Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu03g1019 ATGCTTAGGGTTTGGGTAATGGCTCTGACAGAGGTGAAAACGCTGTATCTGCAATTTTTTCTGCTTTTCATCCTAATTTGGGTATCCAGAATGGGCGTCTCGGACACTATGTTCAACGACTCCTTAAGTGGGCATTCGGTTGTTTCCAGGAATGAAAATCCAAAAGGACGGTGTCCACATGGTTGGTTTATTAGCCCAAACAAGACCAAGTGCTATGGTTTCATGTCGAGTCCAAAATCATGGAATGATTCAGAGACCCAATGTAATGGTTTTGGTGGGAACTTAGCAGCTCTCATAACATGTCAAGAGTTTAGCTTTGCACAAGATCTATGTAATGGAACTCTTGGTGGCTGTTGGGTTGGTGGCAGAGCATTCAACTCTTCAAATGATTTTGTTTGGAAATGGTCAGATAATGTATCGAAATGGAATGATTCCATTATTCCCAGAACAACTTTGCAATCTAACTGCAAAAATGTCTCTTGCCGCATGAATGATTTGGTTGAAACATGTACTTTAATATTTGGGGGACCAGCAACACCGTTCCTTAGGGATGAGAAATGCAGCAGTTCTCACCCTTTTATATGCATGATAAATCTAGATGATAGATGCCATCGCATGCACTGCCACAAGGATTATCTAGTTATTCTAGCTGTTGTGAGTGGGTTGATATTTTGCACAACGTTAGCTGTGGTGATTTGGCTTCTTGCCCACAAGAGGAGCAAGAAACGGAGAAGGTCCCGGAAGCCATCCAACCCAGCAGCTTCTGCACTGGTACCCCCCTCGTGGAAGGTGTTTACCAAAGAAGAGCTAAGATCAATAACAAAAAACTTCAGTGAGGGAAACCGTCTTCTTGGAGACACAAAAACGGGTGGTACATACATTGGACTTTTGCCTGATGGTTCAAGAGTTGCAATTAAAAGGTTGAAGAAGTCCAGCTTTCAGAGGAAAAAAGAGTTTCATTCCGAAATTGCAAGAGTTGCTAGACTTCGTCACCCAAATTTGGTTGCCCTGAAAGGATGCTGCTATGACCATGGTGACCGCTACATTGTTTATGAATTCATTGTTAATGGGCCCTTAGATAGATGGCTTCACCATGTACCAAGAGGTGGTCGATACTTAGATTGGACCATGAGAATGAAAATTGCTACAACTCTTGCCCAAGGGATTGCGTTCCTTCATGACAAGGTCAAGCCACATGTGGTACATCGTGATATCCGTGCGAGTAATGTACTTCTTGATGAAGAATTTGGAGCACATCTGATGGGAGTTGGCCTATCGAAATTGGTAGCATATGAAGTGATGCATGAGAGGACAGTGATGGCAGGAGGAACCTATGGATACCTTGCTCCTGAATTTGTCTACAGAAACGAGCTAACCACAAAAAGTGATGTCTATAGTTTTGGTGTGCTACTGCTTGAAATTGTGACCGGTCGAAGACCTGCACAGGCAGTTGATTCGGTTGGTTGGCAGAGCATTTTTGAATGGGCAACGCCTCTCGTGCAGGCTCACCGTTACCTAGATCTCTTGGATCCTCATATAACAGCCACTTCCACTTCTGAAATTCCAGAGGCTGGTGTTCAGAAAGTCGTGGACCTTGTGTATGCTTGCACACAGCATGTTCCGTCCATGCGTCCTAGAATGTCGCACGTTGTTCATCAGCTGCAACAATTGGCTCCCTCACCTCTCACACATCTCACTATGAAGTAA 1707 44.05 MLRVWVMALTEVKTLYLQFFLLFILIWVSRMGVSDTMFNDSLSGHSVVSRNENPKGRCPHGWFISPNKTKCYGFMSSPKSWNDSETQCNGFGGNLAALITCQEFSFAQDLCNGTLGGCWVGGRAFNSSNDFVWKWSDNVSKWNDSIIPRTTLQSNCKNVSCRMNDLVETCTLIFGGPATPFLRDEKCSSSHPFICMINLDDRCHRMHCHKDYLVILAVVSGLIFCTTLAVVIWLLAHKRSKKRRRSRKPSNPAASALVPPSWKVFTKEELRSITKNFSEGNRLLGDTKTGGTYIGLLPDGSRVAIKRLKKSSFQRKKEFHSEIARVARLRHPNLVALKGCCYDHGDRYIVYEFIVNGPLDRWLHHVPRGGRYLDWTMRMKIATTLAQGIAFLHDKVKPHVVHRDIRASNVLLDEEFGAHLMGVGLSKLVAYEVMHERTVMAGGTYGYLAPEFVYRNELTTKSDVYSFGVLLLEIVTGRRPAQAVDSVGWQSIFEWATPLVQAHRYLDLLDPHITATSTSEIPEAGVQKVVDLVYACTQHVPSMRPRMSHVVHQLQQLAPSPLTHLTMK 568
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4758811 4761361 + CmPI595203_03g010190.1 Cmu03g1019 411805
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu03g1019 568 ProSiteProfiles C-type lectin domain profile. 67 196 IPR001304 -
Cmu03g1019 568 Gene3D Transferase(Phosphotransferase) domain 1 354 559 - -
Cmu03g1019 568 Pfam Protein tyrosine and serine/threonine kinase 285 554 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu03g1019 568 FunFam C-type lectin receptor-like tyrosine-protein kinase 255 353 - -
Cmu03g1019 568 Gene3D Phosphorylase Kinase; domain 1 236 353 - -
Cmu03g1019 568 SMART CLECT_2 58 196 IPR001304 -
Cmu03g1019 568 ProSiteProfiles Protein kinase domain profile. 278 567 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu03g1019 568 PANTHER OS01G0750732 PROTEIN 171 557 IPR050885 -
Cmu03g1019 568 SUPERFAMILY C-type lectin-like 58 197 IPR016187 -
Cmu03g1019 568 FunFam C-type lectin receptor-like tyrosine-protein kinase At1g52310 354 568 - -
Cmu03g1019 568 Gene3D - 41 199 IPR016186 -
Cmu03g1019 568 Pfam Lectin C-type domain 78 196 IPR001304 -
Cmu03g1019 568 ProSitePatterns Tyrosine protein kinases specific active-site signature. 400 412 IPR008266 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu03g1019 568 SUPERFAMILY Protein kinase-like (PK-like) 251 554 IPR011009 -
Cmu03g1019 568 SMART tyrkin_6 281 554 IPR020635 GO:0004713(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu03g1019 Cmu-Chr3:4758811 Cmu07g1225 Cmu-Chr7:27553333 7.60E-57 dispersed
Cmu03g1019 Cmu-Chr3:4758811 Cmu05g2378 Cmu-Chr5:33008169 1.70E-56 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75373 PF07714 PK_Tyr_Ser-Thr 1.90E-40 CL0016 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu03g1019 - - - 0.0