Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cmu03g1071 | ATGTCTTGTTCAAATCTGACTATGTGGGTGTCTTCAAAACCCACCGTTTCTGATGCATCCTCCCTTTCTTTCCGCTCATTTTTGAGCCCTTTTCAGCTTCCTTCCCAGAATTCGAGCTCAACTTACCCTGGCCGATCATGCTCAGTTTCTCCAATCCACTGTGGTCTTCGGGAGCTTCGAGACCGTATCGATTCGGTGAAGAACACCCAGAAGATCACTGAAGCTATGAAGCTTGTTGCTGCTGCCAAAGTCCGCAGAGCTCAAGAAGCTGTTGTAAATGGAAGACCCTTCTCAGAAGCTTTGGTTGAGGTTCTTTACAACATCAATGAGCAACTTCAAACAGAAGATGTCGATGTTCCTTTAACCAAAGTAAGACCTGTTAAGAAAGTTGCATTAGTTGTTGTCACTGGTGACCGAGGTCTTTGCGGTGGTTTCAACAACAGTATCATTAAGAAAGCTGAAGCTAGAATATCGGAATTGAAGGCACTTGGTCTTGATTACACTGTCATTAGCGTTGGTAAGAAGGGTAATTCCTATTTCCTTCGCCGGCCTTACATTCCAGTTGATAAGTTCCTTGAAGGTGGCACTCTTCCCACAGCTAAAGAAGCTCAAGCAATAGCTGATGATGTTTTCTCACTCTTTGTTAGTGAGGAAGTTGATAAAGTAGAGCTTTTGTACACCAAATTTGTGTCTTTGGTAAAATCTGATCCTGTTATTCACACTCTTCTTCCTCTCTCACCCAAGGGTGAGATCTGTGATATAAATGGAGTCTGTGTAGATGCTGCAGAAGATGAGTTTTTCAGGTTGACAACAAAGGAAGGGAAATTGACAGTTGAAAGGGATTCAGTGAGGACAAGCACATCAGATTTCTCCCCAATTTTGGAGTTTGAGCAAGACCCAGTTCAGATCTTGGATGCTTTATTGCCTCTGTATTTGAACAGCCAGATTTTGAGGGCATTGCAAGAGTCACTGGCCAGTGAACTTGCAGCTAGAATGAGTGCTATGAGTAATGCAACTGATAATGCTTCTGAGCTGAAGAGAACTCTGTCTATTGTTTACAATAGACAGCGCCAAGCTAAGATTACTGGAGAAATCTTGGAGATTGTTGCTGGTGCTAATGCCTTGACTTAA | 1131 | 42.97 | MSCSNLTMWVSSKPTVSDASSLSFRSFLSPFQLPSQNSSSTYPGRSCSVSPIHCGLRELRDRIDSVKNTQKITEAMKLVAAAKVRRAQEAVVNGRPFSEALVEVLYNINEQLQTEDVDVPLTKVRPVKKVALVVVTGDRGLCGGFNNSIIKKAEARISELKALGLDYTVISVGKKGNSYFLRRPYIPVDKFLEGGTLPTAKEAQAIADDVFSLFVSEEVDKVELLYTKFVSLVKSDPVIHTLLPLSPKGEICDINGVCVDAAEDEFFRLTTKEGKLTVERDSVRTSTSDFSPILEFEQDPVQILDALLPLYLNSQILRALQESLASELAARMSAMSNATDNASELKRTLSIVYNRQRQAKITGEILEIVAGANALT | 376 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 5219345 | 5220475 | - | CmPI595203_03g010710.1 | Cmu03g1071 | 411857 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cmu03g1071 | 376 | PANTHER | ATP SYNTHASE GAMMA CHAIN | 1 | 375 | IPR000131 | GO:0000275(PANTHER)|GO:0009535(PANTHER)|GO:0015986(PANTHER)|GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(PANTHER)|GO:0046933(InterPro) | |
| Cmu03g1071 | 376 | SUPERFAMILY | ATP synthase (F1-ATPase), gamma subunit | 55 | 375 | IPR035968 | GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro) | |
| Cmu03g1071 | 376 | Gene3D | ATP synthase, gamma subunit, helix hairpin domain | 272 | 375 | - | - | |
| Cmu03g1071 | 376 | NCBIfam | ATP synthase F1 subunit gamma | 55 | 375 | IPR000131 | GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro) | |
| Cmu03g1071 | 376 | Pfam | ATP synthase | 56 | 375 | IPR000131 | GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro) | |
| Cmu03g1071 | 376 | FunFam | ATP synthase gamma chain, chloroplastic | 123 | 246 | - | - | |
| Cmu03g1071 | 376 | FunFam | ATP synthase gamma chain, chloroplastic | 272 | 375 | - | - | |
| Cmu03g1071 | 376 | ProSitePatterns | ATP synthase gamma subunit signature. | 361 | 374 | IPR023632 | - | |
| Cmu03g1071 | 376 | Gene3D | ATP synthase, gamma subunit, helix hairpin domain | 55 | 122 | - | - | |
| Cmu03g1071 | 376 | PRINTS | ATP synthase gamma subunit signature | 127 | 146 | IPR000131 | GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro) | |
| Cmu03g1071 | 376 | PRINTS | ATP synthase gamma subunit signature | 322 | 341 | IPR000131 | GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro) | |
| Cmu03g1071 | 376 | PRINTS | ATP synthase gamma subunit signature | 353 | 374 | IPR000131 | GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro) | |
| Cmu03g1071 | 376 | PRINTS | ATP synthase gamma subunit signature | 220 | 237 | IPR000131 | GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro) | |
| Cmu03g1071 | 376 | Gene3D | - | 123 | 246 | - | - | |
| Cmu03g1071 | 376 | CDD | F1-ATPase_gamma | 56 | 372 | IPR000131 | GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro) | |
| Cmu03g1071 | 376 | Hamap | ATP synthase gamma chain [atpG]. | 53 | 375 | IPR000131 | GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro) | |
| Cmu03g1071 | 376 | FunFam | ATP synthase gamma chain, chloroplastic | 54 | 121 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cmu04g1221 | Cmu-Chr4:26700729 | Cmu03g1071 | Cmu-Chr3:5219345 | 1.30E-18 | transposed | |
| Cmu10g1345 | Cmu-Chr10:6408510 | Cmu03g1071 | Cmu-Chr3:5219345 | 2.50E-103 | transposed | |
| Cmu01g2142 | Cmu-Chr1:34102383 | Cmu03g1071 | Cmu-Chr3:5219345 | 2.10E-172 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cmu03g1071 | K02115 | - | csv:101214408 | 671.774 |