Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu03g1000 ATGGCAGCTTTTTCTTATCAATACCAACCCTTTCTTCTTGACTCCATTTTCTTGCCCAACAATCCTCTCAAAATGGGAGGCTTTTTTGATGACCAAAATTTCAACACAAATTGTTTCTCTCAATTTTACCCTCAAGACCAACAACAACAACAACAACAACCCATTTACCATTTTCCTGACCTCTCTAAACAAAGCCCTGAATCTTCCACTTTGGTCGACCGATCCGACAGCGCCGAACCGCCGGTCGGAAATCAGTTGAAACCGGCTGTTACGGTTACCGTAACTTCCCCTTGTACTAAGAAAAGGAAGAGCCGGAATAATTCTTCCGCCACCTCCGCTCAATCCAAGGGTACTACTGAGAGCACTGCGAAAAAGCAGAAAAGTAAAGGGGAACACGAAGGGAAAGAAAAAGATCATCAAAAGGCTAAAAATGGGAAGAAATTAGAGGAGAAAAAAATTTTAGAAGAAGGTGGTGCAACCACTGGTTACATTCATGTTAGAGCTAGAAGGGGCCAAGCCACTGACAGCCACAGTCTTGCTGAGAGGGTGCGAAGGGAGAAGATTAGCGAAAGGATGAAGACATTGCAACGCCTTGTTCCCGGTTGCGACAAGGTTACAGGAAAGGCCCTTATGTTGGATGAAATTATCAATTATGTTCAGTCCCTACAAAATCAAGTTGAGTTTCTCTCCATGAAACTCGCTTCTTTGAACCCAATTCTCTTCGACTTCAGAATGGACTTGGACGGCCTAATGATCCAACCAGAGATGACGTCGTTGAGTAGCATAACACCACAACTTCCAGCGATGGCACAATGTAGCATCGTGGCACCACCGGCGTTGATCGACACGACCCCTTCGACGACTCCATCTCCGGCAATCTCCGCCGCAAATAATTTTCCCTTAATGGACTCTTCAGCTAATTTGTTTCTATTTCAACAAGGGATAAGCGCAAATAATGGCTACTCCCAATCGTCACAGGATAACGTTAAAGTTTCATCATGGGATGTCGAAGACCAGAAACGAAAGCTTCTTATTTCATCAGGAATTGGCGACAACGTATGTTACTTCCATTAA 1074 44.23 MAAFSYQYQPFLLDSIFLPNNPLKMGGFFDDQNFNTNCFSQFYPQDQQQQQQQPIYHFPDLSKQSPESSTLVDRSDSAEPPVGNQLKPAVTVTVTSPCTKKRKSRNNSSATSAQSKGTTESTAKKQKSKGEHEGKEKDHQKAKNGKKLEEKKILEEGGATTGYIHVRARRGQATDSHSLAERVRREKISERMKTLQRLVPGCDKVTGKALMLDEIINYVQSLQNQVEFLSMKLASLNPILFDFRMDLDGLMIQPEMTSLSSITPQLPAMAQCSIVAPPALIDTTPSTTPSPAISAANNFPLMDSSANLFLFQQGISANNGYSQSSQDNVKVSSWDVEDQKRKLLISSGIGDNVCYFH 357
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4618220 4620048 - CmPI595203_03g010000.1 Cmu03g1000 411786
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu03g1000 357 MobiDBLite consensus disorder prediction 59 75 - -
Cmu03g1000 357 FunFam Basic helix-loop-helix transcription factor 169 241 - -
Cmu03g1000 357 MobiDBLite consensus disorder prediction 59 154 - -
Cmu03g1000 357 CDD bHLH_AtBPE_like 162 247 - -
Cmu03g1000 357 Pfam Helix-loop-helix DNA-binding domain 176 223 IPR011598 GO:0046983(InterPro)
Cmu03g1000 357 MobiDBLite consensus disorder prediction 88 121 - -
Cmu03g1000 357 MobiDBLite consensus disorder prediction 122 154 - -
Cmu03g1000 357 Gene3D - 169 240 IPR036638 GO:0046983(InterPro)
Cmu03g1000 357 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 170 238 IPR036638 GO:0046983(InterPro)
Cmu03g1000 357 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 172 222 IPR011598 GO:0046983(InterPro)
Cmu03g1000 357 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 46 317 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Cmu03g1000 357 SMART finulus 178 228 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu03g1000 Cmu-Chr3:4618220 Cmu09g0819 Cmu-Chr9:7926626 1.60E-33 dispersed
Cmu03g1000 Cmu-Chr3:4618220 Cmu06g1866 Cmu-Chr6:29453668 7.90E-36 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5884 PF00010 HLH 7.00E-07 No_clan Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu03g1000 - - - 0.0