Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu03g1002 ATGCTTTCTAGAGTTGGGAACGTTCTTTGGATGGAAAATCGCGACGATGAAGACTCTGCTTCTTGGACTAAAAACAACAGCGACCACAACCATCTCAACCACCCTGCTAATTGCTCTGTTTTGGACAACAAGGACGAAATCACCTCTCTCTCTACCTTCAAATCCATGCTCGAGGTTGAAGACGACTGGTGCATCTCTGCTAATGCCCTCCATAACCATAATCACCACACCGACATCAATGACATTACCTTCTCTCAGAATTTCACCGACCCACCTGACAATTTGTTGCTCCCTCCTGGAGATTCCTCCTCTTCTTGTTCCCCTTCTTCCTCTGTCTTCAATAACATTGACCCATCTCAATTGCGCTTCTTTTTACCCCAAACTCGCACTTTGTCTTCACTTCATAAGGTAATTTCTAACAACCCTTTAGACCATGGATTCGATTTGGGAGCAGAGGTTGGGTTTCTTGACGTCCAAGCTTCAAATGCTTCGACTCTGCTCAACGATGGAGGTGGGTTATTAACTGGGTTCACTGATTTAAGCCCAACTAGCCAGATGAACACTCCTAATTTGTGCTTAGGCTCTCAATTGACAGCCCCTAATGTGTCCCCAATGACTGAAAATTGTTCGGGTTTAGCTGGATTCCAGAGTTTCGATGAGAATTTGGGAAATGCTCTGCTTCTGAATCGGTCTAAGCTTTTGAGACCACTAGAATCTTTTCCCACAGTGGGAGCTCAGCCAACTCTGTTTCAGAAGAGGGCAGCTCTAAGGAAGAGTTTAGCTGATAAGGGAAGCAATTTGGGGGTTTTGAGCCCCGATGGCGGCTGGTTTTCAAACAGGATTGAAGGGGGCATTGGAAAAAATGAAGTGGGTGATGAAAATGGGAAGAAGAGGAAAATGATTTATGCAGATGAATTGCAAGATACTAGCATCGACACATCTCGTTTTAATTACGATTCTGATGACTTTACTGAGAATACTAACACTAAATTGGATGAGAGTGGTAGAAATGTTGGAAATACATCTAACGCCAATAGTACAGTAACCGGCGGCGACCAGAAGGGGAAGAAGAAAGGACTTCCGGCGAAGAATTTGATGGCTGAGAGGCGCCGGAGGAAGAAGCTCAATGATAGGCTCTACATGCTGAGGTCCGTTGTTCCAAAAATCAGCAAAATGGATAGAGCTTCAATTCTTGGGGATGCAATTGAGTACTTGAAGGAACTACTGCAAAGAATCAATGACCTCCATAATGAATTGGAGTTTGCCCCATCTGGGGCAGCCTTGACGCCGGGTGCAAGCTTCCACCCGCTGACTCCAACTCCGCCAAGCCTCTCGAGTCGTATAAAGGAGGAGCTTTGTCCTAGCTCATTTCCCAGCCCAAATGGCCAACCTGCAAGGGTCGAAGTTAGGGTACGAGAAGGACGGGCAGTAAATATACACATGTTTTGTGGTCGTCGACCGGGTCTCTTGCTCTCCACAGTTAGGGCATTAGATAATCTTGGATTGGACATCCAACAAGCTGTGATTAGCTGCTTTAATGGTTTTGCCATGGACATTTTTCGAGCAGAGCAATGCAGCGAAGGTCAAGATGTCCATCCCGAGCAGATAAAAGCAATTTTATTGGATTCAGTTGGTTTTAATGAAGCTTATCCTTTAAATCAGAAGAACTCCATAGGCCCATGTGATGTGAAAACAGTATTACTAATTAGTATAACCAAGAAAAAGGAAAGAGATCATAAGCTATTGCCATTGCTTGTTGCAGCCAAATGCTCGTTTCTATGGGCTGAGACCAAAATGAAGCAGAAGCAAAGCGGTTCAGGCAATTATGTATTACTTCAAATTTTCGACCAGCATGCTGAACAAATAACTCAAGGTCCTTTGCCAACTGTTCTGCTACACAAGTTATCATTCCGTTATCTCATTGCAACACTTTGA 1935 44.39 MLSRVGNVLWMENRDDEDSASWTKNNSDHNHLNHPANCSVLDNKDEITSLSTFKSMLEVEDDWCISANALHNHNHHTDINDITFSQNFTDPPDNLLLPPGDSSSSCSPSSSVFNNIDPSQLRFFLPQTRTLSSLHKVISNNPLDHGFDLGAEVGFLDVQASNASTLLNDGGGLLTGFTDLSPTSQMNTPNLCLGSQLTAPNVSPMTENCSGLAGFQSFDENLGNALLLNRSKLLRPLESFPTVGAQPTLFQKRAALRKSLADKGSNLGVLSPDGGWFSNRIEGGIGKNEVGDENGKKRKMIYADELQDTSIDTSRFNYDSDDFTENTNTKLDESGRNVGNTSNANSTVTGGDQKGKKKGLPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKELLQRINDLHNELEFAPSGAALTPGASFHPLTPTPPSLSSRIKEELCPSSFPSPNGQPARVEVRVREGRAVNIHMFCGRRPGLLLSTVRALDNLGLDIQQAVISCFNGFAMDIFRAEQCSEGQDVHPEQIKAILLDSVGFNEAYPLNQKNSIGPCDVKTVLLISITKKKERDHKLLPLLVAAKCSFLWAETKMKQKQSGSGNYVLLQIFDQHAEQITQGPLPTVLLHKLSFRYLIATL 644
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4648530 4652616 + CmPI595203_03g010020.1 Cmu03g1002 411788
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu03g1002 644 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 316 545 IPR051358 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Cmu03g1002 644 FunFam BHLH transcription factor 355 423 - -
Cmu03g1002 644 SMART finulus 365 414 IPR011598 GO:0046983(InterPro)
Cmu03g1002 644 Gene3D - 353 422 IPR036638 GO:0046983(InterPro)
Cmu03g1002 644 MobiDBLite consensus disorder prediction 327 352 - -
Cmu03g1002 644 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 362 425 IPR036638 GO:0046983(InterPro)
Cmu03g1002 644 MobiDBLite consensus disorder prediction 327 359 - -
Cmu03g1002 644 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 359 408 IPR011598 GO:0046983(InterPro)
Cmu03g1002 644 CDD bHLH_AtAMS_like 362 426 - -
Cmu03g1002 644 Pfam Plant bHLH transcription factor, ACT-like domain 467 539 IPR054502 -
Cmu03g1002 644 Pfam Helix-loop-helix DNA-binding domain 366 408 IPR011598 GO:0046983(InterPro)
Cmu03g1002 644 Coils Coil 398 418 - -
Cmu03g1002 644 CDD ACT_UUR-ACR-like 479 539 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g1763 Cmu-Chr1:31347739 Cmu03g1002 Cmu-Chr3:4648530 1.70E-32 dispersed
Cmu03g1002 Cmu-Chr3:4648530 Cmu05g1341 Cmu-Chr5:16333750 3.80E-137 dispersed
Cmu03g1002 Cmu-Chr3:4648530 Cmu11g1484 Cmu-Chr11:27146309 6.60E-33 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5885 PF00010 HLH 2.50E-09 No_clan Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu03g1002 - - - 0.0