Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu03g1053 ATGGCCTCAAAATCCTCCCACCTTCTACTAATTCTTCTCTTCATTCTCTCATTCATCAGTTCCTCCCTCCAAGATTACTACACTCCCAACAAGAAAAATATGAACATAATCGACTCTTGCTGGCGAAAAACCTCCAACTGGGCCAAAAACCGCCAAGCCTTAGCCGATTGCGCCGTTGGCTACGGCAAGGACGCAATCGGAGGCAAATTTGGCACCATTTACGTCGTCACCGACCCTTCCGACAACCCTTCAAACCCGAAATACGGAACGTTACGTTACGGCGTGATCCAAAACAAGCCATTGTGGATTGTGTTTGGTAAGGACATGGTTATTGTGTTGAAGAATGAGCTGATGGTAAATAGTTACAAGACCATTGATGGGCGTGGAGTTAAAGTGGAAATTGCTTATGGGCCTTGTATTACGGTTCAAAGGGTTAGCCATGTAATTATACATGGAATTAGTATTCATGATTGTAAGCCTGGTAAAGCTGGGCTTGTTAGAGACAGTGTTTCGCATGTTGGGAAGCGACAAGGGTCTGATGGTGATGCTATTTCTGTGTTCGGTTCTTCCCATGTTTGGATTGATCATTGTTTCTTAGCTCGATGTACTGATGGTCTTGTTGATGTTATTCATGCTTCCACTGCTGTTACTATCTCAAATAACTACTTCTCCCAACATGATAAGGTGATGTTACTTGGACATAATGATGGGTTCACTGAAGATAAAATTATGAGAGTCACCATTGTTTTCAACCGCTTCGGTGCTGGCCTTATCGAGAGGATGCCAAGGGTTAGGTTTGGTTATGCCCATGTAGCGAACAATAGATACGACGAGTGGAAAATGTATGCCATTGGTGGAAGTGCAAACCCCACAATCTTCAGTGAAGGAAACTACTTTGTAGCTCCCCGAAATTCTTATGCCAAGCAGGTTACAAAGAGGGAGGTTAATAATGGGTGGAAGAACTGGAAATGGAGATCCTCCAGAGATGTGTTCTTAAATGGTGCTTATTTTGTGCCATCAGGATGGGGAAGCTGCACCCCAATTTACACAAAAGCTCAGTCTTTTCCAGTGGCTCCTGGCTCTATGGTTCCTGCTTTGACTGAAAATGCAGGCCCACTTCCTTGTTTAATCGGCAAACCTTGCTAA 1146 44.07 MASKSSHLLLILLFILSFISSSLQDYYTPNKKNMNIIDSCWRKTSNWAKNRQALADCAVGYGKDAIGGKFGTIYVVTDPSDNPSNPKYGTLRYGVIQNKPLWIVFGKDMVIVLKNELMVNSYKTIDGRGVKVEIAYGPCITVQRVSHVIIHGISIHDCKPGKAGLVRDSVSHVGKRQGSDGDAISVFGSSHVWIDHCFLARCTDGLVDVIHASTAVTISNNYFSQHDKVMLLGHNDGFTEDKIMRVTIVFNRFGAGLIERMPRVRFGYAHVANNRYDEWKMYAIGGSANPTIFSEGNYFVAPRNSYAKQVTKREVNNGWKNWKWRSSRDVFLNGAYFVPSGWGSCTPIYTKAQSFPVAPGSMVPALTENAGPLPCLIGKPC 381
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5074673 5076690 + CmPI595203_03g010530.1 Cmu03g1053 411839
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu03g1053 381 Gene3D - 34 374 IPR012334 -
Cmu03g1053 381 Pfam Pectate lyase 115 299 IPR002022 -
Cmu03g1053 381 SMART amb_all 108 305 IPR002022 -
Cmu03g1053 381 PANTHER PECTATE LYASE 18-RELATED 11 376 IPR045032 GO:0030570(InterPro)
Cmu03g1053 381 PRINTS Pollen allergen Amb family signature 80 105 IPR018082 -
Cmu03g1053 381 PRINTS Pollen allergen Amb family signature 116 132 IPR018082 -
Cmu03g1053 381 PRINTS Pollen allergen Amb family signature 322 346 IPR018082 -
Cmu03g1053 381 PRINTS Pollen allergen Amb family signature 282 301 IPR018082 -
Cmu03g1053 381 PRINTS Pollen allergen Amb family signature 260 279 IPR018082 -
Cmu03g1053 381 PRINTS Pollen allergen Amb family signature 180 201 IPR018082 -
Cmu03g1053 381 PRINTS Pollen allergen Amb family signature 57 74 IPR018082 -
Cmu03g1053 381 PRINTS Pollen allergen Amb family signature 352 375 IPR018082 -
Cmu03g1053 381 SUPERFAMILY Pectin lyase-like 34 372 IPR011050 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu03g1053 Cmu-Chr3:5074673 Cmu09g1873 Cmu-Chr9:34862403 1.30E-121 dispersed
Cmu01g2120 Cmu-Chr1:33972121 Cmu03g1053 Cmu-Chr3:5074673 1.90E-165 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu03g1053 K01728 - csv:101211379 734.947