Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu03g0973 ATGGTTTCAACGAGAAGAAGTGGATCTCTCTCTGGTAGCAATAGCAAAAGATCTTCGTCCTCTGAGGATAAGCCATCGTCACCCAAGCGTCAAAAGGTGGAAAATGGGTGTGGCTCAGAGAAATCGATGCCGGCGGCGGAGAATTCTAAGGAATTATGCACCGCGCCGACTGTGGATCCCGGAGAGCATGGACCTGGCGGTGGTCCGATCGCTGGAGTTGACGTGGGAGAAGGTGTGAGCTCTTTGAAGGAGGATGCTGCACCAGCGGCCGTCGCTCTTACCACTCCTATCGCCGAGGGAACTTCGCTGGTAGGGGATAAGCCTAGGAGTTCATTTTCATCATGGAGTCACTATGCTGCGAAGCAGAATCCAAATTTTGAAACGACAACTCCTTGGTGTAGGCTTCTCTCACAGTTCGGTCAGAACTCCAATGTTGATATTTTCTCGTCAAATTTTACCATTGGTTCTAGTAGAGGTTGCAACTTTCCCTTGAAGGATCACACAATTAGTGGGACACTTTGCAAGATCAAGCACACTCAGCGTGATGGTAGTGCTGTGGCTGTGCTTGAAAGTACGGGAGGCAAGGGATCGGTGATGGTTAATGGGTTGACTGTCAAGAAGAGCACCAACTGTGTGCTAAATTCGGGTGACGAGGTGGTCTTTGGTGCTTTGGGGAATCATGCTTATATATTTCAACAACTTATGAATGAGGTTTCAGTTAAAGGTCTAGATGTTCAGAGTGGTGTTGGAAAATTCTTGCAGCTCGGAAAGAGGACTGGCGATCCGTCTGCTGTGGCCGGGGCCTCGATCTTGGCATCTCTTTCAAGTCTCAGGCAGGATATTTCACGTTGGAAGCCTCCTTCTCAGACCAGCAGTAAAACACACCAAGGTGCTGAACTTCCTTCTAAATCTGTTGTTCATGATGCAATGGAACTTGAAATTGATGCTCTTGAAGGCAACTCAAATCCAGAAGTACGAAATGATAAAGCTGTAGACTCAAGCACAACTAACAGGAATCTTCATCCCGGCTCCAATCCAGATGCTGTCATAGAGGCAGGCAATGTAATGGAAGAAAGAAACCAGTGGATTGGAGAGTTGCAGCCAGCATCAACTTCGGGAATGTCTTTGCGGTGTGCAGCCTTTAAAGAAGATGTTCTTGCAGGGATTGTTGATGGAAGGGACTTAGAAGTTTCATTTGACAACTTTCCATACTATTTGAGTGAGAATACGAAGAATGTGCTTATTGCTGCTTCTTTCATACACTTGAAGCATAAAGAACATTCAAAGTATACCTCAGAATTAAATACGGTGAATCCACGAATTCTACTTTCTGGTCCCGCTGGTTCAGAGATATATCAAGAGATGCTAGCAAAGGCACTTGCCAACTACTATGGTGCTAAGCTACTCATATTTGATAGCCATTCATTTTTGGGCGGTTTATCATCAAAGGAAGCAGAGCTGTTGAAGGATGGAATAAATGCAGCAAAGTCTTGTAGCTGTTCTAAACAGAGTATGGCATCTACTGAGACCACCAAGAACACAGATCAAGTGACTGGTGAAGAAGATACTCCAAGCTCTTCAAATGCTACTTTATTCACCCCTGATTCCCAACCTAAGATGGAGATGGACTCAATACCATCATCCTCTGGGACAGCAAAGAATAACTTTTTAAAAATTGGTGATAGAGTAAGATTTATAGGTTCAGCTTCTGGGGGGATATATCCTACAACATCTCCCTCAAGGGGCCCACCCAATGGAACTCGTGGAAAGGTTGTATTAACTTTTGACAACAACTCTTCGTCAAAAATTGGTGTTAAGTTTGATAAACTTATACCTGATGGAGTTGATCTTGGGGGATATTGTGAAGGAGGCTATGGATATTTCTGTAATGCAACCGATCTTCGTTTGGAGAACTCTGGCGTGGAAGAATTGGATAAGATACTTATTGATATTTTATTTGAGGCGGTATTTAGTGAAAGCCGAAATTCTCCTTTCATTTTGTTCATGAAAGATGCTGAGAAGTCACTTGTCGGAAATTTAGACTCCTATTCTACTTTTAAAATTAGACTGGAAAAGCTTCCTGACAATGTTATAGTAATTGGCTCTCATACTCATACTGACAACCGCAAAGAGAAGTCGCATCCTGGTGGCCTGCTTTTCACGAAATTTGGCAGCAATCAAACTGCTCTTCTTGACTTGGCATTTCCGGATAGTTTTGGAAGACTACATGACAGAGGAAAGGAAGTTCCAAAAGCAACAAAACTTCTTACTAAACTGTTTCCCAATAAAGTTACAATCCATATGCCGCAGGATGAGGGCCTTCTTGTGTCATGGAAACACCAGTTAGAACGAGATGCTGAAACTCTCAAAATGAAGGGAAATCTGAATCAATTGCGCGTTGTTTTGAGTAGGAGTGGGATGGATTGTGAAGGTTTAGAGACATTATGCATCAAGGATCAAACACTTACGAACGAGAGTGCGGAGAAGGTAGTTGGATGGGCCTTAAGCCATCATTTAATGCAGAATCTAGAAGCCGATCCTGATTCTAGAGTTCTTTTGTCTAGTGAGAGCATTCAATACGGGATAAGCATCTTACAGGCTATCCAGAATGAATCTAAGTGCTTGAAGAAGTCACTTAAGGATGTTGTCACGGAGAATGAATTTGAGAAAAGGCTTTTAGCAGACGTTATCCCACCCAGTGATATAGGAGTCACATTTGATGATATTGGAGCTCTTGAAAATGTGAAGGATACTCTAAAGGAGTTGGTGATGCTTCCTTTACAAAGGCCTGAACTTTTCTGCAAGGGGCAATTGACCAAGCCATGCAAAGGTATTCTGTTATTTGGCCCACCTGGAACAGGTAAGACGATGCTTGCAAAAGCTGTTGCTACTGAAGCTGGTGCAAATTTTATCAACATTTCCATGTCAAGCATTACGTCAAAGTGGTTCGGTGAGGGTGAGAAGTATGTAAAAGCTGTTTTCTCTCTAGCCAGTAAAATTGCCCCAAGTGTTGTATTTGTTGATGAAGTTGACAGCATGTTGGGTCGAAGAGAAAATCCAGGAGAACATGAGGCCATGCGGAAGATGAAAAATGAATTTATGGTGAACTGGGATGGTTTGCGAACAAAGGACACAGAAAGGGTGCTGGTTCTTGCAGCCACAAACAGACCTTTTGACCTTGATGAAGCTGTTATTCGAAGGCTTCCTCGTAGGTTGATGGTGAATTTGCCAGATGCTCCAAACAGAGCAAAAATACTTAAAGTTATTTTGGCAAAAGAAGATTTGTCTCCAGAATTTGATTTTGATTCGGTTGCTAGTATGACAGATGGATACTCTGGGAGTGACCTTAAGAATCTTTGTGTTGCTGCTGCTCACCGTCCAATTAAAGAGATATTGGAGAAGGAAAAAAAGGAGCGAGCTGCAGCTCTTGCAGATGGCAGGCCTGCTCCAGCCCTTAGTGGAAGTGAGGATATTCGGCCTCTAAATATGGATGACTTTAAATATGCTCATGAACGGGTATGTGCGAGTGTTTCGTCGGAGTCTGTAAACATGACAGAGCTGTTACAGTGGAACGAGCTCTACGGTGAAGGGGGTTCTAGGAGAAAGAAGGCTCTTAGTTACTTCATCGTTGCTGCCGGCGGTAAGCCTCCGATCACCCAATTTGGAATTCGCTATTATAATTATCATATGAAAACAACGGATGTTAACTTGTTTAACTTTTTGAATAGAAGGAAATCACATCAGTTCGCAATGGCGGTCTCATTGAGCGATGTTAAGTCGGCAGCCGGTCTAAAAAAGCTCGACGAGTACCTGCTCAGTCGTAGTTACATTTCTGGGTATCAAGCTTCAAAAGATGATATCGCTGTTTACGAAGCTATCTCCAAACCCGTTTCCAGCGAATATGTTAACGTATCTAGGTGGTTCAATCACATCGAAGCACTCATGAGAGCCTCTGCTGGGTTTGGAGAGGGTTCTGGCGTTAAGTTCGATGCAGAAGCAATCGCAACCCCACCAGCTGCCGATGCTAAGGCTAGTGCTGATGACGACGATGATGACGATATGGATCTGTTTGGTGAAGAGACTGAAGAGGAAAAGAAGGCTGCCGAAGAGCGCGCAGCTGCCATCAAGGCTTCTGCAAAGAAGAAAGAGAGTGGAAAATCATCAGTTTTGATGGATATCAAGCCTTGGGATGATGAAACTGACATGAAGAAACTTGAAGAGGCCGTAAGAAGTGTTCAGATGGAAGGATTGCTTTGGGGAGCATCCAAACTCGTCCCTGTTGGATATGGTATTAAGAAACTGCAGATAATGCTCACAATTGTTGACGACCTTGTAGTTGTGATATTGTTGCCTTCAACAAAATCTAAGATTGAGCTTTTTGCCAAGTCCAAGAGCTGGTCATTCCAAAGATGA 4413 43.58 MVSTRRSGSLSGSNSKRSSSSEDKPSSPKRQKVENGCGSEKSMPAAENSKELCTAPTVDPGEHGPGGGPIAGVDVGEGVSSLKEDAAPAAVALTTPIAEGTSLVGDKPRSSFSSWSHYAAKQNPNFETTTPWCRLLSQFGQNSNVDIFSSNFTIGSSRGCNFPLKDHTISGTLCKIKHTQRDGSAVAVLESTGGKGSVMVNGLTVKKSTNCVLNSGDEVVFGALGNHAYIFQQLMNEVSVKGLDVQSGVGKFLQLGKRTGDPSAVAGASILASLSSLRQDISRWKPPSQTSSKTHQGAELPSKSVVHDAMELEIDALEGNSNPEVRNDKAVDSSTTNRNLHPGSNPDAVIEAGNVMEERNQWIGELQPASTSGMSLRCAAFKEDVLAGIVDGRDLEVSFDNFPYYLSENTKNVLIAASFIHLKHKEHSKYTSELNTVNPRILLSGPAGSEIYQEMLAKALANYYGAKLLIFDSHSFLGGLSSKEAELLKDGINAAKSCSCSKQSMASTETTKNTDQVTGEEDTPSSSNATLFTPDSQPKMEMDSIPSSSGTAKNNFLKIGDRVRFIGSASGGIYPTTSPSRGPPNGTRGKVVLTFDNNSSSKIGVKFDKLIPDGVDLGGYCEGGYGYFCNATDLRLENSGVEELDKILIDILFEAVFSESRNSPFILFMKDAEKSLVGNLDSYSTFKIRLEKLPDNVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEVPKATKLLTKLFPNKVTIHMPQDEGLLVSWKHQLERDAETLKMKGNLNQLRVVLSRSGMDCEGLETLCIKDQTLTNESAEKVVGWALSHHLMQNLEADPDSRVLLSSESIQYGISILQAIQNESKCLKKSLKDVVTENEFEKRLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERVLVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILKVILAKEDLSPEFDFDSVASMTDGYSGSDLKNLCVAAAHRPIKEILEKEKKERAAALADGRPAPALSGSEDIRPLNMDDFKYAHERVCASVSSESVNMTELLQWNELYGEGGSRRKKALSYFIVAAGGKPPITQFGIRYYNYHMKTTDVNLFNFLNRRKSHQFAMAVSLSDVKSAAGLKKLDEYLLSRSYISGYQASKDDIAVYEAISKPVSSEYVNVSRWFNHIEALMRASAGFGEGSGVKFDAEAIATPPAADAKASADDDDDDDMDLFGEETEEEKKAAEERAAAIKASAKKKESGKSSVLMDIKPWDDETDMKKLEEAVRSVQMEGLLWGASKLVPVGYGIKKLQIMLTIVDDLVVVILLPSTKSKIELFAKSKSWSFQR 1470
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4328823 4345891 - CmPI595203_03g009730.1 Cmu03g0973 411759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu03g0973 1470 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 144 1208 IPR051701 GO:0005741(PANTHER)
Cmu03g0973 1470 MobiDBLite consensus disorder prediction 326 343 - -
Cmu03g0973 1470 MobiDBLite consensus disorder prediction 1338 1379 - -
Cmu03g0973 1470 SMART EF1_GNE_2 1386 1463 IPR014038 GO:0003746(InterPro)|GO:0006414(InterPro)
Cmu03g0973 1470 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 904 1185 IPR027417 -
Cmu03g0973 1470 SUPERFAMILY eEF-1beta-like 1383 1447 IPR036219 -
Cmu03g0973 1470 Gene3D - 1379 1464 IPR014717 -
Cmu03g0973 1470 Gene3D - 131 240 - -
Cmu03g0973 1470 MobiDBLite consensus disorder prediction 22 36 - -
Cmu03g0973 1470 MobiDBLite consensus disorder prediction 316 347 - -
Cmu03g0973 1470 Pfam FHA domain 153 222 IPR000253 GO:0005515(InterPro)
Cmu03g0973 1470 ProSitePatterns Elongation factor 1 beta/beta'/delta chain signature 1. 1350 1358 IPR001326 GO:0003746(InterPro)|GO:0006414(InterPro)
Cmu03g0973 1470 Pfam EF-1 guanine nucleotide exchange domain 1388 1447 IPR014038 GO:0003746(InterPro)|GO:0006414(InterPro)
Cmu03g0973 1470 Gene3D - 1077 1171 - -
Cmu03g0973 1470 MobiDBLite consensus disorder prediction 282 301 - -
Cmu03g0973 1470 Coils Coil 1358 1378 - -
Cmu03g0973 1470 CDD EF1B 1384 1447 IPR014038 GO:0003746(InterPro)|GO:0006414(InterPro)
Cmu03g0973 1470 FunFam Elongation factor 1-beta 1 like 1380 1466 - -
Cmu03g0973 1470 CDD RecA-like_ATAD1 908 1074 - -
Cmu03g0973 1470 MobiDBLite consensus disorder prediction 1345 1359 - -
Cmu03g0973 1470 MobiDBLite consensus disorder prediction 1 21 - -
Cmu03g0973 1470 Gene3D - 903 1184 IPR027417 -
Cmu03g0973 1470 SUPERFAMILY SMAD/FHA domain 131 229 IPR008984 GO:0005515(InterPro)
Cmu03g0973 1470 FunFam Elongation factor 1-delta 1 1253 1328 - -
Cmu03g0973 1470 Gene3D - 1245 1321 - -
Cmu03g0973 1470 Pfam ATPase family associated with various cellular activities (AAA) 945 1075 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
Cmu03g0973 1470 MobiDBLite consensus disorder prediction 503 549 - -
Cmu03g0973 1470 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein 903 1079 - -
Cmu03g0973 1470 CDD FHA 134 232 - -
Cmu03g0973 1470 Pfam AAA+ lid domain 1099 1134 IPR041569 -
Cmu03g0973 1470 MobiDBLite consensus disorder prediction 1 76 - -
Cmu03g0973 1470 MobiDBLite consensus disorder prediction 282 299 - -
Cmu03g0973 1470 ProSitePatterns AAA-protein family signature. 1048 1067 IPR003960 GO:0005524(InterPro)|GO:0016887(InterPro)
Cmu03g0973 1470 SMART AAA_5 941 1078 IPR003593 GO:0016887(InterPro)
Cmu03g0973 1470 MobiDBLite consensus disorder prediction 1360 1379 - -
Cmu03g0973 1470 SUPERFAMILY GST C-terminal domain-like 1258 1315 IPR036282 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g0023 Cmu-Chr1:186001 Cmu03g0973 Cmu-Chr3:4328823 4.80E-79 dispersed
Cmu01g0084 Cmu-Chr1:685597 Cmu03g0973 Cmu-Chr3:4328823 3.00E-145 dispersed
Cmu03g0973 Cmu-Chr3:4328823 Cmu09g0568 Cmu-Chr9:5208437 0.00E+00 dispersed
Cmu03g0973 Cmu-Chr3:4328823 Cmu07g0780 Cmu-Chr7:19672498 1.10E-160 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu03g0973 - - - 0.0