Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu03g1103 ATGCTGAATTTGGCCAATATTTTCGTCTTCCACCTCTGTTTCCATATCCATGGACACGCTCAAACTCTTTACATTTGCTTACCCAACAACAACTTCACTTCCAATAGCACCTACCAGTCCAGCCTTAATCTCCTCTTTTCAACTCTCTCCACCAACGGATTCTTCAATTCTTCCGTCGTCCGTACACCAAGCGACACCGTTTACGGCGTCTTCCAGTGCCGTGGAGACACCACCGACGGCTCCTGCCGTGATTGCGTAATGGAAGCCACCAGAAACATAGCCCATCAATTCTGTCCCTTTAGGGAAAGCGCTGTGGTTTGGTATGACGATTGTATGTTGCGTTATTCCGACCAATTTTTCTTTTCTCTTGTGTCTACTGAGCCAAATTACGTCTTAGATAGCCGCGTTAATATTGGGTTCGACACGGCCCGGTTTAACCAAGTGTTGATGGCCACGTTGACTGCCACGGCGGCTAATGACTCCTCAAATGGTGGGAAAAGAATTTTGTTTCCAATCTGTTATGTTCGTTACGAACTTTATCCATTTTACCAACTCACTAGGACTAACCCGGTAACAACTGATCCTCCACCACCACCTCCTTCCTCAGCTATAAATGAGATCAACAATGTGGAAGCTCTTCAATTTCATTTCAATCAATTGATGCTGCTACTAACAGTTTCTCAGAGGAAAATAGGGTGGGTGAAGGGGAGGCTTGAAAATGGACAAGAGATAGCAGTGAAAAGATTGTCAAGAGGATCCTTACAAGGTTCTGAAGAGTTCAAGAATGAGGTCATATTGGTTGCTAAGCTTCAACATAGAAATTTAGTAAGACTATTGGGATTTTGCTTGGAGGGTGGAGAAAAGATACTTATCTATGAATACATTCCCAACAAAAGCCTTGACTATTTCCTATTTGATACTGAGGGACAGAAAGTGTTAGATTGGTTGAGTCGACATAAGATCATGAATGGAATTGCTCGAGGAATGTTATATTTACATGAAGATTCTCGACTTAGAGTTATTCATTGTGATCTTAAAGCTAGCAATGTCTTGTTAGATGAGGAAATGAATCCAAAGATTTCGGATTTTGGTATGGCAAGAATTATTCAAATGGATGAAACTCAAAGAAATACACGTCGAATTGCTGGTACCTACGGTTACATGTCTCCTGAATATGCAATGCACGGAAACTTCTCTACCAAATCTGACGTGTATAGCTTTGGAGTGTTGATGTTGGAAATTATAACTGGAAAGAAAAACTACACCTTTTATTTGTCAGGTCCTGCGGATGACATGTTGAGCTACGCTTGGAAGCTATGGAATGATGAAACTCCATTAGATCTACTCGACTCGAGTTTAAGAGACAAATACTCAAGGAATATGGTACTTAGATGCATCCATATTGCTTTACTTTGTGTTCACGATGATCCTGGACGGAGACCTTCCATGGCATCCATTGTTCTTATGTTGAATAGTTATTCGGTTACTTTGCCTGAACCTAATGAGCCAACGTTCTTCAAGAGCAATAGAAACAATGAGATTGCCATAGATGGTGATCAATCCAATAGACCGTCTTCCAATACAGTATCTGTAACTGAAATGTACCCACGATGA 1614 41.33 MLNLANIFVFHLCFHIHGHAQTLYICLPNNNFTSNSTYQSSLNLLFSTLSTNGFFNSSVVRTPSDTVYGVFQCRGDTTDGSCRDCVMEATRNIAHQFCPFRESAVVWYDDCMLRYSDQFFFSLVSTEPNYVLDSRVNIGFDTARFNQVLMATLTATAANDSSNGGKRILFPICYVRYELYPFYQLTRTNPVTTDPPPPPPSSAINEINNVEALQFHFNQLMLLLTVSQRKIGWVKGRLENGQEIAVKRLSRGSLQGSEEFKNEVILVAKLQHRNLVRLLGFCLEGGEKILIYEYIPNKSLDYFLFDTEGQKVLDWLSRHKIMNGIARGMLYLHEDSRLRVIHCDLKASNVLLDEEMNPKISDFGMARIIQMDETQRNTRRIAGTYGYMSPEYAMHGNFSTKSDVYSFGVLMLEIITGKKNYTFYLSGPADDMLSYAWKLWNDETPLDLLDSSLRDKYSRNMVLRCIHIALLCVHDDPGRRPSMASIVLMLNSYSVTLPEPNEPTFFKSNRNNEIAIDGDQSNRPSSNTVSVTEMYPR 537
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5467453 5470005 + CmPI595203_03g011030.1 Cmu03g1103 411889
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu03g1103 537 ProSiteProfiles Gnk2-homologous domain profile. 20 120 IPR002902 -
Cmu03g1103 537 MobiDBLite consensus disorder prediction 516 537 - -
Cmu03g1103 537 SMART serkin_6 225 494 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu03g1103 537 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 53 506 - GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Cmu03g1103 537 ProSitePatterns Serine/Threonine protein kinases active-site signature. 340 352 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu03g1103 537 FunFam Uncharacterized protein 228 294 - -
Cmu03g1103 537 FunFam cysteine-rich receptor-like protein kinase 10 295 497 - -
Cmu03g1103 537 CDD STKc_IRAK 235 491 - -
Cmu03g1103 537 Gene3D Transferase(Phosphotransferase) domain 1 295 503 - -
Cmu03g1103 537 Pfam Salt stress response/antifungal 26 118 IPR002902 -
Cmu03g1103 537 Gene3D - 19 120 IPR038408 -
Cmu03g1103 537 Pfam Protein tyrosine and serine/threonine kinase 238 488 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu03g1103 537 ProSiteProfiles Protein kinase domain profile. 220 505 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu03g1103 537 Gene3D Phosphorylase Kinase; domain 1 204 294 - -
Cmu03g1103 537 SUPERFAMILY Protein kinase-like (PK-like) 235 520 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu03g1103 Cmu-Chr3:5467453 Cmu03g1112 Cmu-Chr3:5528456 1.50E-102 dispersed
Cmu03g1106 Cmu-Chr3:5487341 Cmu03g1103 Cmu-Chr3:5467453 4.20E-25 dispersed
Cmu07g0626 Cmu-Chr7:8968841 Cmu03g1103 Cmu-Chr3:5467453 4.10E-06 dispersed
Cmu03g1103 Cmu-Chr3:5467453 Cmu03g1105 Cmu-Chr3:5477034 1.20E-181 proximal
Cmu01g2168 Cmu-Chr1:34262115 Cmu03g1103 Cmu-Chr3:5467453 8.00E-117 wgd
Cmu02g0172 Cmu-Chr2:1651062 Cmu03g1103 Cmu-Chr3:5467453 2.70E-12 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75375 PF07714 PK_Tyr_Ser-Thr 5.60E-45 CL0016 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu03g1103 - - - 0.0