Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cmu03g1216 | ATGTTTGAGGTCAAATTTCTACAACTTTGTTCCACGTTTCCAAATTTCATCGCTTTCAGCAGCCGTTTTTCAATCAGTCTCCACCGTCGGTCTCTCCTCTCCGCCTTTCCATTCTCCGTGGTCGGTATCTTAGTCGCTCTCTCTCTCACAACCAGTCTCCACGTTTCCGTCGTCGAAGGTCTTTCGTGGAGCTTCTGTTCGCAAGTCATTCAGCGTTGCATGCTGTCCTTGGAGAATGCTTTAAAACGAGCTGAAGAGCTGATAAATGTTGGCCAGAAGCAAGATGCCTTGCAAGCCCTTCATGATCTTATCACTTCAAAGAAATATCGAGCATGGCAGAAGCCTCTTGAGAAGATTATGTTCAAGTATGTTGAACTGTGTGTGGATATGAGGAAAGGAAGGTTTGCTAAGGATGGTTTAATTCAATACCGTATTGTTTGCCAGCAAGTCAATGTTACTTCTTTAGAGGAAGTAATCAAGCACTTTATGCATCTTTCCACTGAGAAGGCAGAGCAGGCTCGTAGTCAAGCTCAAGCCTTAGAAGAAGCTCTGGACGTTGATGATTTAGAAGCTGATAAAAGACCAGAAGATCTGATGCTTAGTTATGTCAGTGGTGAAAAGGGAAAGGATAGATCTGATCGTGAACTTGTTACCCCTTGGTTTAAATTTCTGTGGGAGACATATCGAACAGTTCTTGAGATACTAAGGAATAACTCAAAGTTGGAGGCACTTTATGCGATGACAGCCCATCGTGCCTTCCAGTTCTGTAAGGTGTACAAAAGAACAACAGAATTTCGCAGATTATGTGAAATTATCAGAAATCATCTTGCTAATCTCAACAAGTATAGAGACCAAAGGGATCGGCCTGATCTTTCTGCTCCAGAGAGCTTGCAATTATACCTCGACACTAGATTTGAACAGCTGAAGGTTGCCACAGAGCTTGAGCTTTGGCAGGAAGCTTTTCGTTCTGTGGAAGATATCCATGGTTTGATGTGCATGGTGAAGAAGACACCTAAACCATCCTTGATGGTGGTGTATTACGTCAAATTAACAGAGATCTTCTGGATATCGGACAGCAATCTTTATCATGCCTATGCATGGCTTAAACTTTTCTCCATTCAGAAAAGTTTCAACAAAAATCTAAGCCAGAAGGATTTGCAGCTGATAGCTTCGTCTGTTCTTTTAGCAACTCTTGCAGTGTCCCCCTATGACTCTAAGCATGGTGCTTCCCATTTAGAACTTGAACATGAGAAAGAGCGAAATTTGAGGATGGCTAATCTTATAGGGTTCAATTTAGATTCCAAACTTGAAAGTAGAGATGTGCTTTCGAGGGCGAATCTTCTTTCTGAACTGGTGTCTAAAGGAGTCCTGAGCTGCGCAATTCAGGAAGTTAAAGATCTCTATCATCTTTTGGAGCATGAATTTTTCCCTCTTGACCTTGCAACAAAATTGCAACCATTACTTAACAAAATATCAAAGCTTGGAGGTAAGCTTTCATCAGCTTCATCTGTCCCTGAAGTGCAGTTGTCTCAATATGTTCCAGCTCTTGAAAAACTTGCTACCCTGAGGCTGCTTCAGCAGGTCTCCAAGGTGTATCAGACAATGAAAATTGAGAGTCTATCGCAGATGATCCCATTTTTTGATTTTTCTGCCGTGGAGAAGATATTAGTTGATGCAGTTAAACAGAATTTCATTGCCATGAAAGTTGATCACTCAAAGAATATTGTGTTATTTGGCAATTTGGGTATCGAATCAGATGGGCTTCGAGACCACCTGACCACTCTTGCAGAATCCTTAAACAAAGCAAGAGATATGATCTATCCTCCAGTTAGGAAAGCCTCGAAAACAGGTGATATGTTGCCTGATTTGGCAGATATTGTTGATAAAGAGCACAAGAGGTTGCTTGCTCGGAAATCAATAATTGAGAAAAGGAAGGAAGAGCAGGAACGACAACTTTTGGAAATGGAACGTGAGGAGGAATCAAGAAGGTTAAAATTACTGAAGATAACTGAAGAAGCTGAGCAGAAGCGGCTTGCTGCAGAATATGAACAAAGGAAAAACCAACGGCTTCGTAGGGAAATAGAAGAGCGAGAACTTGAAGAAGCACAGGCTTTACTTCAGGAAGCTGAAAAACGTGTTGGTAAAAAGAAGGGAAGCAGGAAACCGGTTCTTGACTCTGAAAAGTTGTCGAAACAAACTTTAATGCAGTTGGCCCTTACTGAACAATTAAGGGAGAGACAAGAAATGGAGAAGAAATTACAAAAGCTAGCCAAAACTATGGATTATCTAGAAAGAGCAAAAAGAGAAGAGGCTGCAACGTTAATTGAAGCTGCATTTCAGCAACGTTTGCTTGAAGAGAGAATGATCCATGAACGTAATCAGCAGCTGGAGGTTGAGTTAAGCAAGCAGCGCCATGAAGGTGACCTCAAGGAGAAGAATCGATTGGCGAGAATGTTGGAGAGTAAGAAAATTTTCCAAGAAAGAGTAATTAGTCTTCGCCAAGAGGAATTCAGCAGACGTAGAGCTGACAGAGAAGAACATATCAGGCAAATAATTCAGGCCCGGAAAGCGGAAAGGGAGGCTAAGAGGAAGAAAATATTTTATGTAAGGCGTGAAGAGGAGAGGATTAGAATATTACGTGAAGAGGAGGAAGCACGCAAGCGTGAAGAGGCCGAGAGGAGAAAGAAGGAAGAAGCTGAACGCAAGGCTAAATTGGATGAGATTGCTGAGAAGCAGAGACAGAGGGAGCGAGAATTGGAAGAAAAAGAAAGGCTGAGGAAAGAAAGTCTCTTTGGTGGTGGCAGATCATCTGATGCACCTGCTAGACCTGACTTTCCTCCTGCTTCTCGCCTTCTGGATTCTGGGACTGCTGCTCCTGCCGCTGCTGCTGCAGCTGCAGCTGCCGCACCATCTCCAGCAAAATACGTCCCAAGGTTTCGACGGTCTGAAGGCTCCACTGCTACTGCACCACCACCTGAATCTGATCGATGGGGAAGCAGCCGGCCTGATAATCGGCCATCTCAACCAGATAGCTGGCGCAGTGATGACCGTAGACCTGCATTTGGAAGTTCAAGGTCATTGTGGTCCTCATCCCGAGTTCCTACTCGTACCAGCACGGACCACTGA | 3126 | 43.51 | MFEVKFLQLCSTFPNFIAFSSRFSISLHRRSLLSAFPFSVVGILVALSLTTSLHVSVVEGLSWSFCSQVIQRCMLSLENALKRAEELINVGQKQDALQALHDLITSKKYRAWQKPLEKIMFKYVELCVDMRKGRFAKDGLIQYRIVCQQVNVTSLEEVIKHFMHLSTEKAEQARSQAQALEEALDVDDLEADKRPEDLMLSYVSGEKGKDRSDRELVTPWFKFLWETYRTVLEILRNNSKLEALYAMTAHRAFQFCKVYKRTTEFRRLCEIIRNHLANLNKYRDQRDRPDLSAPESLQLYLDTRFEQLKVATELELWQEAFRSVEDIHGLMCMVKKTPKPSLMVVYYVKLTEIFWISDSNLYHAYAWLKLFSIQKSFNKNLSQKDLQLIASSVLLATLAVSPYDSKHGASHLELEHEKERNLRMANLIGFNLDSKLESRDVLSRANLLSELVSKGVLSCAIQEVKDLYHLLEHEFFPLDLATKLQPLLNKISKLGGKLSSASSVPEVQLSQYVPALEKLATLRLLQQVSKVYQTMKIESLSQMIPFFDFSAVEKILVDAVKQNFIAMKVDHSKNIVLFGNLGIESDGLRDHLTTLAESLNKARDMIYPPVRKASKTGDMLPDLADIVDKEHKRLLARKSIIEKRKEEQERQLLEMEREEESRRLKLLKITEEAEQKRLAAEYEQRKNQRLRREIEERELEEAQALLQEAEKRVGKKKGSRKPVLDSEKLSKQTLMQLALTEQLRERQEMEKKLQKLAKTMDYLERAKREEAATLIEAAFQQRLLEERMIHERNQQLEVELSKQRHEGDLKEKNRLARMLESKKIFQERVISLRQEEFSRRRADREEHIRQIIQARKAEREAKRKKIFYVRREEERIRILREEEEARKREEAERRKKEEAERKAKLDEIAEKQRQRERELEEKERLRKESLFGGGRSSDAPARPDFPPASRLLDSGTAAPAAAAAAAAAAPSPAKYVPRFRRSEGSTATAPPPESDRWGSSRPDNRPSQPDSWRSDDRRPAFGSSRSLWSSSRVPTRTSTDH | 1041 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 6649852 | 6659197 | + | CmPI595203_03g012160.1 | Cmu03g1216 | 412002 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cmu03g1216 | 1041 | Coils | Coil | 74 | 94 | - | - | |
| Cmu03g1216 | 1041 | Coils | Coil | 802 | 822 | - | - | |
| Cmu03g1216 | 1041 | Pfam | eIF3a, PCI domain, TPR-like region | 78 | 477 | IPR054711 | - | |
| Cmu03g1216 | 1041 | Coils | Coil | 631 | 670 | - | - | |
| Cmu03g1216 | 1041 | Coils | Coil | 869 | 928 | - | - | |
| Cmu03g1216 | 1041 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 3, THETA SUBUNIT | 78 | 1016 | IPR027512 | GO:0001732(PANTHER)|GO:0002188(PANTHER)|GO:0003729(PANTHER)|GO:0003743(PANTHER)|GO:0005852(InterPro)|GO:0043614(PANTHER)|GO:0071540(PANTHER)|GO:0071541(PANTHER) | |
| Cmu03g1216 | 1041 | Coils | Coil | 673 | 719 | - | - | |
| Cmu03g1216 | 1041 | FunFam | Eukaryotic translation initiation factor 3 subunit A | 422 | 564 | - | - | |
| Cmu03g1216 | 1041 | MobiDBLite | consensus disorder prediction | 1023 | 1041 | - | - | |
| Cmu03g1216 | 1041 | Coils | Coil | 739 | 769 | - | - | |
| Cmu03g1216 | 1041 | Pfam | PCI domain | 508 | 578 | IPR000717 | - | |
| Cmu03g1216 | 1041 | Coils | Coil | 844 | 864 | - | - | |
| Cmu03g1216 | 1041 | Gene3D | UVR domain | 287 | 338 | - | - | |
| Cmu03g1216 | 1041 | FunFam | Eukaryotic translation initiation factor 3 subunit A | 287 | 338 | - | - | |
| Cmu03g1216 | 1041 | ProSiteProfiles | PCI domain profile. | 386 | 583 | IPR000717 | - | |
| Cmu03g1216 | 1041 | Hamap | Eukaryotic translation initiation factor 3 subunit A [EIF3A]. | 73 | 1016 | IPR027512 | GO:0005852(InterPro) | |
| Cmu03g1216 | 1041 | MobiDBLite | consensus disorder prediction | 884 | 931 | - | - | |
| Cmu03g1216 | 1041 | Coils | Coil | 163 | 190 | - | - | |
| Cmu03g1216 | 1041 | FunFam | Eukaryotic translation initiation factor 3 subunit A | 338 | 412 | - | - | |
| Cmu03g1216 | 1041 | Gene3D | - | 339 | 413 | - | - | |
| Cmu03g1216 | 1041 | Gene3D | - | 433 | 564 | - | - | |
| Cmu03g1216 | 1041 | MobiDBLite | consensus disorder prediction | 884 | 1041 | - | - | |
| Cmu03g1216 | 1041 | SMART | motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 | 511 | 602 | IPR000717 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cmu03g1216 | Cmu-Chr3:6649852 | Cmu03g2341 | Cmu-Chr3:32038145 | 0.00E+00 | dispersed | |
| Cmu03g1216 | Cmu-Chr3:6649852 | Cmu03g1219 | Cmu-Chr3:6681999 | 0.00E+00 | proximal |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cmu03g1216 | K03254 | - | csv:101215735 | 1558.12 |