Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu03g0963 ATGGCTGCCCATTCCGTTGATTCCCGCAGCGGTTTCTGTCCTCAAACCAAGATTTACAAGAGCCTCCGACCACCCTTCTCGCTTCCGCCGTTATCTCAGCCACTCACCGTTGCCGGACATGCTCTTTCGGTTCTCCGATCATCTCTTCCTCCGCCGAACACTGCTGCTCTCGTCGACTCCGACTCCGGCGTCACTGTCTCTTACGCCCTTTTCCTCCGTCAAATCCGAAACCTCACCTCTAACCTTAGAGCTCGTTACTCCTTCTCCAATGGTCAAGTGGCTTTTATTCTTTCACCGACTTCTCTGCAAATTCCTGTGTTGTATTTCGCTCTCTTATCTCTCGGCGTTATTGTCTCTCCGGCTAATCCAATCAGTTCCGAATCGGAGATTGCTCACCAGGTTAGTCTCTGTAAACCGGTCATTGCCTTCGCTACTTCCTCAACGGCGTCCAAGCTCCCGAGGCTTCCACTTGGTACTGTACTGATAGATTCGCCGGAGTTTCTATCTATGATAACTGAAATTAGTCGATTGGAAGGAGTAAACGATGGCATTGTGGACGGAGAAATCAATCAAAACAACTCCGCGGCGATTCTTTACTCTTCAGGGACTACCGGACGAGTGAAAGGCGTCTTACTCTCTCACCGGAACCTCATATCGGCGATCTCTGGGGTTCAAGTATTGGAGAAAACGCCCGTCGAAGGAGAGATTGAGCCACATCCCGTTGCTCTGTGTCTATTACCTCTGTTCCATGTTTTCGGGTTCTTTATGTTGTTTCGATCGATTTCAGAGGGCAATACATTGGTTCTGATGCGTAAATTCGATTTCCAGAGGATGTTAGGAGCAGTGGAGAAGTATAGGGTTACATACATTCCGGTTTCTCCGCCGCTGGTGGTGGCGATGGCCAAATCGGAGTTGGTGGCTAAGTATGATCTCAGCTCTCTTCAAATTTTGGGATGCGGCGGCGCTCCTCTTGGTAAAGAAGTCATTGATAAATTCCATCTCAGGTTTCCCAACGTAGAAATTATACAGGGATATGGCTTGACAGAGAGTTCAGGAGCGGCATCAAGAACTGTGGGGCCTGAAGAATGCAGTAATGCAGGTTCAGTAGGTCGCCTATCTGAAAATATGGAAGCCAAAATAGTTGATCCTTCGTCTGGAGAAGCCTTACCTCCTGGTCACAAAGGAGAACTTTGGCTGCGAGGTCCAGGAATCATGAAAGGTTATGTTGGAGATGAAAGGGCAACCGCTGAAACCTTGCATCCTGAGGGATGGCTAAAGACTGGTGACCTTTGTTACTTTGATTCCGATGGATTTCTCTACATCGTTGATCGATTAAAAGAATTGATCAAGTACAAGGCTTATCAGGTCCCACCTGCTGAATTGGAACATTTGCTTCAATCCCATCCCGAGATCCTTGACGCTGCTGTGATATCCTATCCTGATGAAGAAGCCGGAGAGATTCCATTAGCTTATGTGGTTAGAAAGCCCGAAAGTAATATCAGTGCGACTCAAGTCATGGATTTCATTGCAAAACAGGTTGCACCATACAAGAAAATCCGACGAGTTTCTTTTGTCAACACAATCCCAAAATCGCCTGCAGGGAAGATTCTTAGGAGGGAGCTTGTCCAACATGCTCTCTCTCATGGTTCTAGCAAGCTATAA 1662 47.53 MAAHSVDSRSGFCPQTKIYKSLRPPFSLPPLSQPLTVAGHALSVLRSSLPPPNTAALVDSDSGVTVSYALFLRQIRNLTSNLRARYSFSNGQVAFILSPTSLQIPVLYFALLSLGVIVSPANPISSESEIAHQVSLCKPVIAFATSSTASKLPRLPLGTVLIDSPEFLSMITEISRLEGVNDGIVDGEINQNNSAAILYSSGTTGRVKGVLLSHRNLISAISGVQVLEKTPVEGEIEPHPVALCLLPLFHVFGFFMLFRSISEGNTLVLMRKFDFQRMLGAVEKYRVTYIPVSPPLVVAMAKSELVAKYDLSSLQILGCGGAPLGKEVIDKFHLRFPNVEIIQGYGLTESSGAASRTVGPEECSNAGSVGRLSENMEAKIVDPSSGEALPPGHKGELWLRGPGIMKGYVGDERATAETLHPEGWLKTGDLCYFDSDGFLYIVDRLKELIKYKAYQVPPAELEHLLQSHPEILDAAVISYPDEEAGEIPLAYVVRKPESNISATQVMDFIAKQVAPYKKIRRVSFVNTIPKSPAGKILRRELVQHALSHGSSKL 553
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4255927 4259120 - CmPI595203_03g009630.1 Cmu03g0963 411749
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu03g0963 553 Gene3D - 447 547 IPR045851 -
Cmu03g0963 553 Pfam AMP-binding enzyme C-terminal domain 460 535 IPR025110 -
Cmu03g0963 553 CDD 4CL 29 541 - -
Cmu03g0963 553 Gene3D - 34 446 IPR042099 -
Cmu03g0963 553 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 12 541 - GO:0016405(PANTHER)
Cmu03g0963 553 Pfam AMP-binding enzyme 52 408 IPR000873 -
Cmu03g0963 553 SUPERFAMILY Acetyl-CoA synthetase-like 51 547 - -
Cmu03g0963 553 FunFam 4-coumarate--CoA ligase 2 447 548 - -
Cmu03g0963 553 ProSitePatterns Putative AMP-binding domain signature. 197 208 IPR020845 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu03g0963 Cmu-Chr3:4255927 Cmu05g1567 Cmu-Chr5:25049289 3.90E-135 dispersed
Cmu03g0962 Cmu-Chr3:4245821 Cmu03g0963 Cmu-Chr3:4255927 4.40E-232 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu03g0963 K01904 - csv:101211791 971.844