Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu03g1152 ATGCCAACGCACGCTTTCTTTAGCAGAGTTTCCAGACTCTTCCACGACCATCCTTCCCTTTCCAGGCTCCTTGTTCTTGTCACCGTTAGTGGGGGGAGCCTTGTAGCATACGCTGATGCTAGCCCAACCAATGGTGTACCCAGTATTGCATCTAAAGCCAATATGGAGGAGAAGAAGAAGAAGGTGGTAGTGCTTGGAACTGGTTGGGCGGGAACAAGTTTCTTGAAGAATATTAAAGATCCCTCCTATGAGGTTCAAGTGATATCACCTCGTAATTATTTTGCGTTCACCCCATTGTTGCCAAGTGTTACATGTGGTACAGTGGAAGCCCGTAGCATTGTTGAACCGATTCGCAACATCGTGAGGAAGAAAAGGGTAGACATTAGATTCAATGAAGCAGAGTGCTACAAGATTGATGCTGAAAATAGAAAACTCTATTGCCGATCTAATGAAAACAACAATCTGAATGGGAAAAAGGAATTTGTTGTGGACTATGACTACCTAGTGATAGCTGTGGGAGCTCAAGTTAACACATTCAATACCCCTGGCGTTGTGGAGAATTGCCATTTCTTGAAGGAAGTGGAAGATGCTCAGAGAATACGAAGAACTGTAATTGATTGCTTTGAGAGGGCAAGCCTGCCTACCTTGGATGAAGAAGATAGAAAGAAAATTCTTCATTTTGCTGTTGTTGGTGGTGGCCCCACTGGTGTGGAATTTGCGGCAGAACTTCACGATTTTGTTAATGAGGACTTGGTCAAATTATATCCTGGACTGCAAGATTTTGTAAAAATTACTCTTCTTGAGGCAGGAGATCATATCTTGAACATGTTTGACAAAAGAATTACTACTTTTGCTGAAGAAAAATTCCGTAGAGATGGTATTGATGTTAAGACAGGATCAATGGTAATCAAGGTAACTGATAAAGAGATTTCTACCAAGGAAATGAAGAATGGAGAAATATCTTCTATGCCTTATGGAATGACTGTATGGTCAACTGGTATAGGAACCCGTCCGATCATAAAGGACTTTATGACACAGATTGGTCAGGCTAACAGGCGTGCTTTGGCAACCGATGAATGGCTTCGAGTTGAGGGATGTGACAATATATATGCACTTGGTGACTGTGCTACTATAAATCAGCGAAGAGTCATGGAGGATATTTCAGCAATTTTTAGCAAGGCAGACAAAGACAATTCTGGGACACTTACAGTTAAAGAATTTCAAGAAGTCATTGATGACATATGTGAAAGATATCCCCAGGTGGAGCTATATTTGAAGAATAAGCAGATGCACAACATTGTTGATCTTTTAAAAGGATCCAAAGAGGATGTGGCGAAGGAGTCTATCGAATTAGACATTGAAGAGTTTAAATCAGCTCTTTCCCAAGTTGATTCTCAAATGAAAAACCTTCCTGCTACAGCACAGGTGGCTGCGCAGCAAGGTGCATATCTTGCCCATTGTTTTAATCGTATGGACGAGTGCGAAAAAGATCCTGAAGGTCCTCTTAGGTTTAGGGGATCAGGGCGCCACCGCTTTCGGCCCTTTAGGTACAAACATCTTGGACAATTTGCACCTTTGGGAGGAGAACAAACGGCTGCACAACTTCCTGGGGATTGGGTGTCCATTGGCCACAGCTCTCAGTGGCTCTGGTACTCTGTCTATGCAAGTAAGCAAGTTAGTTGGCGCACAAGAGCACTGGTGATTACGGATTGGACGAGGCGTTTTGTTTTCGGGAGAGATTCGAGCCGCATATGA 1755 43.02 MPTHAFFSRVSRLFHDHPSLSRLLVLVTVSGGSLVAYADASPTNGVPSIASKANMEEKKKKVVVLGTGWAGTSFLKNIKDPSYEVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPIRNIVRKKRVDIRFNEAECYKIDAENRKLYCRSNENNNLNGKKEFVVDYDYLVIAVGAQVNTFNTPGVVENCHFLKEVEDAQRIRRTVIDCFERASLPTLDEEDRKKILHFAVVGGGPTGVEFAAELHDFVNEDLVKLYPGLQDFVKITLLEAGDHILNMFDKRITTFAEEKFRRDGIDVKTGSMVIKVTDKEISTKEMKNGEISSMPYGMTVWSTGIGTRPIIKDFMTQIGQANRRALATDEWLRVEGCDNIYALGDCATINQRRVMEDISAIFSKADKDNSGTLTVKEFQEVIDDICERYPQVELYLKNKQMHNIVDLLKGSKEDVAKESIELDIEEFKSALSQVDSQMKNLPATAQVAAQQGAYLAHCFNRMDECEKDPEGPLRFRGSGRHRFRPFRYKHLGQFAPLGGEQTAAQLPGDWVSIGHSSQWLWYSVYASKQVSWRTRALVITDWTRRFVFGRDSSRI 584
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5947518 5952583 - CmPI595203_03g011520.1 Cmu03g1152 411938
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu03g1152 584 FunFam External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial 50 411 - -
Cmu03g1152 584 Pfam NDH2 C-terminal domain 519 580 IPR054585 -
Cmu03g1152 584 PANTHER NADH DEHYDROGENASE 54 584 IPR045024 GO:0003954(InterPro)|GO:0006116(InterPro)
Cmu03g1152 584 SUPERFAMILY FAD/NAD(P)-binding domain 217 379 IPR036188 -
Cmu03g1152 584 ProSiteProfiles EF-hand calcium-binding domain profile. 382 417 IPR002048 GO:0005509(InterPro)
Cmu03g1152 584 SUPERFAMILY FAD/NAD(P)-binding domain 59 278 IPR036188 -
Cmu03g1152 584 Gene3D - 426 583 - -
Cmu03g1152 584 Gene3D - 49 414 - -
Cmu03g1152 584 FunFam External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial 428 583 - -
Cmu03g1152 584 Pfam Pyridine nucleotide-disulphide oxidoreductase 60 383 IPR023753 GO:0016491(InterPro)
Cmu03g1152 584 SUPERFAMILY EF-hand 375 470 IPR011992 -
Cmu03g1152 584 ProSitePatterns EF-hand calcium-binding domain. 395 407 IPR018247 -
Cmu03g1152 584 SMART efh_1 386 414 IPR002048 GO:0005509(InterPro)
Cmu03g1152 584 PRINTS FAD-dependent pyridine nucleotide reductase signature 226 244 - -
Cmu03g1152 584 PRINTS FAD-dependent pyridine nucleotide reductase signature 62 81 - -
Cmu03g1152 584 PRINTS FAD-dependent pyridine nucleotide reductase signature 165 183 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g1717 Cmu-Chr2:31069105 Cmu03g1152 Cmu-Chr3:5947518 3.40E-262 dispersed
Cmu02g1946 Cmu-Chr2:33320089 Cmu03g1152 Cmu-Chr3:5947518 1.80E-70 dispersed
Cmu03g1152 Cmu-Chr3:5947518 Cmu05g2248 Cmu-Chr5:31910721 9.60E-07 dispersed
Cmu01g2211 Cmu-Chr1:34541070 Cmu03g1152 Cmu-Chr3:5947518 2.70E-68 wgd
Cmu02g0132 Cmu-Chr2:1403542 Cmu03g1152 Cmu-Chr3:5947518 3.60E-220 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu03g1152 K03885 - csv:101204145 1137.09