Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu03g1227 ATGGCTCTTGTCGTGCATAGAGATTCCTTGAATAAGCAGATGGATACAAGCAAGTATGTGAGATATACGCCTGAACAAGTCGATGCATTAGAAAGGGTTTATGCAGAATGCCCAAAACCCAGTTCGTTGAGGAGGCAACAGCTCATTCGGGAGTGTCCTATTCTCTCTAATATTGAGCCGAAGCAGATCAAAGTTTGGTTCCAAAATCGCAGATGTCGTGAAAAGCAAAGGAAGGAAGCTTCTCGTCTTCAAACAGTTAATAGGAAGCTAACTGCGATGAACAAGCTGTTGATGGAAGAGAATGACCGTCTGCAGACGCAAGTCTCTCGTTTGGTTTACGAGAACGGATACATGAGACAGCAACTGCATACTGCATCTGGAACAACCACAGACAATAGCTGTGAGTCTGTGGTCATGAGTGGTCAACAGCATCAACAGCAAAACCCAACTAAGCATACTCAAAAAGATGCTAATAACCCAGCTGGTCTTCTTGCGATTGCCGAGGAGACCTTGGCAGAGTTCCTATCCAAGGCAACAGGAACTGCCGTCGACTGGGTACAAATGATTGGGATGAAGCCTGGTCCGGATTCAATTGGGATTGTTGCTGTTTCCCGCAATTGCAATGGGGTAGCAGCACGAGCCTGTGGTTTAGTTAGTCTTGAGCCCATGAAGGTGGCTGAAATTCTCAAAGATCGTCTGTCATGGTTTCGTGACTGCCGTTGTGTTGATGTACTAAGTGCAATCTCTACAGGAAATGGGGGGACCATAGAACTCTTATATATGCAGACATATGCACCTACAACTTTAGCCGCAGCACGTGACTTTTGGACTCTTCGATACACCACAAGCTTGGAAGATGGCAGCCTTGTGATATGTGAGAGATCGTTAAGGTCGTCTACTGGTGGCCCATCAGGGCCCCCTCCATCCAGTTTCGTAAGAGCTGAAATGCTTCCAAGCGGGTATCTTATTCGAGCTTGTGAGGGTGGTTCCCTTATTCACATTGTTGATCATGTTGATTTAGATGTTTGGAGTGTTCCTGAAGTTCTAAGGCCACTTTATGAATCAACAAAGATTCTAGCTCAGAGAATGACTGTTGCTGCCTTGCGCTATGTTCGACAAATTGCTCAAGAGGCAAGTGGAGAAATTCAATTGGGTGGAGGCCGCCAACCGGCTGTTTTAAGGACTTTCAGTCAAAGACTTTGTAGGGGTTTTAATGATGCAGTAAATGGATTTGTGGATGATGGTTGGTCGCTTATGGATAGCGATGGAATAGAGGATGTGACAGTTGTTATTAATTCATCTCCAAACAAATTCCTCTGTTCGCAATATAACACTTCATTGTATCCTACTTTTGGAGGTGTATTGTGTGCCAAGGCGTCAATGTTACTGCAGAATGTCCCCCCTGCTTTGCTTGTTCGTTTCCTACGGGAGCATCGTTCAGAATGGGCTGATTATGGGGTCGATGCGTACTCTGCCGCATGTCTTAAAGCCAGTGCATATGCTGTTCCGTGTGCGAGATCCGGTGGCTTCCCTAGTGGTCAGGTCATTTTACCACTTGCACATACGGTCGAGAATGAGGAGTTCTTGGAGGTTGTTCGGTTAGAGGGCCATGCTATGTTCCCTGAAGAAGCTGCTTTAGGAGGACGGGATATGTATTTATTGCAGCTCTGTAGTGGGGTTGATGAAAATACAGTTGGTGCCTGTGCTCAGCTTGTATTTGCACCTATAGATGAATCATTTGCCGATGATGCTCCCTTGCTGCCGTCTGGTTTTCGTGTCATACCATTGGAGTCCAAAACAGATGCGCCTGCAGCTACTCGAACTTTGGATTTGGCATCTACTCTAGAAGTCCGACCTGGAACTACCCGCCCAGGAGGTGAAACTGATGTTACAAACTACAACCTCAGGTCAGTCTTGACTATTGCATTCCAATTCACTTTCGAGAACCACATGCGGGATAGTGTGGCTGCTATGGCGAGACAATATGTGCGAACTGTTGTGGGATCAGTTCAAAGGGTTGCTATGGCTATCGCCCCCTCGCAGCTTGGCCCCCAAATCGGTCCAAAAAGCCTTCCTGGCTCCCCAGAGGCTCTCACATTAGCTCAGTGGATCGCACGAAGCTATAGGATCCACTCAGGGACAGAGCTCTTTCAAGTTGAATCCCTATCTGATGATGCTATCTTGAAGCAGCTTTGGCACCACTCAGATACAATCTTGTGCTGCTCTGTCAAAACTAATGCATCTCCTGTTTTCACATTTGCGAACCAAGCTGGACTTGACATGCTGGAAACTACCCTAGTCGCTCTTCAAGATATAACGCTTGACAAGATCCTCGATGATGCTGGCCGGAAGATACTGTGCTCCGAATTCTCCAAGATAATGCAACAGGGATTTGCATACCTTCCAGCAGGGATATGCGTCTCGAGTATGGGCAGGCTGGTGTCGTATGAACAGGCAATTGCATGGAAAGTTGTGAATGATGATGATGTCCATCACTGTCTGGCTTTCATGTTTGTTAACTGGTCCTTTATGTGA 2535 46.63 MALVVHRDSLNKQMDTSKYVRYTPEQVDALERVYAECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLTAMNKLLMEENDRLQTQVSRLVYENGYMRQQLHTASGTTTDNSCESVVMSGQQHQQQNPTKHTQKDANNPAGLLAIAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCNGVAARACGLVSLEPMKVAEILKDRLSWFRDCRCVDVLSAISTGNGGTIELLYMQTYAPTTLAAARDFWTLRYTTSLEDGSLVICERSLRSSTGGPSGPPPSSFVRAEMLPSGYLIRACEGGSLIHIVDHVDLDVWSVPEVLRPLYESTKILAQRMTVAALRYVRQIAQEASGEIQLGGGRQPAVLRTFSQRLCRGFNDAVNGFVDDGWSLMDSDGIEDVTVVINSSPNKFLCSQYNTSLYPTFGGVLCAKASMLLQNVPPALLVRFLREHRSEWADYGVDAYSAACLKASAYAVPCARSGGFPSGQVILPLAHTVENEEFLEVVRLEGHAMFPEEAALGGRDMYLLQLCSGVDENTVGACAQLVFAPIDESFADDAPLLPSGFRVIPLESKTDAPAATRTLDLASTLEVRPGTTRPGGETDVTNYNLRSVLTIAFQFTFENHMRDSVAAMARQYVRTVVGSVQRVAMAIAPSQLGPQIGPKSLPGSPEALTLAQWIARSYRIHSGTELFQVESLSDDAILKQLWHHSDTILCCSVKTNASPVFTFANQAGLDMLETTLVALQDITLDKILDDAGRKILCSEFSKIMQQGFAYLPAGICVSSMGRLVSYEQAIAWKVVNDDDVHHCLAFMFVNWSFM 844
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6868393 6875249 - CmPI595203_03g012270.1 Cmu03g1227 412013
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu03g1227 844 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 12 844 IPR044830 GO:0003700(InterPro)
Cmu03g1227 844 MobiDBLite consensus disorder prediction 126 156 - -
Cmu03g1227 844 Gene3D - 185 377 IPR023393 -
Cmu03g1227 844 Gene3D - 10 84 - -
Cmu03g1227 844 ProSiteProfiles 'Homeobox' domain profile. 13 77 IPR001356 GO:0003677(InterPro)
Cmu03g1227 844 Coils Coil 87 107 - -
Cmu03g1227 844 SMART START_1 165 374 IPR002913 GO:0008289(InterPro)
Cmu03g1227 844 Pfam START domain 166 373 IPR002913 GO:0008289(InterPro)
Cmu03g1227 844 Pfam MEKHLA domain 699 843 IPR013978 -
Cmu03g1227 844 SMART HOX_1 15 81 IPR001356 GO:0003677(InterPro)
Cmu03g1227 844 FunFam Homeobox-leucine zipper protein REVOLUTA 18 73 - -
Cmu03g1227 844 SUPERFAMILY Homeodomain-like 18 80 IPR009057 -
Cmu03g1227 844 Pfam Homeodomain 18 76 IPR001356 GO:0003677(InterPro)
Cmu03g1227 844 SUPERFAMILY Bet v1-like 413 598 - -
Cmu03g1227 844 ProSiteProfiles START domain profile. 156 383 IPR002913 GO:0008289(InterPro)
Cmu03g1227 844 CDD bZIP 70 109 - -
Cmu03g1227 844 SUPERFAMILY Bet v1-like 166 376 - -
Cmu03g1227 844 CDD homeodomain 18 78 IPR001356 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g2110 Cmu-Chr2:34730168 Cmu03g1227 Cmu-Chr3:6868393 0.00E+00 dispersed
Cmu03g1227 Cmu-Chr3:6868393 Cmu09g0010 Cmu-Chr9:394931 0.00E+00 dispersed
Cmu01g2457 Cmu-Chr1:36523388 Cmu03g1227 Cmu-Chr3:6868393 0.00E+00 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5897 PF01852 START 6.50E-50 CL0209 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu03g1227 K09338 - csv:101211318 1608.58