Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu03g1194 ATGTTGATGAAAAAGAGAGGGGAAAGTGGGGCTTTGGCCAACCGAGTCGGTGAGAACACGCAAAGAGCTACCAGACGACCTGGCGATGGATTTTTACTTACTGGTCGAATGGGTATTGATTTTCGTTCTGCAGGAGAAGTTTACAGAATTACGGCCCCAAGTATGAGTTGCATCTGCTTCGGTTCCTCTACTGTGGAGAAGAAACGAATCTCTACACGTGCTGATAAGGAATTGGACATTGACTTGCTTGAGAATGTAAAACAAATCTCCTTCAATGAATTAAGATCTGCTTCGAACGATTTCCATTCAAACAATAGAATTGGACGGGGAGGTTTTGGAACTGTTTACAAGGGCACATTAAGGAATGGAGTACAAGTTGCAATAAAGAAGCTCTCCATAGAGTCTAAGCAAGGTGCTCACGAATTTTTGACAGAGATCAAAACCATTTCAAATGTTAGGCATCGAAACCTTGTCGAGTTGATTGGATGCTGTTCTCAAAAAGCTAACCGGATCTTGGTATATGAATATCTGGAGAATAATAGTCTCGACCATGCTTTGTTAGATCCTAAGAAAACAAGCGTGAACCTAGATTGGGGGAAGAGGTCCTCTATTTGCATTGGTACTGCGAGGGGTCTTCAATTTCTTCACGAGGAAGCTGTTCCACGTATTGTGCATAGAGACATCAAGGCTAGTAATATACTCCTTGATGGGGACTTCAATCCGAAAATTGGTGACTTTGGATTAGCCAAACTTTTCCCAGATGATATCACTCACATTAGCACAAGAATTGCAGGAACAACCGGTTATTTGGCTCCAGAGTATGCATTGGGAGGTCAGCTAACTCCAAAGGCTGATGTGTATAGCTTTGGAGTCCTCATCCTTGAAATAGTTAGTGGTAGACGTAGCAGTACAGTTTTTGGGAGAGAAATATCAATACTCTTGCTGGAAAGGGTGTGGGAGCTATATGAAGAAGGAAAACTCTTAGAAATAGTTGATCCTAGACTAGAAGATTATCCTCAGGAAGAAGTGCTTAGGTACATGAAAGTGGCTCTTTTTTGCACACAAGCGGCTGCAAATCGGCGGCCAGCAATGAGCCAAGTCGTTGACATGCTTACAAAGAATATCAAGCTTAACGAGAAGCTACTTACCGCCCCGGGGTTCTATGGAGGCCTGGGGCTTAGTGACATTCCTTCAGTGAGCAAGAAGACCTCGAACACTTCCACTAGCAACGAGATGAGCTCCGCCGTCATCTCCATAACTCAAATCACCCCCAGATGA 1278 43.66 MLMKKRGESGALANRVGENTQRATRRPGDGFLLTGRMGIDFRSAGEVYRITAPSMSCICFGSSTVEKKRISTRADKELDIDLLENVKQISFNELRSASNDFHSNNRIGRGGFGTVYKGTLRNGVQVAIKKLSIESKQGAHEFLTEIKTISNVRHRNLVELIGCCSQKANRILVYEYLENNSLDHALLDPKKTSVNLDWGKRSSICIGTARGLQFLHEEAVPRIVHRDIKASNILLDGDFNPKIGDFGLAKLFPDDITHISTRIAGTTGYLAPEYALGGQLTPKADVYSFGVLILEIVSGRRSSTVFGREISILLLERVWELYEEGKLLEIVDPRLEDYPQEEVLRYMKVALFCTQAAANRRPAMSQVVDMLTKNIKLNEKLLTAPGFYGGLGLSDIPSVSKKTSNTSTSNEMSSAVISITQITPR 425
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6371222 6382171 - CmPI595203_03g011940.1 Cmu03g1194 411980
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu03g1194 425 FunFam Putative LRR receptor-like serine/threonine-protein kinase 177 383 - -
Cmu03g1194 425 MobiDBLite consensus disorder prediction 1 29 - -
Cmu03g1194 425 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 68 410 IPR052059 GO:0004674(PANTHER)|GO:0006468(PANTHER)
Cmu03g1194 425 Gene3D Phosphorylase Kinase; domain 1 68 176 - -
Cmu03g1194 425 ProSitePatterns Protein kinases ATP-binding region signature. 107 130 IPR017441 GO:0005524(InterPro)
Cmu03g1194 425 ProSitePatterns Serine/Threonine protein kinases active-site signature. 223 235 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu03g1194 425 CDD STKc_IRAK 107 373 - -
Cmu03g1194 425 MobiDBLite consensus disorder prediction 399 425 - -
Cmu03g1194 425 FunFam cold-responsive protein kinase 1 72 176 - -
Cmu03g1194 425 Gene3D Transferase(Phosphotransferase) domain 1 177 383 - -
Cmu03g1194 425 SUPERFAMILY Protein kinase-like (PK-like) 83 371 IPR011009 -
Cmu03g1194 425 ProSiteProfiles Protein kinase domain profile. 101 377 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu03g1194 425 SMART serkin_6 101 387 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu03g1194 425 Pfam Protein tyrosine and serine/threonine kinase 103 371 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu03g1194 Cmu-Chr3:6371222 Cmu10g2905 Cmu-Chr10:35423622 1.00E-114 dispersed
Cmu03g1194 Cmu-Chr3:6371222 Cmu07g1022 Cmu-Chr7:24961755 1.50E-89 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75391 PF00069 Pkinase 1.10E-45 CL0016 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu03g1194 - - - 0.0