Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu03g1139 ATGACGAAACCCCAAATGAATTGGCGCTTTTCCGGTCGTCGTCTTCTTCTTCTTCTTTCACTAATTACATGCTTCTCTTCAAAGTTTTGCTATGGTGATACAATTACATCAGCTGATTTCATCAAATACCCTGCAACCAAAATTTCCAATGCCACTTCCTTCGAATTGGGCTGGTTCTCACCTCTTAATTCCACAGCCCAATACGTCGGAATTTGGTTCCATCAAGTTTCCATACAAACTATAGTATGGGTTGCTAACAAAGACACCCCTCTCAACAATACTTCCGGGATTTTCACCATCTCCAACGATGGAAATCTTGTGATCTTAGACGAAAACAACACCATCATTTGGTCTTCAAATGTTACTTCTCCTACAGTCAACACAACCGCCCGAATTCTAGATTCAGGCAACCTTGTCTTGGAAGATCCTGCTTCCGGATTGGTTATTTGGGAGAGTTTCAAACACCCTTCCAATATATTCTTGCCTTCCATGGAGCTTGTCACAAACAAAAGAACTCAAGAGAAGCTTGAAATTACTTCATGGAAAACCCCTTCCGATCCATCTACAGGTAACTTTTCTTTAGCGTTGGATGTTGTTAATATTCCTGAAGCTGTGATTTGGAATAATGGAGGTAACCCATATTGGAGATCTGGTCCATGGAACGGTCATACTTTTATTGGAATACCCGAAATGATCTCTGTTTATCTCATTGGGTTTAATCTTGCGATTGAAGACCAAATTTATTATTTCTCAATTACTTACAATAATGACAATCAATTACTTTATACCATGGTATTAAGCCCAGAAGGGAATTTGGAGCAACAGTATTGGAATTCTTCGAAGAAAAATTGGGAAGCGAGTTGGTCGGCTTTTAGAACAGAATGTGATTATTACGGTGTTTGTGGTGCGTTTGGGGTCTGTAATGCGAATGCATCCCCTGTTTGCAGCTGTTTAACAGGGTTTAAACCAAAGGATGAGAAGGAATGGAATCGAGGAAATTGGAGTAATGGGTGTGTGAGAAATACGGCATTGCAGTGTGAGAAGTCCAATAACGCCACTACCAGCGGTGAGGAAGATGGATTTTTGGAAGTGGAATTGGTTAAAGTTCCATCTTTGGCAGAGTGGTCTAATTTCTCTACTTCAGCGGATGATTGCAAACAAGAATGCTTTGAGAATTGCTTGTGTAGTGCTTATGCATATGAAAATGGTATTGGTTGTATGCTATGGAAAAGGGACTTAATTGATGTACAGAAATTTGAAAGCCTTGGATCCAATCTTCATCTTCGACTGGCTCATGCAGACTTGCAAACAATTAATGATGTAAAAAGCAAGAGTACAGGAATTATTATAGCCATAGTGCTACCAGCAACACTTATGATCTTCATCATTGCCGTATACTTCTGGTGGAGATGGAAGGCTAGCAAAAATGAGCATAGCAAAAAAGGGGGAAGACTGAAGTTGAGAAGCGATGACATGATTGGGGACCAAAGTAAATTTGAAGAACTACCTCTTTATGATTTTGAGAAGCTGGCAATTGCAACAAACAGTTTTGATTTAAGTCAAAAACTTGGACAAGGTGGCTTTGGTCCCGTATATAAGGGAAGATTGCTAGATGGACAAGAAATAGCAATAAAAAGGCTTTCAAGAGCTTCTAAACAAGGGTATGAAGAATTTATAAATGAAGTGATTGTGATTTCTAAACTACAGCATAGAAATCTTGTTCAGCTTCTGGGTTGTTGCATTGAAGGAGAAGAGAAGATGCTAATATATGAGTATATGCCCAACCTAAGTCTGGATGCATTCATTTTTGACTCTACCAAACAAAAACTCTTAGATTGGAGAAAAAGATTTAACATTGTTGATGGAATTGCTCGAGGTCTCCTTTACCTCCATAGAGATTCAAGATTGAGAATTATTCATAGGGATTTGAAGGCAAGTAATATTTTATTAGACAAAGATATGAATCCTAAAATTTCAGACTTTGGTATGGCAAGAATTTTTGGCAGTAATGAAGTGGAAGCCAATACTATAAGGGTTGTTGGAACTTATGGATATATGTCGCCCGAGTATGCAATGCAAGGTCAATTTTCAGAGAAATCAGATGTTTTTAGTTTTGGAGTTTTATTACTTGAAATTATAAGTGGAAAAAGGAACACAGGATTCAATCGCCATGAACATGCTTTAAGCTTATTGGAATTTGCATGGAAGTTGTGGATAGAAGACAATCTTATTGCTTTGATCGATCCCACAATGCATGAGTTGTGTTATCAATCAGAAATTTTGCGGTGCATCCAAGTAGGACTCTTATGTGTTGAAGAATCTATAAATGATAGACCAAATGTTGTTGCCATTATTTCAATGCTGAACAGTGAAATTGTAGATCTTCCTATTCCAAAGCAGCCTAGCTTTATTGGCAGACCAACTCAAAGTAATTTTTGCTATGGCAGCAATACAATTACATCAACTGATTTCATCAAATACCCTGCAACCAAAATTTCCAATGCCAACTCCTTCCAATTGGGCTGGTTCTCACCTATTAATTCCACAGCCCAATACGTCGGAATTTGGTACCATCAAGTTTCCCTAAAAACTATAGTATGGGTTGCTAACAAAGACAACCCTCTCAACAATACTTCCGGAATTTTCACCATCTCCAACGATGGAAATCTTGTGATCTTAGACGAAAACAACACCATCATTTGGTCTTCAAATGTTACTTCTCCTACAGTCAACACAACCGCCCGCATTCTAGATTCAGGCAACCTTGTCTTGGAAGATCCTGCTTCCAGATTGGTTATTTGGGGGAGTTTCAAACACCCTTCCAATATACTCTTGCCTTCCATGGAGCTTGTCACAAGCAAAAGAACTCAAGAGACGCTTGAAATTACTTCATGGAAAACCCCTTCCGATCCATCTACAGGTAACTTTTCTTTAGCGTTGGATGTTGTTAATATTCCTGAAGCTGTGATTTGGAATAATGGAGGTAACCCATATTGGAGATCTGGTCCATGGAACGGTCATACTTTTATTGGAATACCCGAAATGATCTCTGTTTATCTCATTGGGTTTAATCTTGCTATCAAAGACCAAGTTTATTCTTTCTCAGTTTCTTACCATAACGACAATCAACTACTTTATAACATACGATTAAGCCCAAAAGGGAATCTAGTGCAGCAGTACTGGAATTCTTCGAAGAAAAATTGGGTTGGGACTTGGTCGGCTTTGAAAACACAATGCGATTATTACGGTGTTTGTGGTGCGTTTGGGCTCTGTAATGGCAAAGCGTCCCCTGTTTGCAGCTGTTTAACAGGGTTTAAACCAAAGGATGAAAAGGAATGGAAACGAGGGAATTGGAGTAATGGGTGTGTGAGAATTACGGCATTGCAGTGTGAGAAATCCAACAACCCCAACACCAGCGGTGAGGAAGATGGGTTTCTAAAAGTGGAATTTGTTAAAGTTCCATTTTTCTCAGAGTGCTCAAATTCCTCTACTTCAGCGGATAATTGCAAACAAAAGTGTTTTGAGAATTGCTTGTGTAGTGCTTATGCGTATGAAAATGGTATTGGTTGTATGCTATGGAGAAAAGACTTAATTGATGTACAGAAATTCGAAAGCCTTGGAGCCAGTCTTTACCTTCGACTGGCTCATGCAGACTTGCAAACAATTAATGATGTAAAAAGCAAGCGTGGAATTATTACAGTTATGGTGCTACTAGCAACGCTTATGATCGTCATCATTGCCATATACTCCCGGTGGAGATGGAAGGCTAGCCAAATTGAGGAGTATAACAAAAACGGGAAAAGATTGAATTTGAGAAGGGATGACATGATTAGGGACAAAAGTGGCTTTGGTCCCGTATATAAGGGAAGATTGTTAGATGGACAGGAAATAGCAATAAAGAGGCTTTCAAGAGCTTCTAGTCAAGGGTATGAGGAATTTATAAATGAAGTGATGGTGATTTCCAAACTACAACATAGAAATCTTGTACAGCTTCTCGGTTGTTGCATCGAAGAAGAAGAGAAGATGCTAATATACGAGTACATGCCCAACCTAAGTTTGGATGCATTCATCTTTGACCCCAATAAACAAAAACTCTTGAATTGGAGAAAAAGATTTAACATCATCGATGGGATTGCTCGAGGTCTTCTTTACCTTCATAGAGATTCAAGATTGAGAATTATTCATAGGGATTTGAAGGCAAGTAATATTTTATTAGACAAAGACATGAATCCTAAAATTTCAGACTTTGGTATGGCCAGAATATTTGGGAGTAATGAAGTGCAAGCCAATACTATAAGGGTTGTTGGAACTTATGGATATATGTCGCCTTAG 4332 38.71 MTKPQMNWRFSGRRLLLLLSLITCFSSKFCYGDTITSADFIKYPATKISNATSFELGWFSPLNSTAQYVGIWFHQVSIQTIVWVANKDTPLNNTSGIFTISNDGNLVILDENNTIIWSSNVTSPTVNTTARILDSGNLVLEDPASGLVIWESFKHPSNIFLPSMELVTNKRTQEKLEITSWKTPSDPSTGNFSLALDVVNIPEAVIWNNGGNPYWRSGPWNGHTFIGIPEMISVYLIGFNLAIEDQIYYFSITYNNDNQLLYTMVLSPEGNLEQQYWNSSKKNWEASWSAFRTECDYYGVCGAFGVCNANASPVCSCLTGFKPKDEKEWNRGNWSNGCVRNTALQCEKSNNATTSGEEDGFLEVELVKVPSLAEWSNFSTSADDCKQECFENCLCSAYAYENGIGCMLWKRDLIDVQKFESLGSNLHLRLAHADLQTINDVKSKSTGIIIAIVLPATLMIFIIAVYFWWRWKASKNEHSKKGGRLKLRSDDMIGDQSKFEELPLYDFEKLAIATNSFDLSQKLGQGGFGPVYKGRLLDGQEIAIKRLSRASKQGYEEFINEVIVISKLQHRNLVQLLGCCIEGEEKMLIYEYMPNLSLDAFIFDSTKQKLLDWRKRFNIVDGIARGLLYLHRDSRLRIIHRDLKASNILLDKDMNPKISDFGMARIFGSNEVEANTIRVVGTYGYMSPEYAMQGQFSEKSDVFSFGVLLLEIISGKRNTGFNRHEHALSLLEFAWKLWIEDNLIALIDPTMHELCYQSEILRCIQVGLLCVEESINDRPNVVAIISMLNSEIVDLPIPKQPSFIGRPTQSNFCYGSNTITSTDFIKYPATKISNANSFQLGWFSPINSTAQYVGIWYHQVSLKTIVWVANKDNPLNNTSGIFTISNDGNLVILDENNTIIWSSNVTSPTVNTTARILDSGNLVLEDPASRLVIWGSFKHPSNILLPSMELVTSKRTQETLEITSWKTPSDPSTGNFSLALDVVNIPEAVIWNNGGNPYWRSGPWNGHTFIGIPEMISVYLIGFNLAIKDQVYSFSVSYHNDNQLLYNIRLSPKGNLVQQYWNSSKKNWVGTWSALKTQCDYYGVCGAFGLCNGKASPVCSCLTGFKPKDEKEWKRGNWSNGCVRITALQCEKSNNPNTSGEEDGFLKVEFVKVPFFSECSNSSTSADNCKQKCFENCLCSAYAYENGIGCMLWRKDLIDVQKFESLGASLYLRLAHADLQTINDVKSKRGIITVMVLLATLMIVIIAIYSRWRWKASQIEEYNKNGKRLNLRRDDMIRDKSGFGPVYKGRLLDGQEIAIKRLSRASSQGYEEFINEVMVISKLQHRNLVQLLGCCIEEEEKMLIYEYMPNLSLDAFIFDPNKQKLLNWRKRFNIIDGIARGLLYLHRDSRLRIIHRDLKASNILLDKDMNPKISDFGMARIFGSNEVQANTIRVVGTYGYMSP 1443
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5822783 5833201 + CmPI595203_03g011390.1 Cmu03g1139 411925
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu03g1139 1443 CDD B_lectin 810 940 IPR001480 -
Cmu03g1139 1443 ProSiteProfiles PAN/Apple domain profile. 346 431 IPR003609 -
Cmu03g1139 1443 ProSiteProfiles Protein kinase domain profile. 517 793 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu03g1139 1443 ProSiteProfiles Bulb-type lectin domain profile. 816 937 IPR001480 -
Cmu03g1139 1443 FunFam receptor-like serine/threonine-protein kinase SD1-8 490 592 - -
Cmu03g1139 1443 SUPERFAMILY alpha-D-mannose-specific plant lectins 851 1005 IPR036426 -
Cmu03g1139 1443 FunFam cysteine-rich receptor-like protein kinase 10 1348 1443 - -
Cmu03g1139 1443 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 24 801 - -
Cmu03g1139 1443 Pfam S-locus glycoprotein domain 999 1108 IPR000858 GO:0048544(InterPro)
Cmu03g1139 1443 Pfam S-locus glycoprotein domain 215 324 IPR000858 GO:0048544(InterPro)
Cmu03g1139 1443 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 812 937 - -
Cmu03g1139 1443 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 593 796 - -
Cmu03g1139 1443 FunFam Uncharacterized protein 1283 1347 - -
Cmu03g1139 1443 SUPERFAMILY alpha-D-mannose-specific plant lectins 80 222 IPR036426 -
Cmu03g1139 1443 ProSiteProfiles Protein kinase domain profile. 1272 1443 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu03g1139 1443 SMART blect_4 38 156 IPR001480 -
Cmu03g1139 1443 SMART blect_4 822 940 IPR001480 -
Cmu03g1139 1443 Gene3D - 27 154 IPR036426 -
Cmu03g1139 1443 Gene3D - 813 937 IPR036426 -
Cmu03g1139 1443 CDD PAN_AP_plant 342 431 - -
Cmu03g1139 1443 ProSiteProfiles PAN/Apple domain profile. 1130 1215 IPR003609 -
Cmu03g1139 1443 CDD B_lectin 54 156 IPR001480 -
Cmu03g1139 1443 ProSiteProfiles Bulb-type lectin domain profile. 32 153 IPR001480 -
Cmu03g1139 1443 SUPERFAMILY Protein kinase-like (PK-like) 498 788 IPR011009 -
Cmu03g1139 1443 ProSitePatterns Serine/Threonine protein kinases active-site signature. 638 650 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu03g1139 1443 Gene3D Phosphorylase Kinase; domain 1 493 592 - -
Cmu03g1139 1443 SMART serkin_6 517 793 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu03g1139 1443 Gene3D Transferase(Phosphotransferase) domain 1 593 794 - -
Cmu03g1139 1443 Gene3D Transferase(Phosphotransferase) domain 1 1349 1443 - -
Cmu03g1139 1443 Pfam Protein tyrosine and serine/threonine kinase 1282 1427 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu03g1139 1443 Pfam Protein tyrosine and serine/threonine kinase 519 735 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu03g1139 1443 CDD PAN_AP_plant 1126 1215 - -
Cmu03g1139 1443 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 29 153 - -
Cmu03g1139 1443 Pfam D-mannose binding lectin 864 966 IPR001480 -
Cmu03g1139 1443 Pfam D-mannose binding lectin 80 182 IPR001480 -
Cmu03g1139 1443 CDD STKc_IRAK 523 789 - -
Cmu03g1139 1443 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1393 1405 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu03g1139 1443 Pfam PAN-like domain 1140 1200 IPR003609 -
Cmu03g1139 1443 Pfam PAN-like domain 356 416 IPR003609 -
Cmu03g1139 1443 Gene3D Phosphorylase Kinase; domain 1 1279 1348 - -
Cmu03g1139 1443 SMART ntp_6 356 430 IPR003609 -
Cmu03g1139 1443 SMART ntp_6 1140 1214 IPR003609 -
Cmu03g1139 1443 SUPERFAMILY Protein kinase-like (PK-like) 1281 1443 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g2189 Cmu-Chr1:34384853 Cmu03g1139 Cmu-Chr3:5822783 5.20E-211 dispersed
Cmu03g1136 Cmu-Chr3:5790182 Cmu03g1139 Cmu-Chr3:5822783 9.00E-286 dispersed
Cmu03g1137 Cmu-Chr3:5807839 Cmu03g1139 Cmu-Chr3:5822783 1.80E-285 dispersed
Cmu03g1139 Cmu-Chr3:5822783 Cmu03g1141 Cmu-Chr3:5852562 2.10E-18 dispersed
Cmu03g1138 Cmu-Chr3:5815515 Cmu03g1139 Cmu-Chr3:5822783 9.50E-282 tandem
Cmu03g1139 Cmu-Chr3:5822783 Cmu03g1140 Cmu-Chr3:5840411 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75388 PF07714 PK_Tyr_Ser-Thr 3.90E-47 CL0016 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu03g1139 - - - 0.0