Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu03g1105 ATGCTCAATTTTCTTACTTTCCTCTTCTTCCTCAATCTCCTTACCCATGGAAACGCTCAGACCCCAGTTCCTTACCCATATCGCAGTTGCTTGTCCGGCAATTTCACTCACAACAGCACCTATCAGTCCAACCTCAATCTTCTCTTTTCAAATCTCTCCACCAACGGCCCCCCAAGAAACAGATTCTTCAATACTTCCGTCGGCCGACCCCCAAACGACGCCGTTTACGGTCTCTTCCAGTGCCGTGGAGACGTCACCGACGCCGTCTGTCGTACTTTCTTAGCCACCGCAACCAGAGACGCAGAGCGGCTGTACTGTCCTCTAAGAAATGGCGCTGTGATTTGGTACGACGAAATCATATTCCGCTATTCCGACCAACCTTTCTTTTCCACGGTTTCCTCAAACCCAAGTATGCAGTTACAGAATACGGGTAATATAGACGTCGACAAGGCTCGATTCAACCAACTAGTCATGTCCACGTTGAGAGCCACCGCGGCTCAGGCGGCGAACGCCTCTTTGGTGGGCAATTTGTTTGCGACCCAGATGGCTAATTTTACAGAAGACCTAACCCTTTACACGTTAGCTCAGTGTACCGGCGATTTGTCCAATACGGATTGCGAAGGATGCTTACGCCAAGCTACCAACTCAATTCCAAGTTGTTGTAGTAATAAACGAGGCGGTCGCGTTCTGCTTCCCAGCTGTTATGTTCGTTACGAAGTTTACATGTTTTACGAATTAACGCCGACGAATTCCTTACCGCCTCCGGCAACACCGCCTCTTCTTCCTTCTTCTCCTCCGCCAGGGGAAAGAAGGTCCTCAACGGTGTTAATTGTGGCCATTGTAGCTCCAATTACTGTCTCCATACTGCTCTTTGTAGTGGGATGTTGTTTCCTGCGCCTGAGAGCGAAGAACAGATACTCTGCTGCGAAGGAAGATAGTGTTGTTAATGAGATGACGACTGTGGAATCTCTGCAATTTGATTTCAAAACAATCGAAGCTGCTACTAACAAATTCTCAGAGGAAAACAGGTTGGGAGAAGGTGGATTTGGTGCTGTCTTCAAGGGTAGGCTTGAAAATGGACAAGAGATAGCAGTGAAGAGGCTGTCAAGAGGATCTTTGCAAGGTTCTGAAGAGTTCAAGAATGAGGTTATGTTGGTTGCTAAGCTTCAACATAGAAATCTTGTAAGGTTATTGGGATTCTGCTTGGAGGGGGAAGAAAAGATTCTCATCTATGAATACATTCCCAACAAAAGCCTTGACTTTTTCTTGTTTGATCTAGAGGGACAGAGGCAGTTGGATTGGTTGAAACGATATAAAATCATCAATGGAATTGCTCGAGGAATATTGTATCTGCATGAAGATTCTCGTCTTAGAATTATTCACCGTGATCTTAAAGCGAGTAACATCTTGTTAGACAAAGATATGAATGCAAAAATTTCAGACTTTGGCATGGCAAGGATTATTCAAATGGATCAAACCCAAGGAAATACAAGTAGGATTGTTGGTACCTATGGTTACATGTCTCCTGAGTATGCAATGCACGGAAATTTCTCAATGAAATCTGATGTGTATAGCTTTGGAGTGTTAGTGTTAGAGATTTTAAGTGGTAAGAAAAACAACACCTTTTACTTGTCGGATCTTGCCGAAGACATTTTGACATATGCTTGGAAATTGTGGAAGGATGGAACGCCATTAGAGTTATTGGATCCAATGTTGAGAGATAATTACTCGAGAAATGAGGTGGTTAGATGCATTCATATTGCTTTATTATGTGTTCAAGAGGATCCTAACAGCAGACCTTCCATGGCTTCCATTGTTCTTATGCTTAATAGTTATTCCGTTACTTTGCCATTGCCTGAAGAGCCAGCATTCTTCATGCGTAGTAAAGACAATCACATTACAATGGGCAGCGATCATTCTACCAATAAGTCTATTCAGTTTTCTGTTAACGAAACATCTATATCTGAGTTGCATCCACGATGA 1983 43.62 MLNFLTFLFFLNLLTHGNAQTPVPYPYRSCLSGNFTHNSTYQSNLNLLFSNLSTNGPPRNRFFNTSVGRPPNDAVYGLFQCRGDVTDAVCRTFLATATRDAERLYCPLRNGAVIWYDEIIFRYSDQPFFSTVSSNPSMQLQNTGNIDVDKARFNQLVMSTLRATAAQAANASLVGNLFATQMANFTEDLTLYTLAQCTGDLSNTDCEGCLRQATNSIPSCCSNKRGGRVLLPSCYVRYEVYMFYELTPTNSLPPPATPPLLPSSPPPGERRSSTVLIVAIVAPITVSILLFVVGCCFLRLRAKNRYSAAKEDSVVNEMTTVESLQFDFKTIEAATNKFSEENRLGEGGFGAVFKGRLENGQEIAVKRLSRGSLQGSEEFKNEVMLVAKLQHRNLVRLLGFCLEGEEKILIYEYIPNKSLDFFLFDLEGQRQLDWLKRYKIINGIARGILYLHEDSRLRIIHRDLKASNILLDKDMNAKISDFGMARIIQMDQTQGNTSRIVGTYGYMSPEYAMHGNFSMKSDVYSFGVLVLEILSGKKNNTFYLSDLAEDILTYAWKLWKDGTPLELLDPMLRDNYSRNEVVRCIHIALLCVQEDPNSRPSMASIVLMLNSYSVTLPLPEEPAFFMRSKDNHITMGSDHSTNKSIQFSVNETSISELHPR 660
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5477034 5480065 + CmPI595203_03g011050.1 Cmu03g1105 411891
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu03g1105 660 ProSitePatterns Serine/Threonine protein kinases active-site signature. 459 471 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu03g1105 660 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 157 625 - GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)|GO:0042742(PANTHER)
Cmu03g1105 660 FunFam Cysteine-rich receptor-like protein kinase 10 300 413 - -
Cmu03g1105 660 Gene3D - 135 243 IPR038408 -
Cmu03g1105 660 Gene3D - 24 128 IPR038408 -
Cmu03g1105 660 ProSiteProfiles Gnk2-homologous domain profile. 23 128 IPR002902 -
Cmu03g1105 660 Pfam Protein tyrosine and serine/threonine kinase 341 607 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu03g1105 660 Pfam Salt stress response/antifungal 33 126 IPR002902 -
Cmu03g1105 660 Pfam Salt stress response/antifungal 150 240 IPR002902 -
Cmu03g1105 660 ProSitePatterns Protein kinases ATP-binding region signature. 344 366 IPR017441 GO:0005524(InterPro)
Cmu03g1105 660 ProSiteProfiles Gnk2-homologous domain profile. 134 243 IPR002902 -
Cmu03g1105 660 FunFam cysteine-rich receptor-like protein kinase 10 414 616 - -
Cmu03g1105 660 SMART serkin_6 338 613 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu03g1105 660 FunFam Cysteine-rich receptor-like protein kinase 25 136 243 - -
Cmu03g1105 660 Gene3D Phosphorylase Kinase; domain 1 300 413 - -
Cmu03g1105 660 SUPERFAMILY Protein kinase-like (PK-like) 323 642 IPR011009 -
Cmu03g1105 660 CDD STKc_IRAK 344 610 - -
Cmu03g1105 660 ProSiteProfiles Protein kinase domain profile. 338 613 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu03g1105 660 Gene3D Transferase(Phosphotransferase) domain 1 414 616 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g2176 Cmu-Chr1:34309652 Cmu03g1105 Cmu-Chr3:5477034 8.10E-133 dispersed
Cmu01g2177 Cmu-Chr1:34315813 Cmu03g1105 Cmu-Chr3:5477034 3.80E-118 dispersed
Cmu02g0174 Cmu-Chr2:1666236 Cmu03g1105 Cmu-Chr3:5477034 3.60E-30 dispersed
Cmu03g1105 Cmu-Chr3:5477034 Cmu03g1113 Cmu-Chr3:5536887 1.80E-134 dispersed
Cmu03g1107 Cmu-Chr3:5490895 Cmu03g1105 Cmu-Chr3:5477034 5.70E-48 dispersed
Cmu03g1110 Cmu-Chr3:5505639 Cmu03g1105 Cmu-Chr3:5477034 9.40E-20 dispersed
Cmu05g0423 Cmu-Chr5:3578778 Cmu03g1105 Cmu-Chr3:5477034 3.10E-09 dispersed
Cmu06g0723 Cmu-Chr6:8470087 Cmu03g1105 Cmu-Chr3:5477034 8.80E-12 dispersed
Cmu03g1103 Cmu-Chr3:5467453 Cmu03g1105 Cmu-Chr3:5477034 1.20E-181 proximal
Cmu03g1105 Cmu-Chr3:5477034 Cmu03g1106 Cmu-Chr3:5487341 1.40E-49 tandem
Cmu01g0623 Cmu-Chr1:6909168 Cmu03g1105 Cmu-Chr3:5477034 1.20E-13 transposed
Cmu06g0053 Cmu-Chr6:504632 Cmu03g1105 Cmu-Chr3:5477034 3.50E-13 transposed
Cmu01g2170 Cmu-Chr1:34272234 Cmu03g1105 Cmu-Chr3:5477034 9.90E-25 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75376 PF07714 PK_Tyr_Ser-Thr 8.70E-50 CL0016 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu03g1105 - - - 0.0