACTCTGGGGCCTGAGGAAACCAACAACACCAATTCAGTAGGTCGCTTATCTGAAAATATGGAAGCCAAGATAGTGGATCCTGCATCTGGAGAGGCCTTACCTCCTGGCCACAAAGGAGAGCTTTGGCTGCGAGGTCCTGTAATCATGAAAGGTTATGTTGGAGATGACAAGGCAACTAATGAAACCTTACATCCAAATGGATGGCTAAAGACTGGTGATCTTTGCTATTTTGATTCTGATGGATTCCTGTACATTGTTGATAGATTAAAAGAATTGATCAAGTACAAGGCTTATCAGGTCCCACCTGCAGAATTGGAACATTTGCTTCAATCCAACCCTGAAATAATTGACGCTGCCGTGATACCCTATCCTGATGAAGAAGCTGGAGAGATTCCTATGGCTTATGTTGTTAGAAAGCCTGGAAGCAATATCACCGAGGCCCAAGTTATTGATTTCATTGCAAAACAGGTTGCGCCATACAAGAAAATTCGACGAGTTTCTTTTATCGACGCAATCCCGAAATCGCCCGCAGGGAAGATTCTAAGGAGGGAGCTTGCGAAACATGCTCTCTCACATGGTTCTAATAAGTTGTAA 1599 47.34 MADRNHFNAAHLVDLRSGFCPQTQIFHSLRPPLSLPPLSQPLSVTEHALSLLQSSPPPANATVLIDSNSGFHLSYAIFIRQIRTLASNLKALTSLSNGQVAFILAPTSLQVPVLYFALLSLGVILSPANPTGSESEISHQIRLSKPVIAFATSSTASKLPRFRFGTVLIDSPHFLSMMTEINRSDRLTDIKIDQSDSAAILYSSGTTGRVKGVLLSHRNLIAVNSGRTALQSEIKEGEMEPHPVSLCLLPLFHVFGFVILLRAISRGETLVLIQRFDFEAMLRAVEKFRVISLKVLGCGGAPLGKEVIDKFHQKLPNVEIVQGYGLTESTAGAARTLGPEETNNTNSVGRLSENMEAKIVDPASGEALPPGHKGELWLRGPVIMKGYVGDDKATNETLHPNGWLKTGDLCYFDSDGFLYIVDRLKELIKYKAYQVPPAELEHLLQSNPEIIDAAVIPYPDEEAGEIPMAYVVRKPGSNITEAQVIDFIAKQVAPYKKIRRVSFIDAIPKSPAGKILRRELAKHALSHGSNKL 532
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4245821 4250669 - CmPI595203_03g009620.1 Cmu03g0962 411748
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu03g0962 532 Gene3D - 294 425 IPR042099 -
Cmu03g0962 532 Pfam AMP-binding enzyme C-terminal domain 439 514 IPR025110 -
Cmu03g0962 532 Gene3D - 75 216 - -
Cmu03g0962 532 SUPERFAMILY Acetyl-CoA synthetase-like 60 526 - -
Cmu03g0962 532 ProSitePatterns Putative AMP-binding domain signature. 200 211 IPR020845 -
Cmu03g0962 532 Pfam AMP-binding enzyme 292 387 IPR000873 -
Cmu03g0962 532 Pfam AMP-binding enzyme 58 290 IPR000873 -
Cmu03g0962 532 Gene3D - 426 526 IPR045851 -
Cmu03g0962 532 FunFam 4-coumarate--CoA ligase 2 426 527 - -
Cmu03g0962 532 CDD 4CL 47 520 - -
Cmu03g0962 532 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 292 520 - GO:0016405(PANTHER)
Cmu03g0962 532 Gene3D - 72 291 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu03g0962 Cmu-Chr3:4245821 Cmu05g1567 Cmu-Chr5:25049289 1.00E-124 dispersed
Cmu03g0962 Cmu-Chr3:4245821 Cmu03g0963 Cmu-Chr3:4255927 4.40E-232 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu03g0962 K01904 - csv:101213796 875.544