Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cmu03g1114 | ATGGGGTCGCCTGAAATTACGGATTGGGTGTTCGATTACGGTATGATTGAGGACATTCCTGTCCCCGGTGGTGACCTACCTTCGCTGGATCTTCCCTCTTTCACTTTGCCTTCTTGCGATTTCACTGCATCCTTCAGGGCAGACTTCGATGACCCACTTGGAATGGCAGACGATGTAAAAGAATCTGGGTCCAGGAAAAGGATGAGCTCTGGATCAAATGCATTTGAGTCCAAGGCACATAAAGAAAAAATGAGGAGGGATAAACTAAATGACAGGTTTCTGGAATTGAATTCCATCCTCAATCATGGAAGGCCTCCCAAAATTGACAAGTCTGTTATTTTGGGTGATGCAGTTCGAATGATTATACAGCTAAGGGATGAGGCTCAGAAGCTGAAGGAGTCTAATGAGAGTTCTTTGGAGAAGATTAATGAAATGAAGGCTGAAAAGAATGAACTACGGGACGAAAAACAGAGGCTGAAAGAAGCAAAAGACAGCCTTGAAAAGAAAATGAAGGCCTTCAATACACAACCAACCTTCTTGCCTCACCCTCCTGCAATTCCTGCTGCATTTGCTTCTCCAAATCAGGTTGTTGGGGGGAAATTGGTACCTGTGATTGGATATCCAGGAGTATCCATGTGGCGGTTTATGCCTCCGGGTGCCATTGATACATCACAAGACCATGTTCTTCGGCCACCAGTCGCCTGA | 705 | 45.53 | MGSPEITDWVFDYGMIEDIPVPGGDLPSLDLPSFTLPSCDFTASFRADFDDPLGMADDVKESGSRKRMSSGSNAFESKAHKEKMRRDKLNDRFLELNSILNHGRPPKIDKSVILGDAVRMIIQLRDEAQKLKESNESSLEKINEMKAEKNELRDEKQRLKEAKDSLEKKMKAFNTQPTFLPHPPAIPAAFASPNQVVGGKLVPVIGYPGVSMWRFMPPGAIDTSQDHVLRPPVA | 234 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 5544064 | 5547214 | - | CmPI595203_03g011140.1 | Cmu03g1114 | 411900 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cmu03g1114 | 234 | PANTHER | BHLH TRANSCRIPTION FACTOR | 8 | 234 | IPR044818 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0006879(InterPro)|GO:0046983(InterPro) | |
| Cmu03g1114 | 234 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 65 | 136 | IPR036638 | GO:0046983(InterPro) | |
| Cmu03g1114 | 234 | CDD | bHLH_AtILR3_like | 78 | 153 | - | - | |
| Cmu03g1114 | 234 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 73 | 124 | IPR011598 | GO:0046983(InterPro) | |
| Cmu03g1114 | 234 | SMART | finulus | 79 | 130 | IPR011598 | GO:0046983(InterPro) | |
| Cmu03g1114 | 234 | Pfam | Helix-loop-helix DNA-binding domain | 77 | 125 | IPR011598 | GO:0046983(InterPro) | |
| Cmu03g1114 | 234 | MobiDBLite | consensus disorder prediction | 56 | 82 | - | - | |
| Cmu03g1114 | 234 | Coils | Coil | 121 | 176 | - | - | |
| Cmu03g1114 | 234 | Gene3D | - | 76 | 150 | IPR036638 | GO:0046983(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cmu03g1114 | Cmu-Chr3:5544064 | Cmu10g1383 | Cmu-Chr10:6867646 | 4.50E-56 | dispersed | |
| Cmu03g1114 | Cmu-Chr3:5544064 | Cmu05g1535 | Cmu-Chr5:24033478 | 1.60E-45 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 5891 | PF00010 | HLH | 4.20E-09 | No_clan | Cmu | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cmu03g1114 | - | - | - | 0.0 |