Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu03g1226 ATGAGCAATTTTCCAGCGGATTTCAGGAGGCATGAATCAGCTAAAAGTAGATTAAAAGATTTATTGCTTCAGAAAGATAATCAACTTTGTGCAGATTGTGGTGCCCCAGATCCTAAATGGGCCTCTGCGAATATTGGTGTGTTTATATGCTTAAAATGTAGTGGCGTGCACAGAAGCCTTGGAACACATATATCAAAGGTCTTGTCGATAACATTGGATGAATGGTCTGATGATGAGATTGATGCAATGATAGAGGTTGGAGGAAATGGTTCTGCTAATGCAATATATGAGGCTTTTATCCCTGTTGGATATACAAAGCCTGGACCAAGTGCCAGCCATGAGGAGCGTTCAAAGTTCATTTGGTCTAAGTATGAACTTCAAGAATTTTTAAAACCGAGCTTGAGAATTATATCCAATAACTCAAAGAATTCTGAGGAGCCAAGCTTGTTTCAAGAGATCTCTGATAGCTTTCGAAGCTCAAATTCTTCAAAGAAATCACCACAAGAAGGCATGGTTGAATTTATGGGATTACTGAAAGTGAAGGTGATTAAAGGCACAAACTTAGCCGTGAGAGATGTGAAGTCGAGTGATCCTTTCATTACCTTGACTCTTGGGCAACAGACTGCTAAAACAACGGTGATAAAGAGCGACTTGAATCCAGTTTGGAACGAGGAACTCATGCTTTCGGTTCCTCAGGAATATGGACCCTTGAAGTTGCAAGTGTTTGATCACGACGTAATTTCAGCTAATGACTTGATGGGTGAAGCAGAAATCGACCTTCAGCCGATGATAACATCTGCACTGGCATTTGGAGATGCTGAAATGTTTGAGAATATGCAGATAGGGAAATGGTTGAAGTCAGATGACAATGCCCTCATCGATGACAGTGCTGTCGTCATCGTCGACGGAAAGGTGAAACAAGAGGTGTCACTCAAGCTCCAAAATGTAGAATCAGGTGAAGTGTACTTGGAACTAGAGTGGATGCCTCTTGATCAATAA 999 41.24 MSNFPADFRRHESAKSRLKDLLLQKDNQLCADCGAPDPKWASANIGVFICLKCSGVHRSLGTHISKVLSITLDEWSDDEIDAMIEVGGNGSANAIYEAFIPVGYTKPGPSASHEERSKFIWSKYELQEFLKPSLRIISNNSKNSEEPSLFQEISDSFRSSNSSKKSPQEGMVEFMGLLKVKVIKGTNLAVRDVKSSDPFITLTLGQQTAKTTVIKSDLNPVWNEELMLSVPQEYGPLKLQVFDHDVISANDLMGEAEIDLQPMITSALAFGDAEMFENMQIGKWLKSDDNALIDDSAVVIVDGKVKQEVSLKLQNVESGEVYLELEWMPLDQ 332
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6860850 6863840 - CmPI595203_03g012260.1 Cmu03g1226 412012
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu03g1226 332 Gene3D C2 domain 173 332 IPR035892 -
Cmu03g1226 332 Pfam Putative GTPase activating protein for Arf 16 131 IPR001164 GO:0005096(InterPro)
Cmu03g1226 332 CDD C2_ArfGAP 176 319 - -
Cmu03g1226 332 SUPERFAMILY ArfGap/RecO-like zinc finger 15 132 IPR037278 -
Cmu03g1226 332 ProSiteProfiles C2 domain profile. 159 275 IPR000008 -
Cmu03g1226 332 CDD ArfGap 18 124 - -
Cmu03g1226 332 Gene3D Arf GTPase activating protein 4 135 IPR038508 -
Cmu03g1226 332 FunFam ADP-ribosylation factor GTPase-activating protein AGD12 174 332 - -
Cmu03g1226 332 Pfam C2 domain 176 263 IPR000008 -
Cmu03g1226 332 MobiDBLite consensus disorder prediction 148 168 - -
Cmu03g1226 332 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 10 332 IPR044518 GO:0005096(InterPro)|GO:0005543(InterPro)
Cmu03g1226 332 FunFam Arf-GAP with dual PH domain-containing protein 1 10 138 - -
Cmu03g1226 332 SMART C2_3c 177 272 IPR000008 -
Cmu03g1226 332 SMART arf_gap_3 15 137 IPR001164 GO:0005096(InterPro)
Cmu03g1226 332 ProSiteProfiles ARF GTPase-activating proteins domain profile. 15 146 IPR001164 GO:0005096(InterPro)
Cmu03g1226 332 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 176 327 IPR035892 -
Cmu03g1226 332 PRINTS HIV Rev interacting protein signature 27 46 IPR001164 GO:0005096(InterPro)
Cmu03g1226 332 PRINTS HIV Rev interacting protein signature 67 88 IPR001164 GO:0005096(InterPro)
Cmu03g1226 332 PRINTS HIV Rev interacting protein signature 46 63 IPR001164 GO:0005096(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu03g1226 Cmu-Chr3:6860850 Cmu05g2722 Cmu-Chr5:35680536 9.80E-89 dispersed
Cmu07g0705 Cmu-Chr7:13856569 Cmu03g1226 Cmu-Chr3:6860850 1.30E-18 transposed
Cmu07g1169 Cmu-Chr7:26965409 Cmu03g1226 Cmu-Chr3:6860850 4.20E-17 transposed
Cmu01g2459 Cmu-Chr1:36550089 Cmu03g1226 Cmu-Chr3:6860850 1.50E-137 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu03g1226 K12486 - csv:101211569 586.645