Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu03g1140 ATGAGAAGAAGCATGAGAAAATTAAGACATGCAATTTCTCTTCTCCTCCTTTCATTGACATGCTTCTCTTCAAGATTTTGCTATGGCGACGATACGATTACATCAACAAATTTCATCAAAGACCCTGCAACTATTGTATCCAATGGCAGTGTCTTCAAATTGGGATTCTTCACACCTTTAAATTCTACCCACAGATATGTTGGAATTTGGTTTGACAAAATTTCTCCACAAACCATAGCATGGGTTGCAAACAGAGATAGCCCTCTGAATGATACTTCTGGGATTTTCACTATTTCCAAGGATGGGAATCTTGTGGTCTTAGATTCAAACAACACCATCCTTTGGTCTTCAAATGTTTCTTTTTCTTCTTCTTCTTCTTCTTCTTCTTCAGCAACCAACAACACAATCGCTCAAATTCTAGATTCTGGAAACTTGGTTTTGAAAGATACTACTTCCGGGGTTATTGTATGGGAGAGTTTCAAACACCCTTCTGATAAATTCTTGAATTCCATGAAGCTTATGACAAACACAAGAACAAATGAGCACGTGGACTTTATCTCATGGAGCTCGCCTTCCGATCCATCTACAGGTAACTTTTCATTTCTGCTGGATGTTCACAATATCCCTGAAGTTGTGGTTTTGAATGGTGGTAAAACTTATTGGCGATCTGGTCCATGGAACGGTCAGTCCTTTATTGGAATACCTGAAATGAATTCTGTTTATCTCTCTGGGTATAACCTTGCAATCCAAGATCAAACTTACACCCTCTCTCTTGCTTCCAATCTTGATACTCAACAAATTTTTTATTTGTTCATAAGCTCACAAGGGAACCTTGAGCAAAGTGATTGGGATCCTGAGAAGAAGCAATGGAATGTTAGTTGGCTTGCTGAAAAAACAGAGTGTGATTTCTATGGAACTTGTGGAGCGTTTGGGATTTGTAATGCAAAAGCATCCCCTGTTTGCAGTTGTTTAACAGGGTTTAAGCCAAAGCAGGAAAAGGAATGGAATCAAGGAAATTGGAGTAATGGGTGTGTGAGAAAGACGCCATTAAAATGTGAAAATCAGTTGAACAACAACACTGATGCTAAAGAAGATGGGTTTTTAAAATTGGGAATGATCAAAGTTCCATTTCTGGCAGAGTGGTCTACTTCCTCTGTTTCAATAGATGATTGCAAGCGCGAGTGCTTGGGAAATTGTTCCTGTAGTTCTTATGCATTTGAAAATGGCATTTGTATGCAATGGATAAATAACTTAATTGATATACAACAGTTTGAGAGCGCTGGAGCTGATCTTTACCTTCGAATCGCATTCCCAGATTTACCTACAACTACAAATAATGTAAGAGACAAGAAGGGAATTGTTATAGCCATAGCCATAGTGATACCCGCAACGATTGTCATCTTCATCATTGCCATATTCTTTCTCTGGAAATGGAAGACTAACAAACAAGAGAAGAAGATAACTATGACGTCTAGCCAAAAAGAAAGGATTTTGAAACAAACAAGGAAAGAGGATAACATGATTGAGGATGAAATCAAACTTGAGGAGCTACCACTTTATGAATTTGAGCAGCTAGCAATTGCAACAGATTACTTTGATTTGAGCAACAAGCTTGGGCAGGGTGGATTTGGTCCAGTGTATAAGGGAAAATTATTAAATGGACAGGAAATAGCAGTAAAGAGGCTTTCAAGAGCTTCTAAACAAGGGTATGAAGAATTTATAAATGAAGTGAGAGTGATTTCAAAGCTACAACACAGGAATCTTGTAAGACTTTTGGGTTGTTGCATTGAAGGAGAAGAGAAGATGTTAATTTATGAGTACATGCCCAACCTAAGTTTGGATGCATTCATCTTTGGCTCTCCCAAACAACAAATTTTCGACTGGAGAAAAAGATTCAATGTTATCAATGGAATTGCTCGAGGTCTTCTTTACCTTCATAGGGATTCAAGATTGAAAATTATTCATAGAGATCTTAAGGTAAGTAATATTTTGTTAGACAAAGATTTGAACCCTAAAATTTCGGATTTTGGCATGGCAAGAATCTTTGGTGGCGATGAAGTTGAAGCAAACACTTTAAGAGTTGTTGGAACTTATGGATATATGTCTCCTGAATATGCGATGCAAGGTCAATTTTCAGAGAAATCAGATGTGTTTAGTTTTGGAGTTTTGTTACTTGAAATTATTAGTGGGAGAAGAAATACAGGATTCTACCTCCATGAAAATTGCATAAGCTTACTGGGATTTGCATGGAAATTGTGGACGGAAGACAATCTTATTCCTTTGATTGAACCAACAATATATGAACCGTGCTACAAATCAAATATTTTGAGATGCATTCATGTGGGACTCTTGTGTGTTCAAGAATTTATTAATGAGAGACCAAATATTTCCACCATCATTTCAATGCTTAATAGTGAAATTGTCGATCTTCCTTCTCCAAAGCAACCTGGCTTTGTGGGCAGGCCACATGAAAGTAACACAGAATCTTCTCAACAATCTTCTCAACAAAATTTAGATCAATATTCTATAAATAATGTTACACTTACAACAGTTATAGCACGCTAA 2565 37.12 MRRSMRKLRHAISLLLLSLTCFSSRFCYGDDTITSTNFIKDPATIVSNGSVFKLGFFTPLNSTHRYVGIWFDKISPQTIAWVANRDSPLNDTSGIFTISKDGNLVVLDSNNTILWSSNVSFSSSSSSSSSATNNTIAQILDSGNLVLKDTTSGVIVWESFKHPSDKFLNSMKLMTNTRTNEHVDFISWSSPSDPSTGNFSFLLDVHNIPEVVVLNGGKTYWRSGPWNGQSFIGIPEMNSVYLSGYNLAIQDQTYTLSLASNLDTQQIFYLFISSQGNLEQSDWDPEKKQWNVSWLAEKTECDFYGTCGAFGICNAKASPVCSCLTGFKPKQEKEWNQGNWSNGCVRKTPLKCENQLNNNTDAKEDGFLKLGMIKVPFLAEWSTSSVSIDDCKRECLGNCSCSSYAFENGICMQWINNLIDIQQFESAGADLYLRIAFPDLPTTTNNVRDKKGIVIAIAIVIPATIVIFIIAIFFLWKWKTNKQEKKITMTSSQKERILKQTRKEDNMIEDEIKLEELPLYEFEQLAIATDYFDLSNKLGQGGFGPVYKGKLLNGQEIAVKRLSRASKQGYEEFINEVRVISKLQHRNLVRLLGCCIEGEEKMLIYEYMPNLSLDAFIFGSPKQQIFDWRKRFNVINGIARGLLYLHRDSRLKIIHRDLKVSNILLDKDLNPKISDFGMARIFGGDEVEANTLRVVGTYGYMSPEYAMQGQFSEKSDVFSFGVLLLEIISGRRNTGFYLHENCISLLGFAWKLWTEDNLIPLIEPTIYEPCYKSNILRCIHVGLLCVQEFINERPNISTIISMLNSEIVDLPSPKQPGFVGRPHESNTESSQQSSQQNLDQYSINNVTLTTVIAR 854
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5840411 5843607 + CmPI595203_03g011400.1 Cmu03g1140 411926
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu03g1140 854 SMART serkin_6 532 790 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu03g1140 854 FunFam receptor-like serine/threonine-protein kinase SD1-8 503 607 - -
Cmu03g1140 854 Pfam Domain of unknown function (DUF3403) 805 854 IPR021820 GO:0004674(InterPro)
Cmu03g1140 854 MobiDBLite consensus disorder prediction 822 837 - -
Cmu03g1140 854 PIRSF SRK 3 854 IPR024171 GO:0004674(InterPro)
Cmu03g1140 854 ProSiteProfiles Protein kinase domain profile. 532 790 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu03g1140 854 Pfam Protein tyrosine and serine/threonine kinase 534 802 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu03g1140 854 MobiDBLite consensus disorder prediction 818 837 - -
Cmu03g1140 854 CDD B_lectin 36 163 IPR001480 -
Cmu03g1140 854 Gene3D - 27 161 IPR036426 -
Cmu03g1140 854 ProSiteProfiles Bulb-type lectin domain profile. 30 160 IPR001480 -
Cmu03g1140 854 Pfam S-locus glycoprotein domain 221 330 IPR000858 GO:0048544(InterPro)
Cmu03g1140 854 SMART blect_4 36 163 IPR001480 -
Cmu03g1140 854 SUPERFAMILY Protein kinase-like (PK-like) 513 803 IPR011009 -
Cmu03g1140 854 SMART ntp_6 362 435 IPR003609 -
Cmu03g1140 854 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 608 811 - -
Cmu03g1140 854 CDD STKc_IRAK 538 804 - -
Cmu03g1140 854 ProSitePatterns Serine/Threonine protein kinases active-site signature. 653 665 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu03g1140 854 SUPERFAMILY alpha-D-mannose-specific plant lectins 78 228 IPR036426 -
Cmu03g1140 854 CDD PAN_AP_plant 348 436 - -
Cmu03g1140 854 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 26 160 - -
Cmu03g1140 854 Gene3D Phosphorylase Kinase; domain 1 489 607 - -
Cmu03g1140 854 Gene3D Transferase(Phosphotransferase) domain 1 608 810 - -
Cmu03g1140 854 Pfam PAN-like domain 363 421 IPR003609 -
Cmu03g1140 854 ProSiteProfiles PAN/Apple domain profile. 352 436 IPR003609 -
Cmu03g1140 854 Pfam D-mannose binding lectin 78 188 IPR001480 -
Cmu03g1140 854 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 21 817 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g0150 Cmu-Chr2:1534471 Cmu03g1140 Cmu-Chr3:5840411 1.40E-165 dispersed
Cmu03g1138 Cmu-Chr3:5815515 Cmu03g1140 Cmu-Chr3:5840411 3.10E-280 dispersed
Cmu03g1140 Cmu-Chr3:5840411 Cmu10g1427 Cmu-Chr10:8419970 1.20E-178 dispersed
Cmu03g1139 Cmu-Chr3:5822783 Cmu03g1140 Cmu-Chr3:5840411 0.00E+00 tandem
Cmu03g1140 Cmu-Chr3:5840411 Cmu03g1141 Cmu-Chr3:5852562 1.80E-296 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75389 PF07714 PK_Tyr_Ser-Thr 1.00E-46 CL0016 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu03g1140 - - - 0.0